pycom16g26160

GDP-mannose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011307
Physical Location & Seq
Reverse (-)
28422591 .. 28425565
2975 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1509 bp
ATGGGCACAGCTCGTAATTTGATGGAGGAAGAGAGAAAGAGGGGGAGGGAAATTACTTGGGATGATAAGGAGGTCTGCGGGCACTACTTGGTTTGTTTTTGCCCGTTCGATCTCTTCGCCAATACTCGAAGCGATCTAGGACAGTGCCCTCAAATACATGACCCAAAGTTGAAAGAAAGTTTTGAGAAGTCACCACAGCATGATGCATATGTTCCCAAGTTTGAAGCCGAACTTGCTCAGTTTTGTGAGATGTTGGTTATGGATTTGGATAGAAGAGTAAGGCGTGAGCGAGAACGCCGTCATCAGGAGGTGGAACCTGCTCTACCACATCCACTGTCAAGTGAAAAGTCTGAACATTTGTTTGTTCTGGAGGAAAAGTTAAAGAAGTTGCTTGAACAAGTGGAGGTCCTTGGTGAATCCAGCAAGATGGATGAAACTGAAGTGTCCATGAGAAAGGCCCAGGGTGGTTCAAGTGACCCTACTCTCTTTGGTAATATCCAACCAAACTGGTATAGTGTCATACTCCAACAAATCTCAGTCTATGGTATAGCTGCTGGTTACTGCTTATCTGCCTCATTGCTTTCCATTATCAACAAATGGGCTGTCGTAAAATTTCCTTATCCTGGGGCACTAACTGCTTTACAGTATTTTACAAGTGCTATGGGGGTCCTTGTATGTGGCTGGCTTAAGTTGCTAGAACATGATTCGCTTGACCTTCTTACCATGTGGCGCTTCCTACCAGCAGCAATTATATTCTACCTCTCTCTCTTCACCAACAGTGAGCTCCTTCTTCATGCCAATGTCGACACTTTCATTGTCTTTCGTTCAGTTGTTCCAATCTTTGTTGCTATAGGAGAGACTCTCTTCTTGCACCAGCCATGGCTATCAATTAGGACATGGGCCTCACTTGCCACAATTTTTGGGGGAAGTGTGATTTATGTGCTTACAGATTACCAGTTCACAGTCACGGCTTATAGTTGGGCTCTAGCTTACTTGGTAAGCATGTCGATAGATTTTGTCTACATAAAGCATGTGGTAATGACCATCGGCTTAAATACATGGGGTCTTGTGCTCTATAACAATCTCGAGGCTCTTCTACTGTTTCCAATTGAACTACTAGTAATGGGAGAATTGAAGAAGATTAAGCATGAAATCACTGATGAATCAGATTGGTATTCTTTTAATGTGCTTTTGCCAGTGGGGTTATCTTGTTTATTTGGTTTATCTATCTCTTTCTTTGGATTTTCTTGCCGAAGGGCAATTTCTGCAACTGGATTTACTGTTCTTGGTATAGTGAACAAGCTATTGACTGTTGTGATTAATCTAATTATTTGGGACAAGCATTCAACCATTGTTGGTACAGTGGGGCTGTTAATATGTATGCTAGGCGGTGTTATGTATCAGCAATCTACAAGCAACAAGCCTAAGGTTGTGAATCAGGTAAAAGCACAAGAGATGGAGGAAGAACAACAAAAGTTAGTTGAGATGAACACCAGCTTAGAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0008150 GO:0015780 GO:0015931 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:1901264
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

503

Amino Acids

56.99

Weight (kDa)

5.55

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LUC7 PF03194 1 - 154 2.5e-40 LUC7 N_terminus
TPT PF03151 191 - 467 1.9e-15 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 325
AccI GTMKAC 2 cut(s) 804, 1020
AciI CCGC 2 cut(s) 78, 1389
AcsI RAATTY 1 cut(s) 611
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 1 cut(s) 1360
AfiI CCNNNNNNNGG 2 cut(s) 304, 623
AflII CTTAAG 1 cut(s) 686
AgsI TTSAA 7 cut(s) 172, 224, 395, 471, 1112, 1135, 1347
AhlI ACTAGT 1 cut(s) 1117
AjnI CCWGG 2 cut(s) 459, 622
AloI GAACNNNNNNTCC 2 cut(s) 1266, 1298
AluBI AGCT 6 cut(s) 11, 551, 784, 989, 1303, 1497
AluI AGCT 6 cut(s) 11, 551, 784, 989, 1303, 1497
Alw21I GWGCWC 2 cut(s) 786, 1074
Alw26I GTCTC 1 cut(s) 851
Ama87I CYCGRG 1 cut(s) 1085
AoxI GGCC 2 cut(s) 456, 900
ApeKI GCWGC 2 cut(s) 551, 743
ApoI RAATTY 1 cut(s) 611
ArsI GACNNNNNNTTYG 2 cut(s) 588, 620
AseI ATTAAT 1 cut(s) 1320
AspLEI GCGC 1 cut(s) 732
AspS9I GGNCC 4 cut(s) 406, 457, 667, 900
AsuHPI GGTGA 3 cut(s) 183, 425, 763
AvaI CYCGRG 1 cut(s) 1085
AvaII GGWCC 2 cut(s) 406, 667
AxyI CCTNAGG 1 cut(s) 1425
BaeGI GKGCMC 4 cut(s) 8, 84, 149, 631
BanII GRGCYC 2 cut(s) 786, 985
Bbv12I GWGCWC 2 cut(s) 786, 1074
BbvI GCAGC 2 cut(s) 538, 755
BccI CCATC 4 cut(s) 16, 421, 1052, 1450
BceAI ACGGC 2 cut(s) 282, 984
BciT130I CCWGG 2 cut(s) 461, 624
BcoDI GTCTC 1 cut(s) 851
BcuI ACTAGT 1 cut(s) 1117
BfaI CTAG 5 cut(s) 137, 695, 986, 1118, 1385
BfmI CTRYAG 1 cut(s) 849
BfoI RGCGCY 1 cut(s) 733
BfrI CTTAAG 1 cut(s) 686
BfuAI ACCTGC 1 cut(s) 325
BisI GCNGC 2 cut(s) 552, 744
BlsI GCNGC 2 cut(s) 553, 745
Bme1390I CCNGG 2 cut(s) 461, 624
Bme18I GGWCC 2 cut(s) 406, 667
BmeT110I CYCGRG 1 cut(s) 1085
BmgT120I GGNCC 4 cut(s) 406, 457, 667, 900
BmiI GGNNCC 2 cut(s) 315, 668
BmrFI CCNGG 2 cut(s) 461, 624
BmsI GCATC 1 cut(s) 193
BplI GAGNNNNNCTC 2 cut(s) 846, 878
BpmI CTGGAG 1 cut(s) 389
BsaJI CCNNGG 5 cut(s) 409, 459, 460, 623, 878
BsaXI ACNNNNNCTCC 2 cut(s) 362, 392
Bsc4I CCNNNNNNNGG 2 cut(s) 304, 623
Bse1I ACTGG 4 cut(s) 512, 955, 1196, 1276
Bse21I CCTNAGG 1 cut(s) 1425
Bse3DI GCAATG 1 cut(s) 575
BseBI CCWGG 2 cut(s) 461, 624
BseDI CCNNGG 5 cut(s) 409, 459, 460, 623, 878
BseGI GGATG 3 cut(s) 67, 328, 436
BseLI CCNNNNNNNGG 2 cut(s) 304, 623
BseMI GCAATG 1 cut(s) 575
BseMII CTCAG 2 cut(s) 251, 549
BseNI ACTGG 4 cut(s) 512, 955, 1196, 1276
BseSI GKGCMC 4 cut(s) 8, 84, 149, 631
BseXI GCAGC 2 cut(s) 538, 755
BshFI GGCC 2 cut(s) 458, 902
BsiHKAI GWGCWC 2 cut(s) 786, 1074
BsiHKCI CYCGRG 1 cut(s) 1085
BslFI GGGAC 1 cut(s) 1349
BslI CCNNNNNNNGG 2 cut(s) 304, 623
BsmAI GTCTC 1 cut(s) 851
BsmFI GGGAC 1 cut(s) 1349
BsmI GAATGC 1 cut(s) 1342
BsnI GGCC 2 cut(s) 458, 902
BsoBI CYCGRG 1 cut(s) 1085
Bsp1286I GDGCHC 7 cut(s) 8, 84, 149, 631, 786, 985, 1074
Bsp143I GATC 2 cut(s) 109, 133
Bsp19I CCATGG 1 cut(s) 878
BspACI CCGC 2 cut(s) 78, 1389
BspANI GGCC 2 cut(s) 458, 902
BspCNI CTCAG 2 cut(s) 250, 548
BspLI GGNNCC 2 cut(s) 315, 668
BspMI ACCTGC 1 cut(s) 325
BspQI GCTCTTC 1 cut(s) 1098
BspTI CTTAAG 1 cut(s) 686
BsrDI GCAATG 1 cut(s) 575
BsrI ACTGG 4 cut(s) 512, 955, 1196, 1276
BssECI CCNNGG 5 cut(s) 409, 459, 460, 623, 878
BssMI GATC 2 cut(s) 109, 133
BssT1I CCWWGG 2 cut(s) 409, 878
Bst2UI CCWGG 2 cut(s) 461, 624
Bst4CI ACNGT 9 cut(s) 144, 336, 645, 779, 964, 1101, 1282, 1312, 1363
Bst6I CTCTTC 6 cut(s) 24, 119, 268, 773, 869, 1098
BstAFI CTTAAG 1 cut(s) 686
BstAPI GCANNNNNTGC 2 cut(s) 635, 1265
BstC8I GCNNGC 2 cut(s) 80, 683
BstDEI CTNAG 4 cut(s) 237, 535, 1425, 1498
BstDSI CCRYGG 1 cut(s) 878
BstF5I GGATG 3 cut(s) 67, 328, 436
BstH2I RGCGCY 1 cut(s) 733
BstHHI GCGC 1 cut(s) 732
BstKTI GATC 2 cut(s) 112, 136
BstMAI GTCTC 1 cut(s) 851
BstMBI GATC 2 cut(s) 109, 133
BstMWI GCNNNNNNNGC 5 cut(s) 233, 635, 691, 908, 1265
BstNI CCWGG 2 cut(s) 461, 624
BstNSI RCATGY 2 cut(s) 1006, 1034
BstSCI CCNGG 2 cut(s) 459, 622
BstSFI CTRYAG 1 cut(s) 849
BstSLI GKGCMC 4 cut(s) 8, 84, 149, 631
BstV1I GCAGC 2 cut(s) 538, 755
BstXI CCANNNNNNTGG 1 cut(s) 427
Bsu36I CCTNAGG 1 cut(s) 1425
BsuRI GGCC 2 cut(s) 458, 902
BtgI CCRYGG 1 cut(s) 878
BtsCI GGATG 3 cut(s) 67, 328, 436
BtsIMutI CAGTG 6 cut(s) 149, 332, 784, 1155, 1203, 1368
BveI ACCTGC 1 cut(s) 325
Cac8I GCNNGC 2 cut(s) 80, 683
CfoI GCGC 1 cut(s) 732
Cfr13I GGNCC 4 cut(s) 406, 457, 667, 900
Csp6I GTAC 1 cut(s) 1359
CspCI CAANNNNNGTGG 2 cut(s) 901, 936
CviQI GTAC 1 cut(s) 1359
DdeI CTNAG 4 cut(s) 237, 535, 1425, 1498
DpnI GATC 2 cut(s) 111, 135
DpnII GATC 2 cut(s) 109, 133
Eam1104I CTCTTC 6 cut(s) 24, 119, 268, 773, 869, 1098
EarI CTCTTC 6 cut(s) 24, 119, 268, 773, 869, 1098
Ecl136II GAGCTC 1 cut(s) 784
Eco130I CCWWGG 2 cut(s) 409, 878
Eco24I GRGCYC 2 cut(s) 786, 985
Eco47I GGWCC 2 cut(s) 406, 667
Eco53kI GAGCTC 1 cut(s) 784
Eco57I CTGAAG 1 cut(s) 459
Eco81I CCTNAGG 1 cut(s) 1425
Eco88I CYCGRG 1 cut(s) 1085
EcoICRI GAGCTC 1 cut(s) 784
EcoO109I RGGNCCY 2 cut(s) 406, 667
EcoRII CCWGG 2 cut(s) 459, 622
EcoT14I CCWWGG 2 cut(s) 409, 878
EcoT22I ATGCAT 1 cut(s) 208
EcoT38I GRGCYC 2 cut(s) 786, 985
ErhI CCWWGG 2 cut(s) 409, 878
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 1 cut(s) 1349
FauI CCCGC 1 cut(s) 71
FauNDI CATATG 1 cut(s) 208
FblI GTMKAC 2 cut(s) 804, 1020
Fnu4HI GCNGC 2 cut(s) 552, 744
FokI GGATG 3 cut(s) 74, 315, 443
FriOI GRGCYC 2 cut(s) 786, 985
Fsp4HI GCNGC 2 cut(s) 552, 744
FspBI CTAG 5 cut(s) 137, 695, 986, 1118, 1385
GlaI GCGC 1 cut(s) 731
GluI GCNGC 2 cut(s) 552, 744
GsuI CTGGAG 1 cut(s) 389
HaeII RGCGCY 1 cut(s) 733
HaeIII GGCC 2 cut(s) 458, 902
HhaI GCGC 1 cut(s) 732
Hin6I GCGC 1 cut(s) 730
HinP1I GCGC 1 cut(s) 730
HincII GTYRAC 1 cut(s) 805
HindII GTYRAC 1 cut(s) 805
HinfI GANTC 5 cut(s) 416, 704, 859, 1163, 1435
HphI GGTGA 3 cut(s) 183, 425, 763
Hpy166II GTNNAC 4 cut(s) 805, 960, 1021, 1297
Hpy188I TCNGA 2 cut(s) 352, 1168
Hpy188III TCNNGA 3 cut(s) 305, 368, 1085
Hpy8I GTNNAC 4 cut(s) 805, 960, 1021, 1297
HpyAV CCTTC 3 cut(s) 725, 797, 1248
HpyCH4III ACNGT 9 cut(s) 144, 336, 645, 779, 964, 1101, 1282, 1312, 1363
HpyCH4V TGCA 3 cut(s) 206, 871, 1268
HpyF10VI GCNNNNNNNGC 5 cut(s) 233, 635, 691, 908, 1265
HpyF3I CTNAG 4 cut(s) 237, 535, 1425, 1498
HspAI GCGC 1 cut(s) 730
Kzo9I GATC 2 cut(s) 109, 133
LguI GCTCTTC 1 cut(s) 1098
LmnI GCTCC 1 cut(s) 789
Lsp1109I GCAGC 2 cut(s) 538, 755
LweI GCATC 1 cut(s) 193
MaeI CTAG 5 cut(s) 137, 695, 986, 1118, 1385
MaeIII GTNAC 4 cut(s) 189, 473, 557, 964
MalI GATC 2 cut(s) 111, 135
MboI GATC 2 cut(s) 109, 133
MfeI CAATTG 1 cut(s) 1107
MhlI GDGCHC 7 cut(s) 8, 84, 149, 631, 786, 985, 1074
MlyI GAGTC 1 cut(s) 853
MmeI TCCRAC 2 cut(s) 523, 550
Mph1103I ATGCAT 1 cut(s) 208
MseI TTAA 7 cut(s) 380, 687, 1052, 1143, 1182, 1320, 1373
MslI CAYNNNNRTG 1 cut(s) 798
MspCI CTTAAG 1 cut(s) 686
MspR9I CCNGG 2 cut(s) 461, 624
MunI CAATTG 1 cut(s) 1107
Mva1269I GAATGC 1 cut(s) 1342
MvaI CCWGG 2 cut(s) 461, 624
MwoI GCNNNNNNNGC 5 cut(s) 233, 635, 691, 908, 1265
NcoI CCATGG 1 cut(s) 878
NdeI CATATG 1 cut(s) 208
NdeII GATC 2 cut(s) 109, 133
NlaIV GGNNCC 2 cut(s) 315, 668
NmuCI GTSAC 3 cut(s) 189, 473, 964
NsiI ATGCAT 1 cut(s) 208
NspI RCATGY 2 cut(s) 1006, 1034
PaeR7I CTCGAG 1 cut(s) 1085
PasI CCCWGGG 1 cut(s) 460
PciSI GCTCTTC 1 cut(s) 1098
PctI GAATGC 1 cut(s) 1342
PfeI GAWTC 4 cut(s) 416, 704, 1163, 1435
PkrI GCNGC 2 cut(s) 553, 745
PleI GAGTC 1 cut(s) 853
PpsI GAGTC 1 cut(s) 853
PpuMI RGGWCCY 2 cut(s) 406, 667
PshBI ATTAAT 1 cut(s) 1320
Psp124BI GAGCTC 1 cut(s) 786
Psp5II RGGWCCY 2 cut(s) 406, 667
Psp6I CCWGG 2 cut(s) 459, 622
PspGI CCWGG 2 cut(s) 459, 622
PspN4I GGNNCC 2 cut(s) 315, 668
PspPI GGNCC 4 cut(s) 406, 457, 667, 900
PspPPI RGGWCCY 2 cut(s) 406, 667
PsrI GAACNNNNNNTAC 2 cut(s) 306, 338
RsaI GTAC 1 cut(s) 1360
RsaNI GTAC 1 cut(s) 1359
RseI CAYNNNNRTG 1 cut(s) 798
SacI GAGCTC 1 cut(s) 786
SalI GTCGAC 1 cut(s) 803
SapI GCTCTTC 1 cut(s) 1098
SaqAI TTAA 7 cut(s) 380, 687, 1052, 1143, 1182, 1320, 1373
SatI GCNGC 2 cut(s) 552, 744
Sau3AI GATC 2 cut(s) 109, 133
Sau96I GGNCC 4 cut(s) 406, 457, 667, 900
SchI GAGTC 1 cut(s) 853
ScrFI CCNGG 2 cut(s) 461, 624
SduI GDGCHC 7 cut(s) 8, 84, 149, 631, 786, 985, 1074
SfaNI GCATC 1 cut(s) 193
SfcI CTRYAG 1 cut(s) 849
Sfr274I CTCGAG 1 cut(s) 1085
SinI GGWCC 2 cut(s) 406, 667
SlaI CTCGAG 1 cut(s) 1085
SmiMI CAYNNNNRTG 1 cut(s) 798
SmlI CTYRAG 2 cut(s) 686, 1085
SmoI CTYRAG 2 cut(s) 686, 1085
SpeI ACTAGT 1 cut(s) 1117
SsiI CCGC 2 cut(s) 78, 1389
SspMI CTAG 5 cut(s) 137, 695, 986, 1118, 1385
SstI GAGCTC 1 cut(s) 786
StyD4I CCNGG 2 cut(s) 459, 622
StyI CCWWGG 2 cut(s) 409, 878
TaaI ACNGT 9 cut(s) 144, 336, 645, 779, 964, 1101, 1282, 1312, 1363
TaqI TCGA 5 cut(s) 108, 127, 804, 1007, 1086
TfiI GAWTC 4 cut(s) 416, 704, 1163, 1435
Tru1I TTAA 7 cut(s) 380, 687, 1052, 1143, 1182, 1320, 1373
Tru9I TTAA 7 cut(s) 380, 687, 1052, 1143, 1182, 1320, 1373
TscAI CASTG 6 cut(s) 149, 339, 784, 1162, 1203, 1368
TseFI GTSAC 3 cut(s) 189, 473, 964
TseI GCWGC 2 cut(s) 551, 743
Tsp45I GTSAC 3 cut(s) 189, 473, 964
TspDTI ATGAA 6 cut(s) 447, 782, 802, 1164, 1176, 1502
TspRI CASTG 6 cut(s) 149, 339, 784, 1162, 1203, 1368
Vha464I CTTAAG 1 cut(s) 686
VpaK11BI GGWCC 2 cut(s) 406, 667
VspI ATTAAT 1 cut(s) 1320
XapI RAATTY 1 cut(s) 611
XceI RCATGY 2 cut(s) 1006, 1034
XhoI CTCGAG 1 cut(s) 1085
XmiI GTMKAC 2 cut(s) 804, 1020
XspI CTAG 5 cut(s) 137, 695, 986, 1118, 1385
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.