Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007513

Physical Location & Seq

Genomic Coordinates Reverse (-)

28815386 .. 28821739

Gene Structure 6354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGTCGAACGCAGTGGCGAATGGTCTGGCAGGAGCCGGAGGTGGTATCATTGCCCAGATTATCACTTATCCCCTCCAAACAGTCAATACGCGCCAACAAACGGAGAGAGTATCCAAACAATCATTTGCTAATTCCAAACGGCTTGGCACGCTTGTCCAAATACTCCAGGTCATAAGAAGCGACGGTTGGGGAGGACTATACAGCGGCCTTAAGCCTTCTCTGCTCGGGACTGCCGCTTCACAGGGAATTTATTACTATTTTTACCAGGTTTTCAAAAACAAGGCCGAGGCCATTGCAATTGCCCGTAGAGCAAAAGGACGCGGGGATGGTACTATTGGGATGTTTTCTTGGCTTCTTGTGGCGGCTTTTGCCGGTTCCTTGAACGTGTTGCTGACAAATCCTATATGGGTTCTCGTCACTCGTATGCAGACACATACTCAAGCAGAGAGAAAAATTATGGAGGAAAGAAAGGAAGCTCTCTTAAAGGAAGCTTCTAAAAACTGTTTGACAGGTTCAGCATTGCAAGATAAATTGGCTGAACTTGATTCAATAAAACCTCGTCCGTATGGAACTTTGCAAGCGGTGCACGAGGTTCATACTGAATCTGGAATTGCCGGATTTTGGAAAGGCATTATCCCAACACTTATTATGGTTTGCAACCCATCAATACAGTTCATGATTTATGAAAGCTCTTTAAAGCATATGAAGATGAAACGTGCTGCCAGGAAGCAGGGATCAAAAAATATAACTGCTTTGGAGGTTTTTTTGTTAGGGGCGATTGCAAAACTAGGAGCAACCATCTCAACATACCCATTGTTAGTTGTCAAGTCAAGACTGCAAGCAAAGCAGGAGATCGGCGGGAATATTTCACTAAGATACTCAGGTACTTTCGATGCTATAACGAAGATGATCAAGTATGAAGGATTGCCTGGATTTTACAAAGGGATGAGCACAAAGATAGTACAAAGTGTTTTTGCAGCCTCTGTACTTTTTATGGTTAAGGAGGAATTCGTTAAGATTTACATGTTGCTGGCCGATAAGTGCAGTAGAGTGCTGCTTAGTTCAGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

358

Amino Acids

39.1

Weight (kDa)

9.92

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	3 - 93	3.6e-17	Mitochondrial carrier protein
Mito_carr	PF00153	115 - 236	3.2e-12	Mitochondrial carrier protein
Mito_carr	PF00153	249 - 341	2.8e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007513)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26920 FvH4_5g26920 FvH4_5g26920 FvH4_5g26920 FvH4_5g26920 FvH4_5g26920
malus_domestica	MD00G1181800.v1.1
prunus_persica	Prupe.5G000200_v2.0.a1 Prupe.5G000200_v2.0.a1 Prupe.5G000200_v2.0.a1 Prupe.5G000200_v2.0.a1 Prupe.5G000200_v2.0.a1
pyrus_communis	pycom16g26390
rosa_chinensis	RchiOBHm_Chr7g0217961
rosa_laevigata	RLG00000002429
rosa_multiflora	Rmu_sc0012998.1_g000003 Rmu_sc0014729.1_g000002
rosa_roxburghii	Rroxscaffold_3G00241600
rosa_rugosa	Rorug07G0172400
rosa_samantha	Rh7AG314600 Rh7BG304900 Rh7CG332100 Rh7DG312800
rosa_wichuraiana	Rw0G017300 Rw7G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	91, 321
AciI	CCGC	6 cut(s)	204, 234, 321, 362, 581, 858
AclWI	GGATC	1 cut(s)	742
AcoI	YGGCCR	1 cut(s)	1032
AcsI	RAATTY	2 cut(s)	246, 1007
AfaI	GTAC	4 cut(s)	331, 886, 963, 987
AfiI	CCNNNNNNNGG	2 cut(s)	100, 621
AflII	CTTAAG	1 cut(s)	209
AflIII	ACRYGT	2 cut(s)	384, 1023
AgsI	TTSAA	3 cut(s)	274, 382, 549
AjnI	CCWGG	4 cut(s)	165, 264, 722, 928
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AluBI	AGCT	3 cut(s)	476, 491, 690
AluI	AGCT	3 cut(s)	476, 491, 690
Alw21I	GWGCWC	2 cut(s)	588, 953
Alw44I	GTGCAC	1 cut(s)	584
AlwI	GGATC	1 cut(s)	742
AlwNI	CAGNNNCTG	1 cut(s)	983
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	4 cut(s)	205, 282, 288, 1032
ApaLI	GTGCAC	1 cut(s)	584
ApeKI	GCWGC	3 cut(s)	719, 977, 1054
ApoI	RAATTY	2 cut(s)	246, 1007
AspLEI	GCGC	1 cut(s)	93
AvaI	CYCGRG	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	588
BaeI	ACNNNNGTAYC	2 cut(s)	868, 901
BauI	CACGAG	1 cut(s)	587
Bbv12I	GWGCWC	2 cut(s)	588, 953
BbvI	GCAGC	3 cut(s)	706, 989, 1041
BccI	CCATC	3 cut(s)	320, 670, 806
BceAI	ACGGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciT130I	CCWGG	4 cut(s)	167, 266, 724, 930
BciVI	GTATCC	1 cut(s)	121
BclI	TGATCA	1 cut(s)	909
BfaI	CTAG	1 cut(s)	788
BfrI	CTTAAG	1 cut(s)	209
BfuI	GTATCC	1 cut(s)	121
BisI	GCNGC	6 cut(s)	205, 234, 363, 720, 978, 1055
BlsI	GCNGC	6 cut(s)	206, 235, 364, 721, 979, 1056
Bme1390I	CCNGG	4 cut(s)	167, 266, 724, 930
BmeT110I	CYCGRG	1 cut(s)	224
BmiI	GGNNCC	2 cut(s)	34, 376
BmrFI	CCNGG	4 cut(s)	167, 266, 724, 930
BmsI	GCATC	1 cut(s)	883
BpmI	CTGGAG	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	423
BsaJI	CCNNGG	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 621
Bse118I	RCCGGY	1 cut(s)	371
Bse3DI	GCAATG	3 cut(s)	48, 291, 518
BseBI	CCWGG	4 cut(s)	167, 266, 724, 930
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	3 cut(s)	331, 345, 951
BseLI	CCNNNNNNNGG	2 cut(s)	100, 621
BseMI	GCAATG	3 cut(s)	48, 291, 518
BseMII	CTCAG	1 cut(s)	894
BseSI	GKGCMC	1 cut(s)	588
BseXI	GCAGC	3 cut(s)	706, 989, 1041
BsgI	GTGCAG	1 cut(s)	1063
Bsh1236I	CGCG	2 cut(s)	91, 321
BshFI	GGCC	4 cut(s)	207, 284, 290, 1034
BsiHKAI	GWGCWC	2 cut(s)	588, 953
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	3 cut(s)	36, 372, 615
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	2 cut(s)	100, 621
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	4 cut(s)	207, 284, 290, 1034
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	2 cut(s)	588, 953
Bsp143I	GATC	3 cut(s)	734, 852, 909
BspACI	CCGC	6 cut(s)	204, 234, 321, 362, 581, 858
BspANI	GGCC	4 cut(s)	207, 284, 290, 1034
BspCNI	CTCAG	1 cut(s)	893
BspFNI	CGCG	2 cut(s)	91, 321
BspHI	TCATGA	1 cut(s)	675
BspLI	GGNNCC	2 cut(s)	34, 376
BspPI	GGATC	1 cut(s)	742
BspTI	CTTAAG	1 cut(s)	209
BsrDI	GCAATG	3 cut(s)	48, 291, 518
BsrFI	RCCGGY	1 cut(s)	371
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	3 cut(s)	734, 852, 909
BssSI	CACGAG	1 cut(s)	587
Bst2BI	CACGAG	1 cut(s)	587
Bst2UI	CCWGG	4 cut(s)	167, 266, 724, 930
Bst4CI	ACNGT	4 cut(s)	82, 185, 503, 672
BstAFI	CTTAAG	1 cut(s)	209
BstAPI	GCANNNNNTGC	1 cut(s)	583
BstC8I	GCNNGC	4 cut(s)	149, 579, 840, 1032
BstDEI	CTNAG	3 cut(s)	872, 880, 1058
BstF5I	GGATG	3 cut(s)	331, 345, 951
BstFNI	CGCG	2 cut(s)	91, 321
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	3 cut(s)	737, 855, 912
BstMBI	GATC	3 cut(s)	734, 852, 909
BstMWI	GCNNNNNNNGC	6 cut(s)	148, 220, 308, 368, 583, 844
BstNI	CCWGG	4 cut(s)	167, 266, 724, 930
BstNSI	RCATGY	1 cut(s)	1027
BstSCI	CCNGG	4 cut(s)	165, 264, 722, 928
BstSLI	GKGCMC	1 cut(s)	588
BstUI	CGCG	2 cut(s)	91, 321
BstV1I	GCAGC	3 cut(s)	706, 989, 1041
BsuI	GTATCC	1 cut(s)	121
BsuRI	GGCC	4 cut(s)	207, 284, 290, 1034
BtsCI	GGATG	3 cut(s)	331, 345, 951
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	4 cut(s)	149, 579, 840, 1032
CaiI	CAGNNNCTG	1 cut(s)	983
CciI	TCATGA	1 cut(s)	675
CfoI	GCGC	1 cut(s)	93
Cfr10I	RCCGGY	1 cut(s)	371
CseI	GACGC	1 cut(s)	327
CsiI	ACCWGGT	1 cut(s)	264
Csp6I	GTAC	4 cut(s)	330, 885, 962, 986
CviAII	CATG	2 cut(s)	676, 1024
CviQI	GTAC	4 cut(s)	330, 885, 962, 986
DdeI	CTNAG	3 cut(s)	872, 880, 1058
DpnI	GATC	3 cut(s)	736, 854, 911
DpnII	GATC	3 cut(s)	734, 852, 909
DraI	TTTAAA	1 cut(s)	696
EaeI	YGGCCR	1 cut(s)	1032
Eco88I	CYCGRG	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	1007
EcoRII	CCWGG	4 cut(s)	165, 264, 722, 928
FaeI	CATG	2 cut(s)	679, 1027
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	2 cut(s)	675, 1023
FauI	CCCGC	2 cut(s)	314, 851
FauNDI	CATATG	1 cut(s)	702
FbaI	TGATCA	1 cut(s)	909
Fnu4HI	GCNGC	6 cut(s)	205, 234, 363, 720, 978, 1055
FokI	GGATG	3 cut(s)	338, 352, 958
Fsp4HI	GCNGC	6 cut(s)	205, 234, 363, 720, 978, 1055
FspBI	CTAG	1 cut(s)	788
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	6 cut(s)	205, 234, 363, 720, 978, 1055
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	4 cut(s)	207, 284, 290, 1034
HapII	CCGG	3 cut(s)	36, 372, 615
HgaI	GACGC	1 cut(s)	327
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	679, 1027
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	2 cut(s)	545, 602
HpaII	CCGG	3 cut(s)	36, 372, 615
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188III	TCNNGA	4 cut(s)	226, 606, 676, 831
Hpy8I	GTNNAC	1 cut(s)	586
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	225, 914
HpyCH4III	ACNGT	4 cut(s)	82, 185, 503, 672
HpyCH4IV	ACGT	2 cut(s)	384, 715
HpyF10VI	GCNNNNNNNGC	6 cut(s)	148, 220, 308, 368, 583, 844
HpyF3I	CTNAG	3 cut(s)	872, 880, 1058
HpySE526I	ACGT	2 cut(s)	384, 715
Hsp92II	CATG	2 cut(s)	679, 1027
HspAI	GCGC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	909
Kzo9I	GATC	3 cut(s)	734, 852, 909
LmnI	GCTCC	2 cut(s)	32, 791
Lsp1109I	GCAGC	3 cut(s)	706, 989, 1041
LweI	GCATC	1 cut(s)	883
MabI	ACCWGGT	1 cut(s)	264
MaeI	CTAG	1 cut(s)	788
MaeII	ACGT	2 cut(s)	384, 715
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	3 cut(s)	736, 854, 911
MboI	GATC	3 cut(s)	734, 852, 909
MboII	GAAGA	2 cut(s)	718, 916
MfeI	CAATTG	1 cut(s)	297
MhlI	GDGCHC	2 cut(s)	588, 953
MluCI	AATT	7 cut(s)	130, 246, 297, 453, 530, 609, 1007
MseI	TTAA	5 cut(s)	210, 482, 695, 999, 1014
MslI	CAYNNNNRTG	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	204
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	3 cut(s)	36, 372, 615
MspR9I	CCNGG	4 cut(s)	167, 266, 724, 930
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	4 cut(s)	167, 266, 724, 930
MvnI	CGCG	2 cut(s)	91, 321
MwoI	GCNNNNNNNGC	6 cut(s)	148, 220, 308, 368, 583, 844
NdeI	CATATG	1 cut(s)	702
NdeII	GATC	3 cut(s)	734, 852, 909
NlaIII	CATG	2 cut(s)	679, 1027
NlaIV	GGNNCC	2 cut(s)	34, 376
NmeAIII	GCCGAG	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	1 cut(s)	1027
PagI	TCATGA	1 cut(s)	675
PciI	ACATGT	1 cut(s)	1023
PfeI	GAWTC	2 cut(s)	545, 602
PkrI	GCNGC	6 cut(s)	206, 235, 364, 721, 979, 1056
PscI	ACATGT	1 cut(s)	1023
Psp6I	CCWGG	4 cut(s)	165, 264, 722, 928
PspGI	CCWGG	4 cut(s)	165, 264, 722, 928
PspN4I	GGNNCC	2 cut(s)	34, 376
PstNI	CAGNNNCTG	1 cut(s)	983
RsaI	GTAC	4 cut(s)	331, 886, 963, 987
RsaNI	GTAC	4 cut(s)	330, 885, 962, 986
RseI	CAYNNNNRTG	1 cut(s)	422
SaqAI	TTAA	5 cut(s)	210, 482, 695, 999, 1014
SatI	GCNGC	6 cut(s)	205, 234, 363, 720, 978, 1055
Sau3AI	GATC	3 cut(s)	734, 852, 909
ScrFI	CCNGG	4 cut(s)	167, 266, 724, 930
SduI	GDGCHC	2 cut(s)	588, 953
SexAI	ACCWGGT	1 cut(s)	264
SfaNI	GCATC	1 cut(s)	883
SmiMI	CAYNNNNRTG	1 cut(s)	422
SmlI	CTYRAG	2 cut(s)	209, 438
SmoI	CTYRAG	2 cut(s)	209, 438
Sse9I	AATT	7 cut(s)	130, 246, 297, 453, 530, 609, 1007
SsiI	CCGC	6 cut(s)	204, 234, 321, 362, 581, 858
SspI	AATATT	1 cut(s)	865
SspMI	CTAG	1 cut(s)	788
StyD4I	CCNGG	4 cut(s)	165, 264, 722, 928
TaaI	ACNGT	4 cut(s)	82, 185, 503, 672
TaiI	ACGT	2 cut(s)	387, 718
TaqI	TCGA	2 cut(s)	5, 891
TasI	AATT	7 cut(s)	130, 246, 297, 453, 530, 609, 1007
TatI	WGTACW	2 cut(s)	961, 985
TauI	GCSGC	3 cut(s)	207, 236, 365
TfiI	GAWTC	2 cut(s)	545, 602
Tru1I	TTAA	5 cut(s)	210, 482, 695, 999, 1014
Tru9I	TTAA	5 cut(s)	210, 482, 695, 999, 1014
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	3 cut(s)	719, 977, 1054
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	6 cut(s)	584, 664, 699, 719, 725, 933
TspGWI	ACGGA	2 cut(s)	116, 552
TspRI	CASTG	1 cut(s)	18
Vha464I	CTTAAG	1 cut(s)	209
VneI	GTGCAC	1 cut(s)	584
XapI	RAATTY	2 cut(s)	246, 1007
XceI	RCATGY	1 cut(s)	1027
XspI	CTAG	1 cut(s)	788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.