Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0013476

Physical Location & Seq

Genomic Coordinates Reverse (-)

43155 .. 44721

Gene Structure 1567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGAACACAGAAAGAATGATGACCGATGCAGCAATACTTCAGTCGTTGGCATTCAAGTGGTCGTCCCCCATTTGCCACTCAACCTCCCACCTCCCAAAACATTACCCGCTACTGATGAGTGCTTTTATGTTAGAGATTCTGGTGCTCAATCCCGATCTCAATTCTTATCCGCCGACCACACTGATTTGCTTAGAACAAGACTTGGAATTCATGTGACGGGAGACTTAGTTCCAACACCAATCTTGTCATTCTCTTCGTGTAATTGTCCTCAAAAGCTCCTCCAAAATATAGAGGCTGCAGGCTTTGAACTGCCCACACCAGTCCAGATGCAAGCAATCCCAGCTGCTTTGAGTGGCAAAAGTTTGCTTGTTTCTGCTGAGACGGGCTCTGGTAAAACTGCTTCCTTTTTGGTTCCAATTGTTTCTCTTTGTGCAAACTTTCGCTTTCAGCAGTCCGCAGACCAAAAGAGGCCATTAGCAATGGTTCTAACACCAACCAGAGAGCTCTGCATACAAGTTGAGGAGCAGGCTAAGTTGCTCGGAAAGGGTTTGCCTTTTAAAACAGCACTCGTAGTTGGTGGTGATGCAATGGCTAGACAACTTCACCGCCTTCAGCAAGGAGTGGAGCTCATTGTGGGAACTCCGGGCAGGCTGATAGATCTTTTAACGAAGAATGATATAGAACTGGATGATGTAAGGATTTTCGCACTTGATGAAGTGGACTGCATGCTTCAAAGGGGCTTCCGGGATCAGGTAATGCAGATATTTAGGGCTTTATCGCAACCCCAGGTTTTACTGTATTCTGCAACAGTCTCCCCAGATATAGAGAAGATGGCAAGCTGTATGGCAAAAGATGTTGCCGTAGTCTTTGTTGGCAATCCCAACAGGCCAAATAAGGCTGTGAAGCAACTACCCATCTGGGTTGAGTCAAAGCAAAAAAAGCAAAAGCTTTTCGACATATTGATGAGCAAGCAGCATTTTATGCCGCCTGTGGTGGTTTATGTGGGATCAAGACTTGGGGCAGATCTCCTATCTAGTGCAATTACAGTCACCACTGGGGTGAAAGCTTTGTCGATCCATGGGGAGAAATCCATGAAAGAGAGGAGAGATATCATGAGCTCTTTCTTAATGGGTGAGGTTCCTGTTATTGTAGCCACTGGGATTTTAGGCCGTGGGGTTGATCGATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C zf-HIT

Protein Analysis

397

Amino Acids

43.28

Weight (kDa)

8.85

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	106 - 277	8.7e-43	DEAD/DEAH box helicase
Helicase_C	PF00271	313 - 394	1.6e-08	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02065 AT3G02065 AT3G02065
fragaria_vesca	FvH4_6g35850 FvH4_6g35850
malus_domestica	MD17G1003800.v1.1
pyrus_communis	pycom17g00050
rosa_chinensis	RchiOBHm_Chr2g0147891
rosa_laevigata	RLG00000020290
rosa_multiflora	Rmu_sc0000308.1_g000058
rosa_roxburghii	Rroxscaffold_2G00099220
rosa_rugosa	Rorug02G0402700 Rorug02G0402800
rosa_samantha	Rh2AG459700 Rh2BG473000 Rh2CG447000 Rh2DG481900
rosa_wichuraiana	Rw2G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	108, 171, 456, 607, 986
AclWI	GGATC	4 cut(s)	756, 1015, 1069, 1179
AcsI	RAATTY	1 cut(s)	207
AcuI	CTGAAG	2 cut(s)	24, 596
AfiI	CCNNNNNNNGG	1 cut(s)	751
AgsI	TTSAA	3 cut(s)	56, 308, 734
AjnI	CCWGG	1 cut(s)	786
AleI	CACNNNNGTG	1 cut(s)	1058
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
AluBI	AGCT	8 cut(s)	277, 344, 505, 628, 840, 949, 1067, 1119
AluI	AGCT	8 cut(s)	277, 344, 505, 628, 840, 949, 1067, 1119
Alw21I	GWGCWC	4 cut(s)	148, 507, 630, 1121
Alw26I	GTCTC	3 cut(s)	216, 374, 817
AlwI	GGATC	4 cut(s)	756, 1015, 1069, 1179
AoxI	GGCC	3 cut(s)	470, 887, 1168
ApeKI	GCWGC	4 cut(s)	30, 296, 344, 973
ApoI	RAATTY	1 cut(s)	207
AsuC2I	CCSGG	2 cut(s)	645, 746
AsuHPI	GGTGA	5 cut(s)	593, 596, 1042, 1072, 1145
BanII	GRGCYC	4 cut(s)	389, 507, 630, 1121
BarI	GAAGNNNNNNTAC	2 cut(s)	385, 417
Bbv12I	GWGCWC	4 cut(s)	148, 507, 630, 1121
BbvI	GCAGC	4 cut(s)	42, 283, 331, 985
BccI	CCATC	2 cut(s)	826, 923
BceAI	ACGGC	2 cut(s)	845, 1155
BciT130I	CCWGG	1 cut(s)	788
BcnI	CCSGG	2 cut(s)	645, 746
BcoDI	GTCTC	3 cut(s)	216, 374, 817
BfaI	CTAG	2 cut(s)	594, 1035
BfmI	CTRYAG	1 cut(s)	297
BglII	AGATCT	2 cut(s)	658, 1024
BisI	GCNGC	5 cut(s)	31, 297, 345, 974, 986
BlsI	GCNGC	5 cut(s)	32, 298, 346, 975, 987
Bme1390I	CCNGG	3 cut(s)	645, 746, 788
BmiI	GGNNCC	2 cut(s)	414, 1140
BmrFI	CCNGG	3 cut(s)	645, 746, 788
BmrI	ACTGGG	2 cut(s)	1065, 1167
BmsI	GCATC	3 cut(s)	17, 318, 574
BmuI	ACTGGG	2 cut(s)	1065, 1167
BplI	GAGNNNNNCTC	4 cut(s)	371, 403, 612, 644
BpuMI	CCSGG	2 cut(s)	645, 746
Bsa29I	ATCGAT	1 cut(s)	1183
BsaJI	CCNNGG	3 cut(s)	786, 1078, 1171
BsaXI	ACNNNNNCTCC	4 cut(s)	69, 99, 213, 243
Bsc4I	CCNNNNNNNGG	1 cut(s)	751
Bse1I	ACTGG	4 cut(s)	320, 690, 1060, 1162
Bse3DI	GCAATG	2 cut(s)	486, 594
BseBI	CCWGG	1 cut(s)	788
BseCI	ATCGAT	1 cut(s)	1183
BseDI	CCNNGG	3 cut(s)	786, 1078, 1171
BseGI	GGATG	1 cut(s)	694
BseLI	CCNNNNNNNGG	1 cut(s)	751
BseMI	GCAATG	2 cut(s)	486, 594
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	4 cut(s)	320, 690, 1060, 1162
BseRI	GAGGAG	3 cut(s)	269, 536, 1117
BseXI	GCAGC	4 cut(s)	42, 283, 331, 985
BseYI	CCCAGC	1 cut(s)	340
BshFI	GGCC	3 cut(s)	472, 889, 1170
BshVI	ATCGAT	1 cut(s)	1183
BsiHKAI	GWGCWC	4 cut(s)	148, 507, 630, 1121
BsiSI	CCGG	2 cut(s)	644, 745
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	751
BsmAI	GTCTC	3 cut(s)	216, 374, 817
BsmBI	CGTCTC	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	51
BsnI	GGCC	3 cut(s)	472, 889, 1170
Bsp1286I	GDGCHC	5 cut(s)	148, 389, 507, 630, 1121
Bsp143I	GATC	8 cut(s)	155, 658, 748, 1007, 1024, 1074, 1180, 1184
Bsp19I	CCATGG	1 cut(s)	1078
BspACI	CCGC	5 cut(s)	108, 171, 456, 607, 986
BspANI	GGCC	3 cut(s)	472, 889, 1170
BspCNI	CTCAG	1 cut(s)	370
BspDI	ATCGAT	1 cut(s)	1183
BspHI	TCATGA	1 cut(s)	1113
BspLI	GGNNCC	2 cut(s)	414, 1140
BspMAI	CTGCAG	1 cut(s)	301
BspPI	GGATC	4 cut(s)	756, 1015, 1069, 1179
BsrDI	GCAATG	2 cut(s)	486, 594
BsrI	ACTGG	4 cut(s)	320, 690, 1060, 1162
BssECI	CCNNGG	3 cut(s)	786, 1078, 1171
BssMI	GATC	8 cut(s)	155, 658, 748, 1007, 1024, 1074, 1180, 1184
BssT1I	CCWWGG	1 cut(s)	1078
Bst2UI	CCWGG	1 cut(s)	788
Bst4CI	ACNGT	3 cut(s)	798, 811, 1048
Bst6I	CTCTTC	1 cut(s)	259
BstAPI	GCANNNNNTGC	1 cut(s)	982
BstC8I	GCNNGC	7 cut(s)	301, 333, 528, 650, 728, 838, 971
BstDEI	CTNAG	4 cut(s)	191, 226, 378, 531
BstDSI	CCRYGG	2 cut(s)	1078, 1171
BstF5I	GGATG	1 cut(s)	694
BstKTI	GATC	8 cut(s)	158, 661, 751, 1010, 1027, 1077, 1183, 1187
BstMAI	GTCTC	3 cut(s)	216, 374, 817
BstMBI	GATC	8 cut(s)	155, 658, 748, 1007, 1024, 1074, 1180, 1184
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 940, 982
BstNI	CCWGG	1 cut(s)	788
BstNSI	RCATGY	1 cut(s)	730
BstSCI	CCNGG	3 cut(s)	643, 744, 786
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	4 cut(s)	42, 283, 331, 985
BstX2I	RGATCY	2 cut(s)	658, 1024
BstYI	RGATCY	2 cut(s)	658, 1024
Bsu15I	ATCGAT	1 cut(s)	1183
BsuRI	GGCC	3 cut(s)	472, 889, 1170
BsuTUI	ATCGAT	1 cut(s)	1183
BtgI	CCRYGG	2 cut(s)	1078, 1171
BtsCI	GGATG	1 cut(s)	694
BtsIMutI	CAGTG	3 cut(s)	180, 1053, 1155
Cac8I	GCNNGC	7 cut(s)	301, 333, 528, 650, 728, 838, 971
CciI	TCATGA	1 cut(s)	1113
ClaI	ATCGAT	1 cut(s)	1183
CviAII	CATG	5 cut(s)	212, 727, 1079, 1093, 1114
DdeI	CTNAG	4 cut(s)	191, 226, 378, 531
DpnI	GATC	8 cut(s)	157, 660, 750, 1009, 1026, 1076, 1182, 1186
DpnII	GATC	8 cut(s)	155, 658, 748, 1007, 1024, 1074, 1180, 1184
DraI	TTTAAA	1 cut(s)	559
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
EciI	GGCGGA	1 cut(s)	160
Ecl136II	GAGCTC	3 cut(s)	505, 628, 1119
Eco130I	CCWWGG	1 cut(s)	1078
Eco24I	GRGCYC	4 cut(s)	389, 507, 630, 1121
Eco32I	GATATC	1 cut(s)	1111
Eco53kI	GAGCTC	3 cut(s)	505, 628, 1119
Eco57I	CTGAAG	2 cut(s)	24, 596
EcoICRI	GAGCTC	3 cut(s)	505, 628, 1119
EcoRI	GAATTC	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	786
EcoRV	GATATC	1 cut(s)	1111
EcoT14I	CCWWGG	1 cut(s)	1078
EcoT38I	GRGCYC	4 cut(s)	389, 507, 630, 1121
ErhI	CCWWGG	1 cut(s)	1078
Esp3I	CGTCTC	1 cut(s)	374
FaeI	CATG	5 cut(s)	215, 730, 1082, 1096, 1117
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	5 cut(s)	211, 726, 1078, 1092, 1113
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	5 cut(s)	31, 297, 345, 974, 986
FokI	GGATG	1 cut(s)	701
FriOI	GRGCYC	4 cut(s)	389, 507, 630, 1121
Fsp4HI	GCNGC	5 cut(s)	31, 297, 345, 974, 986
FspBI	CTAG	2 cut(s)	594, 1035
GluI	GCNGC	5 cut(s)	31, 297, 345, 974, 986
GsaI	CCCAGC	1 cut(s)	344
HaeIII	GGCC	3 cut(s)	472, 889, 1170
HapII	CCGG	2 cut(s)	644, 745
Hin1II	CATG	5 cut(s)	215, 730, 1082, 1096, 1117
HindIII	AAGCTT	2 cut(s)	947, 1065
HinfI	GANTC	2 cut(s)	137, 926
HpaII	CCGG	2 cut(s)	644, 745
HphI	GGTGA	5 cut(s)	593, 596, 1042, 1072, 1145
Hpy166II	GTNNAC	1 cut(s)	721
Hpy188I	TCNGA	1 cut(s)	542
Hpy188III	TCNNGA	5 cut(s)	153, 325, 1011, 1114, 1188
Hpy8I	GTNNAC	1 cut(s)	721
HpyAV	CCTTC	1 cut(s)	620
HpyCH4III	ACNGT	3 cut(s)	798, 811, 1048
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 940, 982
HpyF3I	CTNAG	4 cut(s)	191, 226, 378, 531
Hsp92II	CATG	5 cut(s)	215, 730, 1082, 1096, 1117
Kzo9I	GATC	8 cut(s)	155, 658, 748, 1007, 1024, 1074, 1180, 1184
LmnI	GCTCC	3 cut(s)	282, 523, 625
Lsp1109I	GCAGC	4 cut(s)	42, 283, 331, 985
LweI	GCATC	3 cut(s)	17, 318, 574
MaeI	CTAG	2 cut(s)	594, 1035
MaeIII	GTNAC	2 cut(s)	214, 1048
MalI	GATC	8 cut(s)	157, 660, 750, 1009, 1026, 1076, 1182, 1186
MboI	GATC	8 cut(s)	155, 658, 748, 1007, 1024, 1074, 1180, 1184
MboII	GAAGA	3 cut(s)	246, 682, 841
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	2 cut(s)	658, 1024
MhlI	GDGCHC	5 cut(s)	148, 389, 507, 630, 1121
MluCI	AATT	5 cut(s)	161, 207, 262, 417, 1041
MlyI	GAGTC	1 cut(s)	935
MmeI	TCCRAC	1 cut(s)	257
MnlI	CCTC	9 cut(s)	95, 102, 279, 286, 290, 462, 514, 1095, 1129
MseI	TTAA	3 cut(s)	558, 665, 1127
MslI	CAYNNNNRTG	3 cut(s)	56, 962, 1058
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	2 cut(s)	644, 745
MspR9I	CCNGG	3 cut(s)	645, 746, 788
MunI	CAATTG	1 cut(s)	417
Mva1269I	GAATGC	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	788
MwoI	GCNNNNNNNGC	3 cut(s)	341, 940, 982
NciI	CCSGG	2 cut(s)	645, 746
NcoI	CCATGG	1 cut(s)	1078
NdeII	GATC	8 cut(s)	155, 658, 748, 1007, 1024, 1074, 1180, 1184
NlaIII	CATG	5 cut(s)	215, 730, 1082, 1096, 1117
NlaIV	GGNNCC	2 cut(s)	414, 1140
NmuCI	GTSAC	2 cut(s)	214, 1048
NspI	RCATGY	1 cut(s)	730
OliI	CACNNNNGTG	1 cut(s)	1058
PaeI	GCATGC	1 cut(s)	730
PagI	TCATGA	1 cut(s)	1113
PctI	GAATGC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	137
PfoI	TCCNGGA	1 cut(s)	744
PkrI	GCNGC	5 cut(s)	32, 298, 346, 975, 987
PleI	GAGTC	1 cut(s)	934
PpsI	GAGTC	1 cut(s)	934
Psp124BI	GAGCTC	3 cut(s)	507, 630, 1121
Psp6I	CCWGG	1 cut(s)	786
PspFI	CCCAGC	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	786
PspN4I	GGNNCC	2 cut(s)	414, 1140
PstI	CTGCAG	1 cut(s)	301
PsuI	RGATCY	2 cut(s)	658, 1024
PvuII	CAGCTG	1 cut(s)	344
RseI	CAYNNNNRTG	3 cut(s)	56, 962, 1058
SacI	GAGCTC	3 cut(s)	507, 630, 1121
SaqAI	TTAA	3 cut(s)	558, 665, 1127
SatI	GCNGC	5 cut(s)	31, 297, 345, 974, 986
Sau3AI	GATC	8 cut(s)	155, 658, 748, 1007, 1024, 1074, 1180, 1184
SchI	GAGTC	1 cut(s)	935
ScrFI	CCNGG	3 cut(s)	645, 746, 788
SduI	GDGCHC	5 cut(s)	148, 389, 507, 630, 1121
SfaNI	GCATC	3 cut(s)	17, 318, 574
SfcI	CTRYAG	1 cut(s)	297
SmiMI	CAYNNNNRTG	3 cut(s)	56, 962, 1058
SphI	GCATGC	1 cut(s)	730
Sse9I	AATT	5 cut(s)	161, 207, 262, 417, 1041
SsiI	CCGC	5 cut(s)	108, 171, 456, 607, 986
SspMI	CTAG	2 cut(s)	594, 1035
SstI	GAGCTC	3 cut(s)	507, 630, 1121
StyD4I	CCNGG	3 cut(s)	643, 744, 786
StyI	CCWWGG	1 cut(s)	1078
TaaI	ACNGT	3 cut(s)	798, 811, 1048
TaqI	TCGA	3 cut(s)	954, 1073, 1183
TaqII	GACCGA	1 cut(s)	39
TasI	AATT	5 cut(s)	161, 207, 262, 417, 1041
TauI	GCSGC	1 cut(s)	988
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	3 cut(s)	558, 665, 1127
Tru9I	TTAA	3 cut(s)	558, 665, 1127
TscAI	CASTG	3 cut(s)	187, 1060, 1162
TseFI	GTSAC	2 cut(s)	214, 1048
TseI	GCWGC	4 cut(s)	30, 296, 344, 973
Tsp45I	GTSAC	2 cut(s)	214, 1048
TspDTI	ATGAA	3 cut(s)	200, 729, 1109
TspRI	CASTG	3 cut(s)	187, 1060, 1162
XapI	RAATTY	1 cut(s)	207
XceI	RCATGY	1 cut(s)	730
XspI	CTAG	2 cut(s)	594, 1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.