Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0011084

Physical Location & Seq

Genomic Coordinates Reverse (-)

440381 .. 444221

Gene Structure 3841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGATACGACGTCGTCCTCGTTTTTGTTTGGCTCCTTTTTTCTAACTTCGCAACTACGAAGAAAGCCCGTCACACTCTCTCTCCTGCCGTCGGACGAACTTCGGGTTGAAGAAAATGCAGTAGACGAAAAACCAGCACAAACAGCAACAAACTCTCAACAGCAGCAGCTGAACATGAACAGTCGAAACGTCGTCGTGTGCGACAATGGCACCGGGTATGTAAAATGTGGATTTGCTGGAGAGAACTTCCCCACCTCTGTGTTCCCTTGCGTAGTTGGAAGGCCACTGCTTCGCTATGAGGAATCACTTATGGAACAAGAAATCAAGGATGTCATTGTTGGAGAAGCTTGCGCCGAATTTCGGCATCAATTGGATATAAATTACCCAGTTAACAATGGCATTGTGCAAAACTGGGATGACATGGGCCATGTCTGGGACCATGCATTCTACAGTGAACTAAAGATAGATCCTACTGAGTGTCAGATATTACTCACAGACCCGCCTCTTAATCCTTCAAAGAACCGTGAAAAAATGGTTGAGACCATGTTTGAGAAGTACAATTTTGCTGGTGTCTTCATTCAAATTCAAGCTGTTTTAACATTGTATGCTCAAGGCTTGCTAACCGGATTAGTTATTGACTCTGGTGATGGTGTTACACATGTGGTTCCAGTTGTCGATGGCTACTCATTTCCTCATCTTACGAAGCGAATGAATGTAGCTGGCCGACACATAACATCTTATCTTGTTGATTTGCTCTCACGGAGGGGGTATTCAATGAATAGGACAGCTGATTTTGAGACCGTTAGGGAAATCAAGGAGAAGCTTTGCTATATTAGTTATGATTACAAAAGGGAGTATCAGTTGGGACTTGAGACCACCATACTTGTAAAAAATTACACTCTGCCAGATGGAAGGGTGATTAAAGTTGGCACCGAAAGGTTCCAGGCTCCTGAGGCTCTTTTCACTCCTGAACTTATAGATGTTGAAGGTGATGGAATGGCTGACATGGTATTCCGCTGTATTCAGGAAATGGATATTGACAACAGGATGATGCTCTACCAGCATATTGTTTTAAGTGGAGGAAGCACGATGTATCCTGGACTACCCAGTCGTTTGGAGAAGGAAATACTGGACCGTTATCTTGACGTTGTTTTGAAGGGTAACAAAGATGGACTCAAGAAATTGCGATTGCGAATTGAAGATCCTCCACGAAGAAAGCACATGGTGTATCTAGGTGGTGCAGTCCTTGCGGGAATTATGAAGGATGCTCCTGAATTTTGGATCACAAGGGAGGATTATCTAGAAGAAGGAGTTGCTTGTCTAAGCAAGTGTGGTCAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0009653 GO:0009825 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015629 GO:0016043 GO:0016049 GO:0030029 GO:0030036 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0097435

KEGG Pathways

Metabolic & Signaling

ko04138 ko04530 map04138 map04530

Pfam Domains

Protein Families

Actin

Protein Analysis

448

Amino Acids

50.68

Weight (kDa)

5.19

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	62 - 441	3.4e-97	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27000
fragaria_vesca	FvH4_6g53870
malus_domestica	MD09G1007700.v1.1 MD17G1011600.v1.1
prunus_persica	Prupe.3G309300_v2.0.a1 Prupe.3G309300_v2.0.a1
pyrus_communis	pycom111g00600 pycom17g00630
rosa_chinensis	RchiOBHm_Chr2g0176031
rosa_laevigata	RLG00000022374
rosa_multiflora	Rmu_sc0011610.1_g000002 Rmu_sc0012513.1_g000004 Rmu_sc0012513.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076840
rosa_rugosa	Rorug02G0589600 Rorug02G0589700
rosa_samantha	Rh2AG668600 Rh2CG643100 Rh2DG693900
rosa_wichuraiana	Rw2G054830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1107
AatII	GACGTC	1 cut(s)	14
AccB1I	GGYRCC	2 cut(s)	209, 929
AccI	GTMKAC	1 cut(s)	123
AciI	CCGC	3 cut(s)	500, 1015, 1250
AclWI	GGATC	3 cut(s)	461, 1196, 1289
AcoI	YGGCCR	1 cut(s)	721
AcsI	RAATTY	3 cut(s)	356, 582, 1274
AcyI	GRCGYC	1 cut(s)	11
AdeI	CACNNNGTG	1 cut(s)	1225
AfaI	GTAC	1 cut(s)	557
AfiI	CCNNNNNNNGG	3 cut(s)	91, 360, 433
AflIII	ACRYGT	1 cut(s)	658
AgsI	TTSAA	8 cut(s)	110, 516, 581, 587, 774, 986, 1156, 1199
AjnI	CCWGG	2 cut(s)	942, 1096
AleI	CACNNNNGTG	1 cut(s)	257
AluBI	AGCT	6 cut(s)	169, 347, 590, 719, 788, 823
AluI	AGCT	6 cut(s)	169, 347, 590, 719, 788, 823
Alw26I	GTCTC	3 cut(s)	533, 791, 866
AlwI	GGATC	3 cut(s)	461, 1196, 1289
AlwNI	CAGNNNCTG	1 cut(s)	169
AoxI	GGCC	4 cut(s)	281, 424, 721, 1338
ApeKI	GCWGC	2 cut(s)	163, 166
ApoI	RAATTY	3 cut(s)	356, 582, 1274
AspLEI	GCGC	1 cut(s)	353
AspS9I	GGNCC	3 cut(s)	424, 436, 1132
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	3 cut(s)	656, 928, 1001
AvaII	GGWCC	2 cut(s)	436, 1132
AxyI	CCTNAGG	1 cut(s)	951
BanI	GGYRCC	2 cut(s)	209, 929
BbsI	GAAGAC	1 cut(s)	565
BbvI	GCAGC	2 cut(s)	175, 178
BccI	CCATC	5 cut(s)	641, 671, 902, 986, 1163
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	2 cut(s)	944, 1098
BciVI	GTATCC	1 cut(s)	1104
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	3 cut(s)	533, 791, 866
BfaI	CTAG	2 cut(s)	1232, 1301
BfmI	CTRYAG	1 cut(s)	448
BfuI	GTATCC	1 cut(s)	1104
BisI	GCNGC	2 cut(s)	164, 167
BlsI	GCNGC	2 cut(s)	165, 168
Bme1390I	CCNGG	3 cut(s)	214, 944, 1098
Bme18I	GGWCC	2 cut(s)	436, 1132
BmgT120I	GGNCC	3 cut(s)	424, 436, 1132
BmiI	GGNNCC	7 cut(s)	34, 211, 437, 666, 931, 941, 948
BmrFI	CCNGG	3 cut(s)	214, 944, 1098
BmrI	ACTGGG	3 cut(s)	380, 421, 1101
BmsI	GCATC	3 cut(s)	373, 1041, 1255
BmuI	ACTGGG	3 cut(s)	380, 421, 1101
BpiI	GAAGAC	1 cut(s)	565
BpmI	CTGGAG	1 cut(s)	258
BpuEI	CTTGAG	3 cut(s)	594, 890, 1160
BpuMI	CCSGG	1 cut(s)	214
BsaHI	GRCGYC	1 cut(s)	11
BsaI	GGTCTC	3 cut(s)	533, 791, 866
BsaWI	WCCGGW	1 cut(s)	623
BsaXI	ACNNNNNCTCC	4 cut(s)	66, 96, 845, 875
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 360, 433
Bse1I	ACTGG	5 cut(s)	386, 416, 668, 1107, 1134
Bse21I	CCTNAGG	1 cut(s)	951
BseBI	CCWGG	2 cut(s)	944, 1098
BseGI	GGATG	4 cut(s)	334, 421, 1053, 1270
BseLI	CCNNNNNNNGG	3 cut(s)	91, 360, 433
BseMII	CTCAG	2 cut(s)	465, 942
BseNI	ACTGG	5 cut(s)	386, 416, 668, 1107, 1134
BseXI	GCAGC	2 cut(s)	175, 178
BsgI	GTGCAG	1 cut(s)	1260
BshFI	GGCC	4 cut(s)	283, 426, 723, 1340
BshNI	GGYRCC	2 cut(s)	209, 929
BsiSI	CCGG	2 cut(s)	213, 624
BslFI	GGGAC	2 cut(s)	449, 879
BslI	CCNNNNNNNGG	3 cut(s)	91, 360, 433
BsmAI	GTCTC	3 cut(s)	533, 791, 866
BsmFI	GGGAC	2 cut(s)	449, 879
BsmI	GAATGC	1 cut(s)	443
BsnI	GGCC	4 cut(s)	283, 426, 723, 1340
Bso31I	GGTCTC	3 cut(s)	533, 791, 866
Bsp143I	GATC	3 cut(s)	466, 1201, 1281
BspACI	CCGC	3 cut(s)	500, 1015, 1250
BspANI	GGCC	4 cut(s)	283, 426, 723, 1340
BspCNI	CTCAG	2 cut(s)	466, 943
BspLI	GGNNCC	7 cut(s)	34, 211, 437, 666, 931, 941, 948
BspPI	GGATC	3 cut(s)	461, 1196, 1289
BspT107I	GGYRCC	2 cut(s)	209, 929
BspTNI	GGTCTC	3 cut(s)	533, 791, 866
BsrI	ACTGG	5 cut(s)	386, 416, 668, 1107, 1134
BssMI	GATC	3 cut(s)	466, 1201, 1281
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	2 cut(s)	944, 1098
Bst4CI	ACNGT	5 cut(s)	182, 452, 524, 802, 1136
BstACI	GRCGYC	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	1247
BstC8I	GCNNGC	3 cut(s)	349, 617, 721
BstDEI	CTNAG	3 cut(s)	474, 951, 1322
BstF5I	GGATG	4 cut(s)	334, 421, 1053, 1270
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	3 cut(s)	469, 1204, 1284
BstMAI	GTCTC	3 cut(s)	533, 791, 866
BstMBI	GATC	3 cut(s)	466, 1201, 1281
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 207, 953, 1060, 1247
BstNI	CCWGG	2 cut(s)	944, 1098
BstNSI	RCATGY	1 cut(s)	662
BstSCI	CCNGG	3 cut(s)	212, 942, 1096
BstSFI	CTRYAG	1 cut(s)	448
BstV1I	GCAGC	2 cut(s)	175, 178
BstV2I	GAAGAC	1 cut(s)	565
BstX2I	RGATCY	2 cut(s)	466, 1201
BstXI	CCANNNNNNTGG	1 cut(s)	1114
BstYI	RGATCY	2 cut(s)	466, 1201
Bsu36I	CCTNAGG	1 cut(s)	951
BsuI	GTATCC	1 cut(s)	1104
BsuRI	GGCC	4 cut(s)	283, 426, 723, 1340
BtsCI	GGATG	4 cut(s)	334, 421, 1053, 1270
BtsI	GCAGTG	1 cut(s)	284
BtsIMutI	CAGTG	2 cut(s)	284, 457
Cac8I	GCNNGC	3 cut(s)	349, 617, 721
CaiI	CAGNNNCTG	1 cut(s)	169
CfoI	GCGC	1 cut(s)	353
Cfr13I	GGNCC	3 cut(s)	424, 436, 1132
Csp6I	GTAC	1 cut(s)	556
CspCI	CAANNNNNGTGG	2 cut(s)	865, 900
CviAII	CATG	8 cut(s)	175, 421, 428, 440, 544, 659, 1006, 1222
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	3 cut(s)	474, 951, 1322
DpnI	GATC	3 cut(s)	468, 1203, 1283
DpnII	GATC	3 cut(s)	466, 1201, 1281
DraIII	CACNNNGTG	1 cut(s)	1225
DrdI	GACNNNNNNGTC	1 cut(s)	1107
DseDI	GACNNNNNNGTC	1 cut(s)	1107
EaeI	YGGCCR	1 cut(s)	721
Eco147I	AGGCCT	1 cut(s)	1340
Eco31I	GGTCTC	3 cut(s)	533, 791, 866
Eco47I	GGWCC	2 cut(s)	436, 1132
Eco81I	CCTNAGG	1 cut(s)	951
EcoRII	CCWGG	2 cut(s)	942, 1096
EcoT22I	ATGCAT	1 cut(s)	445
FaeI	CATG	8 cut(s)	178, 424, 431, 443, 547, 662, 1009, 1225
FaqI	GGGAC	2 cut(s)	449, 879
FatI	CATG	8 cut(s)	174, 420, 427, 439, 543, 658, 1005, 1221
FauI	CCCGC	2 cut(s)	507, 1243
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	164, 167
FokI	GGATG	4 cut(s)	341, 428, 1060, 1277
Fsp4HI	GCNGC	2 cut(s)	164, 167
FspBI	CTAG	2 cut(s)	1232, 1301
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	2 cut(s)	164, 167
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	4 cut(s)	283, 426, 723, 1340
HapII	CCGG	2 cut(s)	213, 624
HhaI	GCGC	1 cut(s)	353
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	8 cut(s)	178, 424, 431, 443, 547, 662, 1009, 1225
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HindIII	AAGCTT	2 cut(s)	345, 821
HinfI	GANTC	3 cut(s)	302, 638, 1173
HpaI	GTTAAC	1 cut(s)	391
HpaII	CCGG	2 cut(s)	213, 624
HphI	GGTGA	3 cut(s)	656, 928, 1001
Hpy166II	GTNNAC	3 cut(s)	124, 391, 455
Hpy188I	TCNGA	2 cut(s)	94, 483
Hpy188III	TCNNGA	7 cut(s)	950, 968, 1025, 1142, 1177, 1271, 1301
Hpy8I	GTNNAC	3 cut(s)	124, 391, 455
Hpy99I	CGWCG	5 cut(s)	13, 16, 94, 194, 197
HpyAV	CCTTC	8 cut(s)	273, 522, 906, 980, 1114, 1150, 1255, 1301
HpyCH4III	ACNGT	5 cut(s)	182, 452, 524, 802, 1136
HpyCH4IV	ACGT	3 cut(s)	11, 189, 1146
HpyCH4V	TGCA	4 cut(s)	119, 406, 443, 1241
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 207, 953, 1060, 1247
HpyF3I	CTNAG	3 cut(s)	474, 951, 1322
HpySE526I	ACGT	3 cut(s)	11, 189, 1146
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	8 cut(s)	178, 424, 431, 443, 547, 662, 1009, 1225
HspAI	GCGC	1 cut(s)	351
KspAI	GTTAAC	1 cut(s)	391
Kzo9I	GATC	3 cut(s)	466, 1201, 1281
LmnI	GCTCC	3 cut(s)	38, 952, 1273
Lsp1109I	GCAGC	2 cut(s)	175, 178
LweI	GCATC	3 cut(s)	373, 1041, 1255
MaeI	CTAG	2 cut(s)	1232, 1301
MaeII	ACGT	3 cut(s)	11, 189, 1146
MaeIII	GTNAC	3 cut(s)	70, 652, 1160
MalI	GATC	3 cut(s)	468, 1203, 1283
MboI	GATC	3 cut(s)	466, 1201, 1281
MboII	GAAGA	6 cut(s)	72, 122, 565, 1211, 1224, 1316
MfeI	CAATTG	1 cut(s)	368
MflI	RGATCY	2 cut(s)	466, 1201
MlyI	GAGTC	2 cut(s)	632, 1167
MmeI	TCCRAC	3 cut(s)	72, 256, 319
Mph1103I	ATGCAT	1 cut(s)	445
MseI	TTAA	5 cut(s)	390, 507, 596, 921, 1073
MslI	CAYNNNNRTG	1 cut(s)	257
MspA1I	CMGCKG	3 cut(s)	169, 788, 1017
MspI	CCGG	2 cut(s)	213, 624
MspR9I	CCNGG	3 cut(s)	214, 944, 1098
MunI	CAATTG	1 cut(s)	368
Mva1269I	GAATGC	1 cut(s)	443
MvaI	CCWGG	2 cut(s)	944, 1098
MwoI	GCNNNNNNNGC	5 cut(s)	143, 207, 953, 1060, 1247
NciI	CCSGG	1 cut(s)	214
NdeII	GATC	3 cut(s)	466, 1201, 1281
NlaIII	CATG	8 cut(s)	178, 424, 431, 443, 547, 662, 1009, 1225
NlaIV	GGNNCC	7 cut(s)	34, 211, 437, 666, 931, 941, 948
NmuCI	GTSAC	1 cut(s)	70
NsiI	ATGCAT	1 cut(s)	445
NspI	RCATGY	1 cut(s)	662
OliI	CACNNNNGTG	1 cut(s)	257
PceI	AGGCCT	1 cut(s)	1340
PciI	ACATGT	1 cut(s)	658
PcsI	WCGNNNNNNNCGW	2 cut(s)	17, 198
PctI	GAATGC	1 cut(s)	443
PfeI	GAWTC	1 cut(s)	302
PflFI	GACNNNGTC	1 cut(s)	13
PfoI	TCCNGGA	1 cut(s)	1096
PkrI	GCNGC	2 cut(s)	165, 168
PleI	GAGTC	2 cut(s)	632, 1167
PpsI	GAGTC	2 cut(s)	632, 1167
PscI	ACATGT	1 cut(s)	658
Psp6I	CCWGG	2 cut(s)	942, 1096
PspGI	CCWGG	2 cut(s)	942, 1096
PspN4I	GGNNCC	7 cut(s)	34, 211, 437, 666, 931, 941, 948
PspPI	GGNCC	3 cut(s)	424, 436, 1132
PstNI	CAGNNNCTG	1 cut(s)	169
PsuI	RGATCY	2 cut(s)	466, 1201
PsyI	GACNNNGTC	1 cut(s)	13
PvuII	CAGCTG	2 cut(s)	169, 788
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	5 cut(s)	390, 507, 596, 921, 1073
SatI	GCNGC	2 cut(s)	164, 167
Sau3AI	GATC	3 cut(s)	466, 1201, 1281
Sau96I	GGNCC	3 cut(s)	424, 436, 1132
SchI	GAGTC	2 cut(s)	632, 1167
ScrFI	CCNGG	3 cut(s)	214, 944, 1098
SfaNI	GCATC	3 cut(s)	373, 1041, 1255
SfcI	CTRYAG	1 cut(s)	448
SinI	GGWCC	2 cut(s)	436, 1132
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	3 cut(s)	609, 869, 1175
SmoI	CTYRAG	3 cut(s)	609, 869, 1175
SseBI	AGGCCT	1 cut(s)	1340
SsiI	CCGC	3 cut(s)	500, 1015, 1250
SspMI	CTAG	2 cut(s)	1232, 1301
StuI	AGGCCT	1 cut(s)	1340
StyD4I	CCNGG	3 cut(s)	212, 942, 1096
TaaI	ACNGT	5 cut(s)	182, 452, 524, 802, 1136
TaiI	ACGT	3 cut(s)	14, 192, 1149
TaqI	TCGA	2 cut(s)	184, 675
TatI	WGTACW	1 cut(s)	555
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	5 cut(s)	390, 507, 596, 921, 1073
Tru9I	TTAA	5 cut(s)	390, 507, 596, 921, 1073
TscAI	CASTG	2 cut(s)	291, 457
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	2 cut(s)	163, 166
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	5 cut(s)	191, 565, 725, 791, 1274
TspGWI	ACGGA	1 cut(s)	775
TspRI	CASTG	2 cut(s)	291, 457
Tth111I	GACNNNGTC	1 cut(s)	13
VpaK11BI	GGWCC	2 cut(s)	436, 1132
XapI	RAATTY	3 cut(s)	356, 582, 1274
XbaI	TCTAGA	1 cut(s)	1300
XceI	RCATGY	1 cut(s)	662
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	2 cut(s)	1232, 1301
ZraI	GACGTC	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.