pycom17g01520

PGAP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0020444
Physical Location & Seq
Forward (+)
1017550 .. 1018978
1429 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g01520.3

Sequence Viewer

Length: 927 bp
ATGGTCTCATTGACTTGTTATTTACTTGCTAATGGCTTCGTAATTGTTCTTATTTTGATATCCCAACTTATCTTCTATGCGGCCGCTGTTGTACATATTTTCATCAATACAAGGTTTCATTTGGGGGAAAAAAGTGTTCAACGGTTTATTAATCTTTCCTCCGGTTTCTTTTCATTGAAGGTGGTAAGGGTTTTAAGAGCCAATCCGGTATACGTTACAGCACTTGTTGCAATTACTCTGGTGTGCTTGGTTCATGCAGCATTCGGTCTATTTATAATCTTGTTATTTGATGCTTTGAGCTGTCACAGTGCACTTTGCAGTTTTTTGAGCACTTCATTTCGCAGCCATACACGAAGACACAAATTATTTGATAGTAAAAAGGAAGGCAATGACCGCTCCTGTCAACTTCCATCCAAAAGTGATGGTATATCAAACCAGAATATTCATTCTGAAGATTGCTGCTCCAACAGTCCAGTCTCTTCGAAAAGTTTTGGTGAAACACAGTTAGAGTTATTCCATCATCGGCATGGGCTGTTTATTTTGCATCTTGCTGCAGCACTCATGTTTGTCCCATCACTTGTCGCCTGGTTTCAGAGAATAGGGATGGGTCATAGCTTCCCGTGGCTCTTGGATTCATTTCTTTGCACCGGTGTGATCCTTCATGGAATCTTCACCGCAAAGCCTGAGTCCAGTTCCTTCTTGGTTTCTTTCCCTGGCTTCCGAAACTGTGAAGTGAGTCTGAATTTTCTGTACCTGCTAGCTGGATACTACTCATATATCTCTTCCCTGGCCTTGGCTCCATACAGAGCATTTTATGGTATGGCTGCTATAGGCTTCACTTGCTGTGCTTTGACGTTCTTACAAAGACGGAACAGAGAAAGGGGAGAGCCCCATTTTGTTAGCCGAAAGCACTCTCACAGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PGAP1

Protein Analysis

309

Amino Acids

34.57

Weight (kDa)

9.36

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020444)

Species Orthologous Gene IDs
pyrus_communis pycom111g01470 pycom17g01520
rosa_laevigata RLG00000022258
rosa_multiflora Rmu_sc0043101.1_g000001
rosa_samantha Rh2CG631200 Rh2DG681800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 762
AccBSI CCGCTC 1 cut(s) 396
AccI GTMKAC 1 cut(s) 210
AciI CCGC 4 cut(s) 80, 84, 394, 675
AclWI GGATC 1 cut(s) 649
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 1 cut(s) 742
AcuI CTGAAG 1 cut(s) 471
AfaI GTAC 2 cut(s) 93, 752
AfiI CCNNNNNNNGG 1 cut(s) 793
AgeI ACCGGT 1 cut(s) 647
AgsI TTSAA 2 cut(s) 140, 178
AjnI CCWGG 3 cut(s) 584, 712, 786
AleI CACNNNNGTG 1 cut(s) 650
AluBI AGCT 3 cut(s) 300, 615, 761
AluI AGCT 3 cut(s) 300, 615, 761
Alw21I GWGCWC 2 cut(s) 313, 332
Alw26I GTCTC 2 cut(s) 10, 481
Alw44I GTGCAC 1 cut(s) 309
AlwI GGATC 1 cut(s) 649
AoxI GGCC 2 cut(s) 81, 789
ApaLI GTGCAC 1 cut(s) 309
ApeKI GCWGC 6 cut(s) 257, 342, 459, 551, 554, 824
ApoI RAATTY 1 cut(s) 742
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
AseI ATTAAT 1 cut(s) 150
AsiGI ACCGGT 1 cut(s) 647
AsuHPI GGTGA 2 cut(s) 506, 664
AsuII TTCGAA 1 cut(s) 482
AsuNHI GCTAGC 1 cut(s) 757
BaeGI GKGCMC 1 cut(s) 313
BanII GRGCYC 1 cut(s) 891
BbsI GAAGAC 1 cut(s) 361
Bbv12I GWGCWC 2 cut(s) 313, 332
BbvI GCAGC 6 cut(s) 269, 354, 446, 538, 566, 811
BccI CCATC 5 cut(s) 416, 418, 525, 580, 598
BciT130I CCWGG 3 cut(s) 586, 714, 788
BciVI GTATCC 1 cut(s) 758
BcoDI GTCTC 2 cut(s) 10, 481
BfaI CTAG 1 cut(s) 758
BfmI CTRYAG 2 cut(s) 552, 828
BfuAI ACCTGC 1 cut(s) 762
BfuI GTATCC 1 cut(s) 758
BisI GCNGC 8 cut(s) 81, 84, 258, 343, 460, 552, 555, 825
BlsI GCNGC 8 cut(s) 82, 85, 259, 344, 461, 553, 556, 826
Bme1390I CCNGG 3 cut(s) 586, 714, 788
BmiI GGNNCC 1 cut(s) 798
BmrFI CCNGG 3 cut(s) 586, 714, 788
BmsI GCATC 2 cut(s) 280, 553
BmtI GCTAGC 1 cut(s) 761
BpiI GAAGAC 1 cut(s) 361
Bpu14I TTCGAA 1 cut(s) 482
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 4 cut(s) 620, 712, 786, 792
BsaWI WCCGGW 3 cut(s) 161, 205, 647
Bsc4I CCNNNNNNNGG 1 cut(s) 793
Bse118I RCCGGY 1 cut(s) 647
Bse1I ACTGG 2 cut(s) 473, 690
Bse3DI GCAATG 1 cut(s) 394
BseBI CCWGG 3 cut(s) 586, 714, 788
BseDI CCNNGG 4 cut(s) 620, 712, 786, 792
BseGI GGATG 2 cut(s) 410, 609
BseLI CCNNNNNNNGG 1 cut(s) 793
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 1 cut(s) 675
BseNI ACTGG 2 cut(s) 473, 690
BseSI GKGCMC 1 cut(s) 313
BseX3I CGGCCG 1 cut(s) 81
BseXI GCAGC 6 cut(s) 269, 354, 446, 538, 566, 811
Bsh1285I CGRYCG 1 cut(s) 84
BshFI GGCC 2 cut(s) 83, 791
BshTI ACCGGT 1 cut(s) 647
BsiEI CGRYCG 1 cut(s) 84
BsiHKAI GWGCWC 2 cut(s) 313, 332
BsiSI CCGG 3 cut(s) 162, 206, 648
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 1 cut(s) 793
BsmAI GTCTC 2 cut(s) 10, 481
BsmFI GGGAC 1 cut(s) 554
BsmI GAATGC 1 cut(s) 260
BsnI GGCC 2 cut(s) 83, 791
Bso31I GGTCTC 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 482
Bsp1286I GDGCHC 3 cut(s) 313, 332, 891
Bsp1407I TGTACA 1 cut(s) 91
Bsp143I GATC 1 cut(s) 654
BspACI CCGC 4 cut(s) 80, 84, 394, 675
BspANI GGCC 2 cut(s) 83, 791
BspCNI CTCAG 1 cut(s) 676
BspLI GGNNCC 1 cut(s) 798
BspMAI CTGCAG 1 cut(s) 556
BspMI ACCTGC 1 cut(s) 762
BspOI GCTAGC 1 cut(s) 761
BspPI GGATC 1 cut(s) 649
BspT104I TTCGAA 1 cut(s) 482
BspTNI GGTCTC 1 cut(s) 10
BsrBI CCGCTC 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 647
BsrGI TGTACA 1 cut(s) 91
BsrI ACTGG 2 cut(s) 473, 690
BssAI RCCGGY 1 cut(s) 647
BssECI CCNNGG 4 cut(s) 620, 712, 786, 792
BssMI GATC 1 cut(s) 654
BssNAI GTATAC 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 792
Bst1107I GTATAC 1 cut(s) 211
Bst2UI CCWGG 3 cut(s) 586, 714, 788
Bst4CI ACNGT 5 cut(s) 144, 308, 470, 504, 728
Bst6I CTCTTC 2 cut(s) 484, 787
BstAPI GCANNNNNTGC 1 cut(s) 227
BstAUI TGTACA 1 cut(s) 91
BstBI TTCGAA 1 cut(s) 482
BstC8I GCNNGC 1 cut(s) 759
BstDEI CTNAG 1 cut(s) 684
BstDSI CCRYGG 1 cut(s) 620
BstF5I GGATG 2 cut(s) 410, 609
BstKTI GATC 1 cut(s) 657
BstMAI GTCTC 2 cut(s) 10, 481
BstMBI GATC 1 cut(s) 654
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 3 cut(s) 227, 393, 840
BstNI CCWGG 3 cut(s) 586, 714, 788
BstSCI CCNGG 3 cut(s) 584, 712, 786
BstSFI CTRYAG 2 cut(s) 552, 828
BstSLI GKGCMC 1 cut(s) 313
BstV1I GCAGC 6 cut(s) 269, 354, 446, 538, 566, 811
BstV2I GAAGAC 1 cut(s) 361
BstZ17I GTATAC 1 cut(s) 211
BstZI CGGCCG 1 cut(s) 81
BsuI GTATCC 1 cut(s) 758
BsuRI GGCC 2 cut(s) 83, 791
BtgI CCRYGG 1 cut(s) 620
BtsCI GGATG 2 cut(s) 410, 609
BtsIMutI CAGTG 1 cut(s) 313
BveI ACCTGC 1 cut(s) 762
Cac8I GCNNGC 1 cut(s) 759
CciNI GCGGCCGC 1 cut(s) 81
Cfr10I RCCGGY 1 cut(s) 647
Csp6I GTAC 2 cut(s) 92, 751
CspAI ACCGGT 1 cut(s) 647
CviAII CATG 4 cut(s) 254, 527, 562, 662
CviQI GTAC 2 cut(s) 92, 751
DdeI CTNAG 1 cut(s) 684
DpnI GATC 1 cut(s) 656
DpnII GATC 1 cut(s) 654
EaeI YGGCCR 1 cut(s) 81
EagI CGGCCG 1 cut(s) 81
Eam1104I CTCTTC 2 cut(s) 484, 787
EarI CTCTTC 2 cut(s) 484, 787
EclXI CGGCCG 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 792
Eco24I GRGCYC 1 cut(s) 891
Eco31I GGTCTC 1 cut(s) 10
Eco32I GATATC 1 cut(s) 60
Eco52I CGGCCG 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 471
EcoRII CCWGG 3 cut(s) 584, 712, 786
EcoRV GATATC 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 792
EcoT38I GRGCYC 1 cut(s) 891
ErhI CCWWGG 1 cut(s) 792
FaeI CATG 4 cut(s) 257, 530, 565, 665
FaqI GGGAC 1 cut(s) 554
FatI CATG 4 cut(s) 253, 526, 561, 661
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 8 cut(s) 81, 84, 258, 343, 460, 552, 555, 825
FokI GGATG 2 cut(s) 397, 616
FriOI GRGCYC 1 cut(s) 891
Fsp4HI GCNGC 8 cut(s) 81, 84, 258, 343, 460, 552, 555, 825
FspBI CTAG 1 cut(s) 758
GluI GCNGC 8 cut(s) 81, 84, 258, 343, 460, 552, 555, 825
HaeIII GGCC 2 cut(s) 83, 791
HapII CCGG 3 cut(s) 162, 206, 648
Hin1II CATG 4 cut(s) 257, 530, 565, 665
HincII GTYRAC 1 cut(s) 404
HindII GTYRAC 1 cut(s) 404
HinfI GANTC 4 cut(s) 632, 666, 686, 736
HpaII CCGG 3 cut(s) 162, 206, 648
HphI GGTGA 2 cut(s) 506, 664
Hpy166II GTNNAC 3 cut(s) 211, 311, 404
Hpy188I TCNGA 4 cut(s) 451, 594, 722, 741
Hpy8I GTNNAC 3 cut(s) 211, 311, 404
HpyAV CCTTC 4 cut(s) 172, 377, 668, 706
HpyCH4III ACNGT 5 cut(s) 144, 308, 470, 504, 728
HpyCH4IV ACGT 2 cut(s) 213, 854
HpyCH4V TGCA 7 cut(s) 230, 257, 311, 318, 544, 554, 645
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 393, 840
HpyF3I CTNAG 1 cut(s) 684
HpySE526I ACGT 2 cut(s) 213, 854
Hsp92II CATG 4 cut(s) 257, 530, 565, 665
Kzo9I GATC 1 cut(s) 654
LmnI GCTCC 3 cut(s) 401, 467, 802
Lsp1109I GCAGC 6 cut(s) 269, 354, 446, 538, 566, 811
LweI GCATC 2 cut(s) 280, 553
MaeI CTAG 1 cut(s) 758
MaeII ACGT 2 cut(s) 213, 854
MaeIII GTNAC 2 cut(s) 214, 302
MalI GATC 1 cut(s) 656
MbiI CCGCTC 1 cut(s) 396
MboI GATC 1 cut(s) 654
MboII GAAGA 6 cut(s) 64, 366, 464, 471, 661, 774
MhlI GDGCHC 3 cut(s) 313, 332, 891
MluCI AATT 4 cut(s) 42, 231, 362, 742
MlyI GAGTC 2 cut(s) 695, 745
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 1 cut(s) 169
MseI TTAA 2 cut(s) 150, 194
MslI CAYNNNNRTG 2 cut(s) 525, 650
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 3 cut(s) 162, 206, 648
MspR9I CCNGG 3 cut(s) 586, 714, 788
Mva1269I GAATGC 1 cut(s) 260
MvaI CCWGG 3 cut(s) 586, 714, 788
MwoI GCNNNNNNNGC 3 cut(s) 227, 393, 840
NdeII GATC 1 cut(s) 654
NheI GCTAGC 1 cut(s) 757
NlaIII CATG 4 cut(s) 257, 530, 565, 665
NlaIV GGNNCC 1 cut(s) 798
NmuCI GTSAC 1 cut(s) 302
NotI GCGGCCGC 1 cut(s) 81
NspV TTCGAA 1 cut(s) 482
OliI CACNNNNGTG 1 cut(s) 650
PctI GAATGC 1 cut(s) 260
PfeI GAWTC 2 cut(s) 632, 666
PinAI ACCGGT 1 cut(s) 647
PkrI GCNGC 8 cut(s) 82, 85, 259, 344, 461, 553, 556, 826
PleI GAGTC 2 cut(s) 694, 744
PpsI GAGTC 2 cut(s) 694, 744
PshBI ATTAAT 1 cut(s) 150
PsiI TTATAA 1 cut(s) 275
Psp6I CCWGG 3 cut(s) 584, 712, 786
PspGI CCWGG 3 cut(s) 584, 712, 786
PspN4I GGNNCC 1 cut(s) 798
PstI CTGCAG 1 cut(s) 556
RsaI GTAC 2 cut(s) 93, 752
RsaNI GTAC 2 cut(s) 92, 751
RseI CAYNNNNRTG 2 cut(s) 525, 650
SaqAI TTAA 2 cut(s) 150, 194
SatI GCNGC 8 cut(s) 81, 84, 258, 343, 460, 552, 555, 825
Sau3AI GATC 1 cut(s) 654
SchI GAGTC 2 cut(s) 695, 745
ScrFI CCNGG 3 cut(s) 586, 714, 788
SduI GDGCHC 3 cut(s) 313, 332, 891
SetI ASST 8 cut(s) 116, 183, 216, 302, 617, 756, 763, 857
SfaNI GCATC 2 cut(s) 280, 553
SfcI CTRYAG 2 cut(s) 552, 828
SfuI TTCGAA 1 cut(s) 482
SgrAI CRCCGGYG 1 cut(s) 647
SmiMI CAYNNNNRTG 2 cut(s) 525, 650
Sse9I AATT 4 cut(s) 42, 231, 362, 742
SsiI CCGC 4 cut(s) 80, 84, 394, 675
SspI AATATT 1 cut(s) 442
SspMI CTAG 1 cut(s) 758
StyD4I CCNGG 3 cut(s) 584, 712, 786
StyI CCWWGG 1 cut(s) 792
TaaI ACNGT 5 cut(s) 144, 308, 470, 504, 728
TaiI ACGT 2 cut(s) 216, 857
TaqI TCGA 1 cut(s) 482
TaqII GACCGA 1 cut(s) 254
TasI AATT 4 cut(s) 42, 231, 362, 742
TatI WGTACW 1 cut(s) 91
TauI GCSGC 2 cut(s) 83, 86
TfiI GAWTC 2 cut(s) 632, 666
Tru1I TTAA 2 cut(s) 150, 194
Tru9I TTAA 2 cut(s) 150, 194
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 6 cut(s) 257, 342, 459, 551, 554, 824
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 8 cut(s) 91, 107, 162, 242, 324, 434, 624, 650
TspGWI ACGGA 1 cut(s) 883
TspRI CASTG 1 cut(s) 313
VneI GTGCAC 1 cut(s) 309
VspI ATTAAT 1 cut(s) 150
XapI RAATTY 1 cut(s) 742
XcmI CCANNNNNNNNNTGG 2 cut(s) 524, 697
XmiI GTMKAC 1 cut(s) 210
XspI CTAG 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.