Rh2DG681800

PGAP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0020444
Physical Location & Seq
Forward (+)
90083715 .. 90093897
10183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG681800.1

Sequence Viewer

Length: 960 bp
ATGAGGGCGGAGTTCGCGTTTTATGGGACTACTCTCCTACATATTTTCATCAAGAAAAGGTTTCAATTGGGGGGAAAAACTTCTCAATGTTTTGTGAATATATCCTCTGGTTTCTGTTCATGGAAGGTGGTAAGGGTTATAAGACCTAAACCACTACTGGTTACAGCACTTGCTGCAATTACATTGGCATGCTTGGTTCATCCGGGCCATGCACGAAGACATGAATTATTTGATTATAAGAAAGACGGAAATGGTGGGCCTGACAAAATTACATTCAAACGTGATGGTATATCAGACCAGAATTTTTCTTCTGAAGATACGTCGTCCAATAGCCCAGACTCTTCAAAAAGTTTTGGTGAAACTCAATTAGAGATATTCCATCATCGGCATGGGTTGTTTATTCTGCATCTTGTTGCAACACTCATGTTTGGCCCATCATTTGTGACTTGGTTGGAGAGAATTGGGACGGATAGTAGCTTTCCATGGGTCTTGGATTCAGCTCTTTCCACAGGTGTGATCCTTCATGGTATCTTCACTTCAAATCCTCAGTTCAATTCCTTCCTGGTTTCTGTGCCACCAATCCGAAACCGAGAAGTGAGGATGCATTTACTGTACCTGTTTGCTGGACACTATTCCTATCTCTCTTCCCTGGCCTTGGCTCCTTATAGAGAATTTTATGTTATGTCTGCTGTAGGCTATACATCTATTGGTCTGACCCTCTTACAGAGATGGAACAAGGAGAAAGGAGATGCCCATTTTGTTAACCGAAGGCACTCTCACAGGCACCGACTCCCCAGAAATACTCAGATTTTACTCAGTGGCCAAATCTCCAGTAAGGTCCCTTGTGCTAATATAGGTTACGAGAACATGTTAGTCCTTCTGACGGTGTGGGACTTGTTTGCGGACTTGCTTCTATTAACCACAGTTCTGCAATCAGAATTCTCACGGACAAGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PGAP1

Protein Analysis

319

Amino Acids

36.1

Weight (kDa)

9.61

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020444)

Species Orthologous Gene IDs
pyrus_communis pycom111g01470 pycom17g01520
rosa_laevigata RLG00000022258
rosa_multiflora Rmu_sc0043101.1_g000001
rosa_samantha Rh2CG631200 Rh2DG681800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 140, 237
AccB1I GGYRCC 1 cut(s) 783
AccII CGCG 1 cut(s) 17
AciI CCGC 2 cut(s) 8, 902
AclWI GGATC 1 cut(s) 511
AcoI YGGCCR 1 cut(s) 820
AcsI RAATTY 3 cut(s) 301, 671, 938
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 1 cut(s) 614
AfiI CCNNNNNNNGG 2 cut(s) 655, 883
AflIII ACRYGT 1 cut(s) 867
AgsI TTSAA 5 cut(s) 65, 277, 345, 540, 553
AjnI CCWGG 2 cut(s) 561, 648
AleI CACNNNNGTG 1 cut(s) 512
AluBI AGCT 2 cut(s) 477, 500
AluI AGCT 2 cut(s) 477, 500
AlwI GGATC 1 cut(s) 511
AoxI GGCC 5 cut(s) 205, 257, 430, 651, 820
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 3 cut(s) 301, 671, 938
Asp700I GAANNNNTTC 1 cut(s) 79
AspS9I GGNCC 4 cut(s) 205, 257, 431, 838
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 368
AvaII GGWCC 1 cut(s) 838
BalI TGGCCA 1 cut(s) 822
BanI GGYRCC 1 cut(s) 783
BarI GAAGNNNNNNTAC 2 cut(s) 520, 552
BbsI GAAGAC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 160
BccI CCATC 4 cut(s) 278, 387, 442, 723
BciT130I CCWGG 2 cut(s) 563, 650
BcnI CCSGG 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 690
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme1390I CCNGG 3 cut(s) 204, 563, 650
Bme18I GGWCC 1 cut(s) 838
BmgT120I GGNCC 4 cut(s) 205, 257, 431, 838
BmiI GGNNCC 3 cut(s) 660, 785, 840
BmrFI CCNGG 3 cut(s) 204, 563, 650
BmsI GCATC 3 cut(s) 415, 591, 739
BpiI GAAGAC 1 cut(s) 223
BpmI CTGGAG 1 cut(s) 814
BpuMI CCSGG 1 cut(s) 204
BsaJI CCNNGG 3 cut(s) 482, 648, 654
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 655, 883
Bse1I ACTGG 2 cut(s) 162, 831
BseBI CCWGG 2 cut(s) 563, 650
BseDI CCNNGG 3 cut(s) 482, 648, 654
BseGI GGATG 2 cut(s) 199, 606
BseLI CCNNNNNNNGG 2 cut(s) 655, 883
BseMII CTCAG 3 cut(s) 560, 818, 829
BseNI ACTGG 2 cut(s) 162, 831
BseXI GCAGC 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 5 cut(s) 207, 259, 432, 653, 822
BshNI GGYRCC 1 cut(s) 783
BsiSI CCGG 1 cut(s) 203
BslFI GGGAC 4 cut(s) 40, 478, 824, 905
BslI CCNNNNNNNGG 2 cut(s) 655, 883
BsmFI GGGAC 4 cut(s) 40, 478, 824, 905
BsnI GGCC 5 cut(s) 207, 259, 432, 653, 822
Bsp143I GATC 1 cut(s) 516
Bsp19I CCATGG 1 cut(s) 482
BspACI CCGC 2 cut(s) 8, 902
BspANI GGCC 5 cut(s) 207, 259, 432, 653, 822
BspCNI CTCAG 3 cut(s) 559, 817, 828
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 3 cut(s) 660, 785, 840
BspPI GGATC 1 cut(s) 511
BspT107I GGYRCC 1 cut(s) 783
BsrI ACTGG 2 cut(s) 162, 831
BssECI CCNNGG 3 cut(s) 482, 648, 654
BssMI GATC 1 cut(s) 516
BssT1I CCWWGG 2 cut(s) 482, 654
Bst2UI CCWGG 2 cut(s) 563, 650
Bst4CI ACNGT 3 cut(s) 612, 886, 925
Bst6I CTCTTC 2 cut(s) 346, 649
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 3 cut(s) 546, 804, 815
BstDSI CCRYGG 1 cut(s) 482
BstF5I GGATG 2 cut(s) 199, 606
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 1 cut(s) 519
BstMBI GATC 1 cut(s) 516
BstMWI GCNNNNNNNGC 2 cut(s) 14, 173
BstNI CCWGG 2 cut(s) 563, 650
BstNSI RCATGY 2 cut(s) 192, 871
BstSCI CCNGG 3 cut(s) 202, 561, 648
BstSFI CTRYAG 1 cut(s) 690
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 160
BstV2I GAAGAC 1 cut(s) 223
BsuRI GGCC 5 cut(s) 207, 259, 432, 653, 822
BtgI CCRYGG 1 cut(s) 482
BtsCI GGATG 2 cut(s) 199, 606
BtsIMutI CAGTG 1 cut(s) 823
Cac8I GCNNGC 1 cut(s) 190
Cfr13I GGNCC 4 cut(s) 205, 257, 431, 838
Csp6I GTAC 1 cut(s) 613
CviAII CATG 9 cut(s) 120, 189, 209, 221, 389, 424, 483, 524, 868
CviQI GTAC 1 cut(s) 613
DdeI CTNAG 3 cut(s) 546, 804, 815
DpnI GATC 1 cut(s) 518
DpnII GATC 1 cut(s) 516
EaeI YGGCCR 1 cut(s) 820
Eam1104I CTCTTC 2 cut(s) 346, 649
EarI CTCTTC 2 cut(s) 346, 649
EciI GGCGGA 1 cut(s) 23
Eco130I CCWWGG 2 cut(s) 482, 654
Eco47I GGWCC 1 cut(s) 838
Eco57I CTGAAG 1 cut(s) 333
EcoO109I RGGNCCY 1 cut(s) 838
EcoRI GAATTC 1 cut(s) 938
EcoRII CCWGG 2 cut(s) 561, 648
EcoT14I CCWWGG 2 cut(s) 482, 654
EcoT22I ATGCAT 1 cut(s) 606
ErhI CCWWGG 2 cut(s) 482, 654
FaeI CATG 9 cut(s) 123, 192, 212, 224, 392, 427, 486, 527, 871
FaqI GGGAC 4 cut(s) 40, 478, 824, 905
FatI CATG 9 cut(s) 119, 188, 208, 220, 388, 423, 482, 523, 867
Fnu4HI GCNGC 1 cut(s) 174
FokI GGATG 2 cut(s) 186, 613
Fsp4HI GCNGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 174
GsuI CTGGAG 1 cut(s) 814
HaeIII GGCC 5 cut(s) 207, 259, 432, 653, 822
HapII CCGG 1 cut(s) 203
Hin1II CATG 9 cut(s) 123, 192, 212, 224, 392, 427, 486, 527, 871
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HinfI GANTC 3 cut(s) 338, 494, 789
HpaI GTTAAC 1 cut(s) 763
HpaII CCGG 1 cut(s) 203
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 1 cut(s) 763
Hpy188I TCNGA 7 cut(s) 295, 313, 584, 714, 807, 882, 937
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 1 cut(s) 763
Hpy99I CGWCG 1 cut(s) 325
HpyAV CCTTC 5 cut(s) 118, 530, 568, 762, 887
HpyCH4III ACNGT 3 cut(s) 612, 886, 925
HpyCH4IV ACGT 2 cut(s) 280, 320
HpyCH4V TGCA 6 cut(s) 176, 212, 406, 416, 604, 931
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 173
HpyF3I CTNAG 3 cut(s) 546, 804, 815
HpySE526I ACGT 2 cut(s) 280, 320
Hsp92II CATG 9 cut(s) 123, 192, 212, 224, 392, 427, 486, 527, 871
KspAI GTTAAC 1 cut(s) 763
Kzo9I GATC 1 cut(s) 516
LmnI GCTCC 1 cut(s) 664
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 3 cut(s) 415, 591, 739
MaeII ACGT 2 cut(s) 280, 320
MaeIII GTNAC 3 cut(s) 160, 442, 857
MalI GATC 1 cut(s) 518
MboI GATC 1 cut(s) 516
MboII GAAGA 6 cut(s) 228, 300, 326, 333, 523, 636
MfeI CAATTG 1 cut(s) 65
MlsI TGGCCA 1 cut(s) 822
MluNI TGGCCA 1 cut(s) 822
MlyI GAGTC 2 cut(s) 332, 783
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 4 cut(s) 115, 555, 591, 728
Mox20I TGGCCA 1 cut(s) 822
Mph1103I ATGCAT 1 cut(s) 606
MroXI GAANNNNTTC 1 cut(s) 79
MscI TGGCCA 1 cut(s) 822
MseI TTAA 2 cut(s) 762, 917
MslI CAYNNNNRTG 3 cut(s) 187, 387, 512
Msp20I TGGCCA 1 cut(s) 822
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 3 cut(s) 204, 563, 650
MunI CAATTG 1 cut(s) 65
MvaI CCWGG 2 cut(s) 563, 650
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 2 cut(s) 14, 173
NciI CCSGG 1 cut(s) 204
NcoI CCATGG 1 cut(s) 482
NdeII GATC 1 cut(s) 516
NlaIII CATG 9 cut(s) 123, 192, 212, 224, 392, 427, 486, 527, 871
NlaIV GGNNCC 3 cut(s) 660, 785, 840
NmuCI GTSAC 1 cut(s) 442
NsiI ATGCAT 1 cut(s) 606
NspI RCATGY 2 cut(s) 192, 871
OliI CACNNNNGTG 1 cut(s) 512
PaeI GCATGC 1 cut(s) 192
PciI ACATGT 1 cut(s) 867
PdmI GAANNNNTTC 1 cut(s) 79
PfeI GAWTC 1 cut(s) 494
PkrI GCNGC 1 cut(s) 175
PleI GAGTC 2 cut(s) 332, 783
PpsI GAGTC 2 cut(s) 332, 783
PpuMI RGGWCCY 1 cut(s) 838
PscI ACATGT 1 cut(s) 867
PsiI TTATAA 2 cut(s) 140, 237
Psp5II RGGWCCY 1 cut(s) 838
Psp6I CCWGG 2 cut(s) 561, 648
PspGI CCWGG 2 cut(s) 561, 648
PspN4I GGNNCC 3 cut(s) 660, 785, 840
PspPI GGNCC 4 cut(s) 205, 257, 431, 838
PspPPI RGGWCCY 1 cut(s) 838
RsaI GTAC 1 cut(s) 614
RsaNI GTAC 1 cut(s) 613
RseI CAYNNNNRTG 3 cut(s) 187, 387, 512
SaqAI TTAA 2 cut(s) 762, 917
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 1 cut(s) 516
Sau96I GGNCC 4 cut(s) 205, 257, 431, 838
SchI GAGTC 2 cut(s) 332, 783
ScrFI CCNGG 3 cut(s) 204, 563, 650
SfaNI GCATC 3 cut(s) 415, 591, 739
SfcI CTRYAG 1 cut(s) 690
SinI GGWCC 1 cut(s) 838
SmiMI CAYNNNNRTG 3 cut(s) 187, 387, 512
SphI GCATGC 1 cut(s) 192
SsiI CCGC 2 cut(s) 8, 902
StyD4I CCNGG 3 cut(s) 202, 561, 648
StyI CCWWGG 2 cut(s) 482, 654
TaaI ACNGT 3 cut(s) 612, 886, 925
TaiI ACGT 2 cut(s) 283, 323
TfiI GAWTC 1 cut(s) 494
Tru1I TTAA 2 cut(s) 762, 917
Tru9I TTAA 2 cut(s) 762, 917
TscAI CASTG 1 cut(s) 823
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 5 cut(s) 37, 108, 188, 237, 512
TspGWI ACGGA 2 cut(s) 261, 482
TspRI CASTG 1 cut(s) 823
VpaK11BI GGWCC 1 cut(s) 838
XapI RAATTY 3 cut(s) 301, 671, 938
XceI RCATGY 2 cut(s) 192, 871
XcmI CCANNNNNNNNNTGG 1 cut(s) 386
XmnI GAANNNNTTC 1 cut(s) 79
Zsp2I ATGCAT 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.