Rh2CG631200

PGAP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0020444
Physical Location & Seq
Forward (+)
80369483 .. 80372822
3340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG631200.1

Sequence Viewer

Length: 777 bp
ATGGAAATCCCTTCATTTCGCAGCCATGCACGAAGACATGAATTATTTGATTATAAGAAAGACGGAAATGGTGGGCCTGACAAAATTACATTCAAACGTGATGGTATATCAGACCAGAATTTTTCTTCTGAAGATACGTCGTCCAATAGCCCAGACTCTTCAAAAAGTTTTGGTGAAACTCAATTAGAGATATTCCATCATCGGCATGGGTTGTTTATTCTGCATCTTGTTGCAACACTCATGTTTGGCCCATCATTTGTGACTTGGTTGGAGAGAATTGGGACGGATAGTAGCTTTCCATGGGTCTTGGATTCAGCTCTTTCCACAGGTGTGATCCTTCATGGTATCTTCACTTCAAATCCTCAGTTCAATTCCTTCCTGGTTTCTGTGCCACCAATCCGAAACCGAGAAGTGAGGATGCATTTACTGTACCTGTTTGCTGGACACTATTCCTATCTCTCTTCCCTGGCCTTGGCTCCTTATAGAGAATTTTATGTTATGTCTGCTGTAGGCTATACATCTATTGGTCTGACCCTCTTACAGAGATGGAACAAGGAGAAAGGAGATGCCCATTTTGTTAACCGAAGGCACTCTCACAGGCACCGACTCCCCAGAAATACTCAGATTTTACTCAGTGGCCAAATCTCCAGTAAGGTCCCTTGTGCTAATATAGGTTACGAGAACATGTTAGTCCTTCTGACGGTGTGGGACTTGTTTGCGGACTTGCTTCTATTAACCACAGTTCTGCAATCAGAATTCTCACGGACAAGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PGAP1

Protein Analysis

258

Amino Acids

29.41

Weight (kDa)

8.99

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020444)

Species Orthologous Gene IDs
pyrus_communis pycom111g01470 pycom17g01520
rosa_laevigata RLG00000022258
rosa_multiflora Rmu_sc0043101.1_g000001
rosa_samantha Rh2CG631200 Rh2DG681800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 54
AccB1I GGYRCC 1 cut(s) 600
AciI CCGC 1 cut(s) 719
AclWI GGATC 1 cut(s) 328
AcoI YGGCCR 1 cut(s) 637
AcsI RAATTY 3 cut(s) 118, 488, 755
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 1 cut(s) 431
AfiI CCNNNNNNNGG 2 cut(s) 472, 700
AflIII ACRYGT 1 cut(s) 684
AgsI TTSAA 4 cut(s) 94, 162, 357, 370
AjnI CCWGG 2 cut(s) 378, 465
AleI CACNNNNGTG 1 cut(s) 329
AluBI AGCT 2 cut(s) 294, 317
AluI AGCT 2 cut(s) 294, 317
AlwI GGATC 1 cut(s) 328
AoxI GGCC 4 cut(s) 74, 247, 468, 637
ApeKI GCWGC 1 cut(s) 21
ApoI RAATTY 3 cut(s) 118, 488, 755
AspS9I GGNCC 3 cut(s) 74, 248, 655
AsuHPI GGTGA 1 cut(s) 185
AvaII GGWCC 1 cut(s) 655
BalI TGGCCA 1 cut(s) 639
BanI GGYRCC 1 cut(s) 600
BarI GAAGNNNNNNTAC 2 cut(s) 337, 369
BbsI GAAGAC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 33
BccI CCATC 4 cut(s) 95, 204, 259, 540
BciT130I CCWGG 2 cut(s) 380, 467
BfmI CTRYAG 1 cut(s) 507
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
Bme1390I CCNGG 2 cut(s) 380, 467
Bme18I GGWCC 1 cut(s) 655
BmgT120I GGNCC 3 cut(s) 74, 248, 655
BmiI GGNNCC 3 cut(s) 477, 602, 657
BmrFI CCNGG 2 cut(s) 380, 467
BmsI GCATC 3 cut(s) 232, 408, 556
BpiI GAAGAC 1 cut(s) 40
BpmI CTGGAG 1 cut(s) 631
BsaJI CCNNGG 3 cut(s) 299, 465, 471
Bsc4I CCNNNNNNNGG 2 cut(s) 472, 700
Bse1I ACTGG 1 cut(s) 648
BseBI CCWGG 2 cut(s) 380, 467
BseDI CCNNGG 3 cut(s) 299, 465, 471
BseGI GGATG 1 cut(s) 423
BseLI CCNNNNNNNGG 2 cut(s) 472, 700
BseMII CTCAG 3 cut(s) 377, 635, 646
BseNI ACTGG 1 cut(s) 648
BseXI GCAGC 1 cut(s) 33
BshFI GGCC 4 cut(s) 76, 249, 470, 639
BshNI GGYRCC 1 cut(s) 600
BslFI GGGAC 3 cut(s) 295, 641, 722
BslI CCNNNNNNNGG 2 cut(s) 472, 700
BsmFI GGGAC 3 cut(s) 295, 641, 722
BsnI GGCC 4 cut(s) 76, 249, 470, 639
Bsp143I GATC 1 cut(s) 333
Bsp19I CCATGG 1 cut(s) 299
BspACI CCGC 1 cut(s) 719
BspANI GGCC 4 cut(s) 76, 249, 470, 639
BspCNI CTCAG 3 cut(s) 376, 634, 645
BspLI GGNNCC 3 cut(s) 477, 602, 657
BspPI GGATC 1 cut(s) 328
BspT107I GGYRCC 1 cut(s) 600
BsrI ACTGG 1 cut(s) 648
BssECI CCNNGG 3 cut(s) 299, 465, 471
BssMI GATC 1 cut(s) 333
BssT1I CCWWGG 2 cut(s) 299, 471
Bst2UI CCWGG 2 cut(s) 380, 467
Bst4CI ACNGT 3 cut(s) 429, 703, 742
Bst6I CTCTTC 2 cut(s) 163, 466
BstDEI CTNAG 3 cut(s) 363, 621, 632
BstDSI CCRYGG 1 cut(s) 299
BstF5I GGATG 1 cut(s) 423
BstKTI GATC 1 cut(s) 336
BstMBI GATC 1 cut(s) 333
BstNI CCWGG 2 cut(s) 380, 467
BstNSI RCATGY 1 cut(s) 688
BstSCI CCNGG 2 cut(s) 378, 465
BstSFI CTRYAG 1 cut(s) 507
BstV1I GCAGC 1 cut(s) 33
BstV2I GAAGAC 1 cut(s) 40
BsuRI GGCC 4 cut(s) 76, 249, 470, 639
BtgI CCRYGG 1 cut(s) 299
BtsCI GGATG 1 cut(s) 423
BtsIMutI CAGTG 1 cut(s) 640
Cfr13I GGNCC 3 cut(s) 74, 248, 655
Csp6I GTAC 1 cut(s) 430
CviAII CATG 7 cut(s) 26, 38, 206, 241, 300, 341, 685
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 3 cut(s) 363, 621, 632
DpnI GATC 1 cut(s) 335
DpnII GATC 1 cut(s) 333
EaeI YGGCCR 1 cut(s) 637
Eam1104I CTCTTC 2 cut(s) 163, 466
EarI CTCTTC 2 cut(s) 163, 466
Eco130I CCWWGG 2 cut(s) 299, 471
Eco47I GGWCC 1 cut(s) 655
Eco57I CTGAAG 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 655
EcoRI GAATTC 1 cut(s) 755
EcoRII CCWGG 2 cut(s) 378, 465
EcoT14I CCWWGG 2 cut(s) 299, 471
EcoT22I ATGCAT 1 cut(s) 423
ErhI CCWWGG 2 cut(s) 299, 471
FaeI CATG 7 cut(s) 29, 41, 209, 244, 303, 344, 688
FaqI GGGAC 3 cut(s) 295, 641, 722
FatI CATG 7 cut(s) 25, 37, 205, 240, 299, 340, 684
Fnu4HI GCNGC 1 cut(s) 22
FokI GGATG 1 cut(s) 430
Fsp4HI GCNGC 1 cut(s) 22
GluI GCNGC 1 cut(s) 22
GsuI CTGGAG 1 cut(s) 631
HaeIII GGCC 4 cut(s) 76, 249, 470, 639
Hin1II CATG 7 cut(s) 29, 41, 209, 244, 303, 344, 688
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HinfI GANTC 3 cut(s) 155, 311, 606
HpaI GTTAAC 1 cut(s) 580
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 580
Hpy188I TCNGA 7 cut(s) 112, 130, 401, 531, 624, 699, 754
Hpy8I GTNNAC 1 cut(s) 580
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 5 cut(s) 21, 347, 385, 579, 704
HpyCH4III ACNGT 3 cut(s) 429, 703, 742
HpyCH4IV ACGT 2 cut(s) 97, 137
HpyCH4V TGCA 5 cut(s) 29, 223, 233, 421, 748
HpyF3I CTNAG 3 cut(s) 363, 621, 632
HpySE526I ACGT 2 cut(s) 97, 137
Hsp92II CATG 7 cut(s) 29, 41, 209, 244, 303, 344, 688
KspAI GTTAAC 1 cut(s) 580
Kzo9I GATC 1 cut(s) 333
LmnI GCTCC 1 cut(s) 481
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 3 cut(s) 232, 408, 556
MaeII ACGT 2 cut(s) 97, 137
MaeIII GTNAC 2 cut(s) 259, 674
MalI GATC 1 cut(s) 335
MboI GATC 1 cut(s) 333
MboII GAAGA 6 cut(s) 45, 117, 143, 150, 340, 453
MlsI TGGCCA 1 cut(s) 639
MluCI AATT 8 cut(s) 41, 84, 118, 182, 276, 370, 488, 755
MluNI TGGCCA 1 cut(s) 639
MlyI GAGTC 2 cut(s) 149, 600
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 3 cut(s) 372, 408, 545
Mox20I TGGCCA 1 cut(s) 639
Mph1103I ATGCAT 1 cut(s) 423
MscI TGGCCA 1 cut(s) 639
MseI TTAA 2 cut(s) 579, 734
MslI CAYNNNNRTG 2 cut(s) 204, 329
Msp20I TGGCCA 1 cut(s) 639
MspR9I CCNGG 2 cut(s) 380, 467
MvaI CCWGG 2 cut(s) 380, 467
NcoI CCATGG 1 cut(s) 299
NdeII GATC 1 cut(s) 333
NlaIII CATG 7 cut(s) 29, 41, 209, 244, 303, 344, 688
NlaIV GGNNCC 3 cut(s) 477, 602, 657
NmuCI GTSAC 1 cut(s) 259
NsiI ATGCAT 1 cut(s) 423
NspI RCATGY 1 cut(s) 688
OliI CACNNNNGTG 1 cut(s) 329
PciI ACATGT 1 cut(s) 684
PfeI GAWTC 1 cut(s) 311
PkrI GCNGC 1 cut(s) 23
PleI GAGTC 2 cut(s) 149, 600
PpsI GAGTC 2 cut(s) 149, 600
PpuMI RGGWCCY 1 cut(s) 655
PscI ACATGT 1 cut(s) 684
PsiI TTATAA 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 655
Psp6I CCWGG 2 cut(s) 378, 465
PspGI CCWGG 2 cut(s) 378, 465
PspN4I GGNNCC 3 cut(s) 477, 602, 657
PspPI GGNCC 3 cut(s) 74, 248, 655
PspPPI RGGWCCY 1 cut(s) 655
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
RseI CAYNNNNRTG 2 cut(s) 204, 329
SaqAI TTAA 2 cut(s) 579, 734
SatI GCNGC 1 cut(s) 22
Sau3AI GATC 1 cut(s) 333
Sau96I GGNCC 3 cut(s) 74, 248, 655
SchI GAGTC 2 cut(s) 149, 600
ScrFI CCNGG 2 cut(s) 380, 467
SetI ASST 8 cut(s) 100, 140, 296, 319, 331, 435, 657, 676
SfaNI GCATC 3 cut(s) 232, 408, 556
SfcI CTRYAG 1 cut(s) 507
SinI GGWCC 1 cut(s) 655
SmiMI CAYNNNNRTG 2 cut(s) 204, 329
Sse9I AATT 8 cut(s) 41, 84, 118, 182, 276, 370, 488, 755
SsiI CCGC 1 cut(s) 719
StyD4I CCNGG 2 cut(s) 378, 465
StyI CCWWGG 2 cut(s) 299, 471
TaaI ACNGT 3 cut(s) 429, 703, 742
TaiI ACGT 2 cut(s) 100, 140
TasI AATT 8 cut(s) 41, 84, 118, 182, 276, 370, 488, 755
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 2 cut(s) 579, 734
Tru9I TTAA 2 cut(s) 579, 734
TscAI CASTG 1 cut(s) 640
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 1 cut(s) 21
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 2 cut(s) 54, 329
TspGWI ACGGA 2 cut(s) 78, 299
TspRI CASTG 1 cut(s) 640
VpaK11BI GGWCC 1 cut(s) 655
XapI RAATTY 3 cut(s) 118, 488, 755
XceI RCATGY 1 cut(s) 688
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
Zsp2I ATGCAT 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.