pycom17g02170

Bacterial Ig-like domain 2

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
1361496 .. 1363557
2062 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1155 bp
ATGGATTTTCGGACGAACGATCCCAACCTCGATGGCGAAGCTCAGGACAATAACCAGCCAGACCATAGACACGAGACGGCGGAGGATGACGACTACAGCAGGTCCCAGCCTCAAACTGGCGACGGCGCCAGCCCCGGGAAAATCTTTATAGGGGGTTTGGCAAGAGAGACTACTACAGCGCAATTTATAAAGTATTTTGGTGCGTACGGTGAGATTATAGATTCGGTGATTATGAAGGACCGGAAGACGGGGCAACCCCGTGGTTTCGGGTTTGTGACGTATGCAGACCCCTCTGTGGTTGATAGAGTCATTGAGGAGACTCATGTTATCAATGGCAAGCAAGTCGAAATCAAGCGAACAATACCCCGGGGAGCAATGGGGTCTAAGGATTTCAAGACTAAGAAGATATTTGTGGGTGGAATTCCAACAACCGTAAATGAAGAGGAGTTTAGCGACTTCTTTTCACAGTACGGAGAGGTTAAGGAACATCAGATTATGCGGGACCACTCCACCGGCCGCTCCCGTGGATTTGGATTTGTCACCTTTGATACAGATCAAGCAGTTGATGAACTCTTGGACAAGGGGAACAAGCTTGATTTTGCTGGAGCTCAGGTGGAGATAAAAAAGGCAGAGCCAAAGAAGCCAAACCAACCTGCACCACCATCGAAACGTTATAATGATTCTAGACCTGCATATGGTGGTGGGTATGGAGAAAGCTATGGTGGATATGGAGGTGGCAGTTATGGTGGTGCTGGTGCTTATAGGTCAGCTGCTGCCTATGGTGGTAGAGGGAGTGCTTATGGAGGATATGGTGGCAGTGAATTTGGTGGATATGGAGTATATGGCGGCGGCGGCAGCGGTGGTGGTGGTATAGGGGCTTATAGGGGAGAATCCTCCATGGGATATTCAGGCCGTTATGGAGGAGCCTACAGCAGAGGTTATGATATAGGAGGCGGTTATGGTGGAGCTGGTGAGAGTTATGGGGGATATGGAGGTGCTGGCGGGGCAGCTGGTGGCGGTGGTTACGGGAGTGGCTATGATGCAGCAGGTTTTGGAGGTGGCTACGGAGGTGGTAGTGGAGCTTCCTTTTACGGTAGTAGAGGAGGGGGATATGGTGGTCCAGGTAGTGGTCGATATCATCCATATGGGAGGTAA

Protein Analysis

385

Amino Acids

39.82

Weight (kDa)

5.94

Isoelectric Point (pI)

27.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 48 - 107 7e-13 RNA recognition motif
RRM_7 PF16367 134 - 197 4.3e-08 RNA recognition motif
RRM_1 PF00076 136 - 204 1.6e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 188, 675
Acc36I ACCTGC 4 cut(s) 90, 661, 697, 1037
AccB1I GGYRCC 1 cut(s) 125
AccB7I CCANNNNNTGG 1 cut(s) 1127
AccBSI CCGCTC 1 cut(s) 519
AclI AACGTT 1 cut(s) 670
AclWI GGATC 1 cut(s) 14
AcoI YGGCCR 1 cut(s) 514
AcsI RAATTY 2 cut(s) 420, 821
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 2 cut(s) 206, 470
AfiI CCNNNNNNNGG 6 cut(s) 116, 135, 247, 295, 695, 1127
AgsI TTSAA 1 cut(s) 394
AjnI CCWGG 1 cut(s) 1120
AluBI AGCT 8 cut(s) 41, 592, 608, 717, 770, 968, 1010, 1082
AluI AGCT 8 cut(s) 41, 592, 608, 717, 770, 968, 1010, 1082
Alw21I GWGCWC 1 cut(s) 610
Alw26I GTCTC 3 cut(s) 68, 161, 311
AlwI GGATC 1 cut(s) 14
AlwNI CAGNNNCTG 1 cut(s) 773
Ama87I CYCGRG 2 cut(s) 134, 366
AoxI GGCC 2 cut(s) 514, 910
ApeKI GCWGC 5 cut(s) 770, 773, 855, 1007, 1043
ApoI RAATTY 2 cut(s) 420, 821
AspLEI GCGC 2 cut(s) 128, 181
AspS9I GGNCC 4 cut(s) 102, 238, 502, 1118
AsuC2I CCSGG 4 cut(s) 135, 136, 367, 368
AsuHPI GGTGA 4 cut(s) 221, 238, 532, 983
AvaI CYCGRG 2 cut(s) 134, 366
AvaII GGWCC 4 cut(s) 102, 238, 502, 1118
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 610
BarI GAAGNNNNNNTAC 2 cut(s) 1066, 1098
BauI CACGAG 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 610
BbvI GCAGC 5 cut(s) 757, 760, 867, 1019, 1055
BccI CCATC 2 cut(s) 26, 670
BceAI ACGGC 3 cut(s) 93, 139, 897
BcgI CGANNNNNNTGC 4 cut(s) 325, 359, 645, 679
BciT130I CCWGG 1 cut(s) 1122
BcnI CCSGG 4 cut(s) 135, 136, 367, 368
BcoDI GTCTC 3 cut(s) 68, 161, 311
BfaI CTAG 1 cut(s) 684
BfmI CTRYAG 3 cut(s) 94, 174, 928
BfoI RGCGCY 1 cut(s) 129
BfuAI ACCTGC 4 cut(s) 90, 661, 697, 1037
BisI GCNGC 9 cut(s) 517, 771, 774, 847, 850, 853, 856, 1008, 1044
BlsI GCNGC 9 cut(s) 518, 772, 775, 848, 851, 854, 857, 1009, 1045
Bme1390I CCNGG 5 cut(s) 135, 136, 367, 368, 1122
Bme18I GGWCC 4 cut(s) 102, 238, 502, 1118
BmeT110I CYCGRG 2 cut(s) 134, 366
BmgT120I GGNCC 4 cut(s) 102, 238, 502, 1118
BmiI GGNNCC 4 cut(s) 104, 127, 503, 925
BmrFI CCNGG 5 cut(s) 135, 136, 367, 368, 1122
BmsI GCATC 1 cut(s) 1030
BpiI GAAGAC 1 cut(s) 251
BpmI CTGGAG 1 cut(s) 624
Bpu10I CCTNAGC 2 cut(s) 42, 609
BpuMI CCSGG 4 cut(s) 135, 136, 367, 368
BsaBI GATNNNNATC 1 cut(s) 552
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 8 cut(s) 133, 134, 259, 365, 366, 367, 523, 897
BsaWI WCCGGW 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bsc4I CCNNNNNNNGG 6 cut(s) 116, 135, 247, 295, 695, 1127
Bse118I RCCGGY 1 cut(s) 512
Bse1I ACTGG 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 381
Bse8I GATNNNNATC 1 cut(s) 552
BseBI CCWGG 1 cut(s) 1122
BseDI CCNNGG 8 cut(s) 133, 134, 259, 365, 366, 367, 523, 897
BseGI GGATG 2 cut(s) 91, 1138
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 6 cut(s) 116, 135, 247, 295, 695, 1127
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 2 cut(s) 56, 623
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 4 cut(s) 329, 458, 936, 1116
BseX3I CGGCCG 1 cut(s) 514
BseXI GCAGC 5 cut(s) 757, 760, 867, 1019, 1055
BseYI CCCAGC 1 cut(s) 105
BsgI GTGCAG 1 cut(s) 639
Bsh1285I CGRYCG 1 cut(s) 517
BshFI GGCC 2 cut(s) 516, 912
BshNI GGYRCC 1 cut(s) 125
BsiEI CGRYCG 1 cut(s) 517
BsiHKAI GWGCWC 1 cut(s) 610
BsiHKCI CYCGRG 2 cut(s) 134, 366
BsiSI CCGG 4 cut(s) 135, 241, 367, 513
BsiWI CGTACG 1 cut(s) 204
BslFI GGGAC 2 cut(s) 88, 515
BslI CCNNNNNNNGG 6 cut(s) 116, 135, 247, 295, 695, 1127
BsmAI GTCTC 3 cut(s) 68, 161, 311
BsmBI CGTCTC 1 cut(s) 68
BsmFI GGGAC 2 cut(s) 88, 515
BsnI GGCC 2 cut(s) 516, 912
BsoBI CYCGRG 2 cut(s) 134, 366
Bsp1286I GDGCHC 1 cut(s) 610
Bsp143I GATC 2 cut(s) 19, 553
Bsp19I CCATGG 1 cut(s) 897
BspANI GGCC 2 cut(s) 516, 912
BspCNI CTCAG 2 cut(s) 55, 622
BspLI GGNNCC 4 cut(s) 104, 127, 503, 925
BspMI ACCTGC 4 cut(s) 90, 661, 697, 1037
BspPI GGATC 1 cut(s) 14
BspT107I GGYRCC 1 cut(s) 125
BsrBI CCGCTC 1 cut(s) 519
BsrDI GCAATG 1 cut(s) 381
BsrFI RCCGGY 1 cut(s) 512
BsrI ACTGG 1 cut(s) 121
BssAI RCCGGY 1 cut(s) 512
BssECI CCNNGG 8 cut(s) 133, 134, 259, 365, 366, 367, 523, 897
BssMI GATC 2 cut(s) 19, 553
BssNI GRCGYC 1 cut(s) 126
BssSI CACGAG 1 cut(s) 71
BssT1I CCWWGG 1 cut(s) 897
Bst2BI CACGAG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 1122
Bst4CI ACNGT 4 cut(s) 209, 433, 468, 1094
Bst6I CTCTTC 1 cut(s) 435
BstACI GRCGYC 1 cut(s) 126
BstC8I GCNNGC 3 cut(s) 130, 338, 1000
BstDEI CTNAG 4 cut(s) 42, 384, 399, 609
BstDSI CCRYGG 3 cut(s) 259, 523, 897
BstF5I GGATG 2 cut(s) 91, 1138
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 2 cut(s) 128, 181
BstKTI GATC 2 cut(s) 22, 556
BstMAI GTCTC 3 cut(s) 68, 161, 311
BstMBI GATC 2 cut(s) 19, 553
BstMCI CGRYCG 1 cut(s) 517
BstMWI GCNNNNNNNGC 4 cut(s) 640, 852, 855, 1004
BstNI CCWGG 1 cut(s) 1122
BstSCI CCNGG 5 cut(s) 133, 134, 365, 366, 1120
BstSFI CTRYAG 3 cut(s) 94, 174, 928
BstV1I GCAGC 5 cut(s) 757, 760, 867, 1019, 1055
BstV2I GAAGAC 1 cut(s) 251
BstZI CGGCCG 1 cut(s) 514
BsuRI GGCC 2 cut(s) 516, 912
BtgI CCRYGG 3 cut(s) 259, 523, 897
BtsCI GGATG 2 cut(s) 91, 1138
BtsI GCAGTG 1 cut(s) 823
BtsIMutI CAGTG 1 cut(s) 823
BveI ACCTGC 4 cut(s) 90, 661, 697, 1037
Cac8I GCNNGC 3 cut(s) 130, 338, 1000
CaiI CAGNNNCTG 1 cut(s) 773
CfoI GCGC 2 cut(s) 128, 181
Cfr10I RCCGGY 1 cut(s) 512
Cfr13I GGNCC 4 cut(s) 102, 238, 502, 1118
Cfr9I CCCGGG 2 cut(s) 134, 366
Csp6I GTAC 2 cut(s) 205, 469
CviAII CATG 2 cut(s) 323, 898
CviQI GTAC 2 cut(s) 205, 469
DdeI CTNAG 4 cut(s) 42, 384, 399, 609
DinI GGCGCC 1 cut(s) 127
DpnI GATC 2 cut(s) 21, 555
DpnII GATC 2 cut(s) 19, 553
EaeI YGGCCR 1 cut(s) 514
EagI CGGCCG 1 cut(s) 514
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
EciI GGCGGA 1 cut(s) 95
Ecl136II GAGCTC 1 cut(s) 608
EclXI CGGCCG 1 cut(s) 514
Eco130I CCWWGG 1 cut(s) 897
Eco24I GRGCYC 1 cut(s) 610
Eco32I GATATC 1 cut(s) 1136
Eco47I GGWCC 4 cut(s) 102, 238, 502, 1118
Eco52I CGGCCG 1 cut(s) 514
Eco53kI GAGCTC 1 cut(s) 608
Eco88I CYCGRG 2 cut(s) 134, 366
EcoICRI GAGCTC 1 cut(s) 608
EcoO109I RGGNCCY 1 cut(s) 102
EcoRI GAATTC 1 cut(s) 420
EcoRII CCWGG 1 cut(s) 1120
EcoRV GATATC 1 cut(s) 1136
EcoT14I CCWWGG 1 cut(s) 897
EcoT38I GRGCYC 1 cut(s) 610
EgeI GGCGCC 1 cut(s) 127
EheI GGCGCC 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 897
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 2 cut(s) 326, 901
FaqI GGGAC 2 cut(s) 88, 515
FatI CATG 2 cut(s) 322, 897
FauI CCCGC 2 cut(s) 492, 995
FauNDI CATATG 2 cut(s) 694, 1144
Fnu4HI GCNGC 9 cut(s) 517, 771, 774, 847, 850, 853, 856, 1008, 1044
FokI GGATG 2 cut(s) 98, 1125
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 9 cut(s) 517, 771, 774, 847, 850, 853, 856, 1008, 1044
FspBI CTAG 1 cut(s) 684
GlaI GCGC 2 cut(s) 127, 180
GluI GCNGC 9 cut(s) 517, 771, 774, 847, 850, 853, 856, 1008, 1044
GsaI CCCAGC 1 cut(s) 109
GsuI CTGGAG 1 cut(s) 624
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 2 cut(s) 516, 912
HapII CCGG 4 cut(s) 135, 241, 367, 513
HhaI GCGC 2 cut(s) 128, 181
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 2 cut(s) 326, 901
Hin6I GCGC 2 cut(s) 126, 179
HinP1I GCGC 2 cut(s) 126, 179
HindIII AAGCTT 1 cut(s) 590
HinfI GANTC 5 cut(s) 221, 306, 319, 680, 890
HpaII CCGG 4 cut(s) 135, 241, 367, 513
HphI GGTGA 4 cut(s) 221, 238, 532, 983
Hpy188I TCNGA 2 cut(s) 12, 492
Hpy188III TCNNGA 3 cut(s) 44, 394, 684
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 4 cut(s) 209, 433, 468, 1094
HpyCH4IV ACGT 2 cut(s) 278, 670
HpyCH4V TGCA 4 cut(s) 284, 656, 692, 1043
HpyF10VI GCNNNNNNNGC 4 cut(s) 640, 852, 855, 1004
HpyF3I CTNAG 4 cut(s) 42, 384, 399, 609
HpySE526I ACGT 2 cut(s) 278, 670
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 2 cut(s) 326, 901
HspAI GCGC 2 cut(s) 126, 179
KasI GGCGCC 1 cut(s) 125
Kzo9I GATC 2 cut(s) 19, 553
LmnI GCTCC 6 cut(s) 371, 524, 605, 923, 965, 1079
Lsp1109I GCAGC 5 cut(s) 757, 760, 867, 1019, 1055
LweI GCATC 1 cut(s) 1030
MaeI CTAG 1 cut(s) 684
MaeII ACGT 2 cut(s) 278, 670
MaeIII GTNAC 3 cut(s) 274, 538, 1022
MalI GATC 2 cut(s) 21, 555
MbiI CCGCTC 1 cut(s) 519
MboI GATC 2 cut(s) 19, 553
MboII GAAGA 3 cut(s) 256, 415, 452
MhlI GDGCHC 1 cut(s) 610
MluCI AATT 3 cut(s) 182, 420, 821
Mly113I GGCGCC 1 cut(s) 126
MlyI GAGTC 2 cut(s) 313, 315
MmeI TCCRAC 1 cut(s) 449
MseI TTAA 1 cut(s) 480
MslI CAYNNNNRTG 1 cut(s) 1143
MspA1I CMGCKG 3 cut(s) 770, 858, 1010
MspI CCGG 4 cut(s) 135, 241, 367, 513
MspR9I CCNGG 5 cut(s) 135, 136, 367, 368, 1122
MvaI CCWGG 1 cut(s) 1122
MwoI GCNNNNNNNGC 4 cut(s) 640, 852, 855, 1004
NarI GGCGCC 1 cut(s) 126
NciI CCSGG 4 cut(s) 135, 136, 367, 368
NcoI CCATGG 1 cut(s) 897
NdeI CATATG 2 cut(s) 694, 1144
NdeII GATC 2 cut(s) 19, 553
NlaIII CATG 2 cut(s) 326, 901
NlaIV GGNNCC 4 cut(s) 104, 127, 503, 925
NmuCI GTSAC 2 cut(s) 274, 538
PfeI GAWTC 3 cut(s) 221, 680, 890
Pfl23II CGTACG 1 cut(s) 204
PflMI CCANNNNNTGG 1 cut(s) 1127
PkrI GCNGC 9 cut(s) 518, 772, 775, 848, 851, 854, 857, 1009, 1045
PleI GAGTC 2 cut(s) 313, 314
PluTI GGCGCC 1 cut(s) 129
PpsI GAGTC 2 cut(s) 313, 314
PpuMI RGGWCCY 1 cut(s) 102
PsiI TTATAA 2 cut(s) 188, 675
Psp124BI GAGCTC 1 cut(s) 610
Psp1406I AACGTT 1 cut(s) 670
Psp5II RGGWCCY 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 1120
PspFI CCCAGC 1 cut(s) 105
PspGI CCWGG 1 cut(s) 1120
PspLI CGTACG 1 cut(s) 204
PspN4I GGNNCC 4 cut(s) 104, 127, 503, 925
PspPI GGNCC 4 cut(s) 102, 238, 502, 1118
PspPPI RGGWCCY 1 cut(s) 102
PstNI CAGNNNCTG 1 cut(s) 773
PvuII CAGCTG 2 cut(s) 770, 1010
RsaI GTAC 2 cut(s) 206, 470
RsaNI GTAC 2 cut(s) 205, 469
RseI CAYNNNNRTG 1 cut(s) 1143
SacI GAGCTC 1 cut(s) 610
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 9 cut(s) 517, 771, 774, 847, 850, 853, 856, 1008, 1044
Sau3AI GATC 2 cut(s) 19, 553
Sau96I GGNCC 4 cut(s) 102, 238, 502, 1118
SchI GAGTC 2 cut(s) 313, 315
ScrFI CCNGG 5 cut(s) 135, 136, 367, 368, 1122
SduI GDGCHC 1 cut(s) 610
SfaNI GCATC 1 cut(s) 1030
SfcI CTRYAG 3 cut(s) 94, 174, 928
SfoI GGCGCC 1 cut(s) 127
SinI GGWCC 4 cut(s) 102, 238, 502, 1118
SmaI CCCGGG 2 cut(s) 136, 368
SmiMI CAYNNNNRTG 1 cut(s) 1143
Sse9I AATT 3 cut(s) 182, 420, 821
SspDI GGCGCC 1 cut(s) 125
SspMI CTAG 1 cut(s) 684
SstI GAGCTC 1 cut(s) 610
StyD4I CCNGG 5 cut(s) 133, 134, 365, 366, 1120
StyI CCWWGG 1 cut(s) 897
TaaI ACNGT 4 cut(s) 209, 433, 468, 1094
TaiI ACGT 2 cut(s) 281, 673
TaqI TCGA 4 cut(s) 30, 345, 665, 1132
TasI AATT 3 cut(s) 182, 420, 821
TauI GCSGC 4 cut(s) 519, 849, 852, 855
TfiI GAWTC 3 cut(s) 221, 680, 890
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 1 cut(s) 823
TseFI GTSAC 2 cut(s) 274, 538
TseI GCWGC 5 cut(s) 770, 773, 855, 1007, 1043
Tsp45I GTSAC 2 cut(s) 274, 538
TspDTI ATGAA 3 cut(s) 248, 453, 582
TspGWI ACGGA 2 cut(s) 486, 1080
TspMI CCCGGG 2 cut(s) 134, 366
TspRI CASTG 1 cut(s) 823
Van91I CCANNNNNTGG 1 cut(s) 1127
VpaK11BI GGWCC 4 cut(s) 102, 238, 502, 1118
XapI RAATTY 2 cut(s) 420, 821
XbaI TCTAGA 1 cut(s) 683
XcmI CCANNNNNNNNNTGG 1 cut(s) 113
XmaI CCCGGG 2 cut(s) 134, 366
XspI CTAG 1 cut(s) 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.