pycom17g03070

Proteasome assembly chaperone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0015318
Physical Location & Seq
Forward (+)
2018316 .. 2020142
1827 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGAACAGATATCTCATTCTTAATCTTGTACAAGTAAAAGGAAAATTTTACAGCAGTCTAATCGCGTCTGCTGTAAGTCGTAATCGTATTGAAGAAGAAGAAGAAGAAGAAGAAGCAGCAGCAGCAGCAGCTATGGGCAGCTTCCCCGTTGCCCACAAGAAATTTTCCTTGGAAATTAAGGGGAACAAGACGGATGTAGTGATGTGCAGTTATGATGATCATTTTCTTGTCATTGCAACTCAAATTGGAGCTATGGGCACCATACTGCAAGCCAGGAAGGAGGAAGGGATGGCAATCCATCCGACATTCAACGTGTCTGTAATCTTCGGCAAGCGAGACGAGCCAATGCTAGTGTCATGTGCTCGTCAACTTATTGAACACATCAGTAGCTCAGGCTCCTCGAAGCCGTTAATGCTTTCTCTTGGTCTCAAAGATCATTCAGCGGAGACACTGAAAAGCATTGTTTCAGCTGTTATCGAGAATCGCTTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC3

Protein Analysis

165

Amino Acids

18.1

Weight (kDa)

6.21

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAC3 PF10178 77 - 161 1.2e-31 Proteasome assembly chaperone 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14710
fragaria_vesca FvH4_6g50830
malus_domestica MD17G1033600.v1.1
prunus_persica Prupe.3G286100_v2.0.a1
pyrus_communis pycom17g03070
rosa_chinensis RchiOBHm_Chr2g0172221
rosa_laevigata RLG00000022094
rosa_multiflora Rmu_sc0024549.1_g000003 Rmu_sc0025855.1_g000005
rosa_roxburghii Rroxscaffold_2G00080070
rosa_rugosa Rorug02G0557600
rosa_samantha Rh2AG632800 Rh2BG646400 Rh2CG613100 Rh2DG661000
rosa_wichuraiana Rw2G052390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 257
AccII CGCG 1 cut(s) 65
AciI CCGC 1 cut(s) 443
AcsI RAATTY 2 cut(s) 44, 161
AfaI GTAC 1 cut(s) 30
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 3 cut(s) 92, 310, 377
AjnI CCWGG 1 cut(s) 272
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 5 cut(s) 131, 141, 251, 390, 470
AluI AGCT 5 cut(s) 131, 141, 251, 390, 470
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 3 cut(s) 330, 431, 440
ApeKI GCWGC 6 cut(s) 116, 119, 122, 125, 128, 138
ApoI RAATTY 2 cut(s) 44, 161
Asp700I GAANNNNTTC 1 cut(s) 485
BaeGI GKGCMC 1 cut(s) 260
BanI GGYRCC 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 6 cut(s) 128, 131, 134, 137, 140, 150
BccI CCATC 2 cut(s) 283, 306
BceAI ACGGC 1 cut(s) 391
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BciT130I CCWGG 1 cut(s) 274
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 3 cut(s) 330, 431, 440
BfaI CTAG 1 cut(s) 350
BisI GCNGC 6 cut(s) 117, 120, 123, 126, 129, 139
BlsI GCNGC 6 cut(s) 118, 121, 124, 127, 130, 140
Bme1390I CCNGG 1 cut(s) 274
BmiI GGNNCC 2 cut(s) 259, 397
BmrFI CCNGG 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 391
BsaBI GATNNNNATC 1 cut(s) 293
BsaI GGTCTC 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 168
Bse3DI GCAATG 1 cut(s) 231
Bse8I GATNNNNATC 1 cut(s) 293
BseBI CCWGG 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 3 cut(s) 199, 294, 298
BseJI GATNNNNATC 1 cut(s) 293
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 405
BseRI GAGGAG 1 cut(s) 388
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 6 cut(s) 128, 131, 134, 137, 140, 150
BsgI GTGCAG 1 cut(s) 226
Bsh1236I CGCG 1 cut(s) 65
BshNI GGYRCC 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 364
BsmAI GTCTC 3 cut(s) 330, 431, 440
BsmBI CGTCTC 1 cut(s) 330
Bso31I GGTCTC 1 cut(s) 431
Bsp1286I GDGCHC 2 cut(s) 260, 364
Bsp1407I TGTACA 1 cut(s) 28
Bsp143I GATC 2 cut(s) 217, 433
BspACI CCGC 1 cut(s) 443
BspCNI CTCAG 1 cut(s) 404
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 2 cut(s) 259, 397
BspT107I GGYRCC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 231
BsrGI TGTACA 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 2 cut(s) 217, 433
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 274
BstAUI TGTACA 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 270, 332
BstDEI CTNAG 1 cut(s) 391
BstF5I GGATG 3 cut(s) 199, 294, 298
BstFNI CGCG 1 cut(s) 65
BstKTI GATC 2 cut(s) 220, 436
BstMAI GTCTC 3 cut(s) 330, 431, 440
BstMBI GATC 2 cut(s) 217, 433
BstMWI GCNNNNNNNGC 5 cut(s) 122, 125, 128, 340, 412
BstNI CCWGG 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 272
BstSLI GKGCMC 1 cut(s) 260
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 6 cut(s) 128, 131, 134, 137, 140, 150
BtsCI GGATG 3 cut(s) 199, 294, 298
BtsIMutI CAGTG 1 cut(s) 449
Cac8I GCNNGC 2 cut(s) 270, 332
CseI GACGC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 29
CviAII CATG 1 cut(s) 357
CviJI RGCY 9 cut(s) 131, 141, 251, 272, 343, 390, 396, 406, 470
CviKI_1 RGCY 9 cut(s) 131, 141, 251, 272, 343, 390, 396, 406, 470
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 1 cut(s) 391
DpnI GATC 2 cut(s) 219, 435
DpnII GATC 2 cut(s) 217, 433
Eco130I CCWWGG 1 cut(s) 168
Eco31I GGTCTC 1 cut(s) 431
Eco32I GATATC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 272
EcoRV GATATC 1 cut(s) 11
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
Esp3I CGTCTC 1 cut(s) 330
FaeI CATG 1 cut(s) 360
FaiI YATR 5 cut(s) 134, 213, 254, 263, 358
FatI CATG 1 cut(s) 356
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 6 cut(s) 117, 120, 123, 126, 129, 139
FokI GGATG 3 cut(s) 206, 285, 301
Fsp4HI GCNGC 6 cut(s) 117, 120, 123, 126, 129, 139
FspBI CTAG 1 cut(s) 350
GluI GCNGC 6 cut(s) 117, 120, 123, 126, 129, 139
HgaI GACGC 1 cut(s) 54
Hin1II CATG 1 cut(s) 360
HincII GTYRAC 1 cut(s) 368
HindII GTYRAC 1 cut(s) 368
HinfI GANTC 1 cut(s) 481
Hpy166II GTNNAC 1 cut(s) 368
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 1 cut(s) 478
Hpy8I GTNNAC 1 cut(s) 368
HpyAV CCTTC 2 cut(s) 271, 278
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 3 cut(s) 207, 236, 268
HpyF10VI GCNNNNNNNGC 5 cut(s) 122, 125, 128, 340, 412
HpyF3I CTNAG 1 cut(s) 391
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 1 cut(s) 360
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 2 cut(s) 217, 433
LmnI GCTCC 2 cut(s) 248, 401
LpnPI CCDG 4 cut(s) 259, 286, 378, 475
Lsp1109I GCAGC 6 cut(s) 128, 131, 134, 137, 140, 150
MaeI CTAG 1 cut(s) 350
MaeII ACGT 1 cut(s) 312
MalI GATC 2 cut(s) 219, 435
MboI GATC 2 cut(s) 217, 433
MboII GAAGA 8 cut(s) 104, 107, 110, 113, 116, 119, 122, 316
MhlI GDGCHC 2 cut(s) 260, 364
MluCI AATT 4 cut(s) 44, 161, 174, 243
MmeI TCCRAC 1 cut(s) 326
MnlI CCTC 2 cut(s) 274, 409
MroXI GAANNNNTTC 1 cut(s) 485
MseI TTAA 3 cut(s) 21, 177, 410
MspA1I CMGCKG 2 cut(s) 443, 470
MspR9I CCNGG 1 cut(s) 274
MvaI CCWGG 1 cut(s) 274
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 5 cut(s) 122, 125, 128, 340, 412
NdeII GATC 2 cut(s) 217, 433
NlaIII CATG 1 cut(s) 360
NlaIV GGNNCC 2 cut(s) 259, 397
PdmI GAANNNNTTC 1 cut(s) 485
PfeI GAWTC 1 cut(s) 481
PkrI GCNGC 6 cut(s) 118, 121, 124, 127, 130, 140
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PspN4I GGNNCC 2 cut(s) 259, 397
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
SaqAI TTAA 3 cut(s) 21, 177, 410
SatI GCNGC 6 cut(s) 117, 120, 123, 126, 129, 139
Sau3AI GATC 2 cut(s) 217, 433
ScrFI CCNGG 1 cut(s) 274
SduI GDGCHC 2 cut(s) 260, 364
SetI ASST 6 cut(s) 133, 143, 253, 315, 392, 472
Sse9I AATT 4 cut(s) 44, 161, 174, 243
SsiI CCGC 1 cut(s) 443
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 272
StyI CCWWGG 1 cut(s) 168
TaiI ACGT 1 cut(s) 315
TaqI TCGA 2 cut(s) 401, 477
TasI AATT 4 cut(s) 44, 161, 174, 243
TatI WGTACW 1 cut(s) 28
TfiI GAWTC 1 cut(s) 481
Tru1I TTAA 3 cut(s) 21, 177, 410
Tru9I TTAA 3 cut(s) 21, 177, 410
TscAI CASTG 1 cut(s) 456
TseI GCWGC 6 cut(s) 116, 119, 122, 125, 128, 138
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 1 cut(s) 456
XapI RAATTY 2 cut(s) 44, 161
XmnI GAANNNNTTC 1 cut(s) 485
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.