Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0011496

Physical Location & Seq

Genomic Coordinates Reverse (-)

2245682 .. 2246866

Gene Structure 1185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGATATCTCGAATGGCAGAGGGGAAAGATCTTAGATGGTTTTCAGGGCACACCCATTTGAAGATGTCTCGGGTTGAGCATCAAATCCAGATTAAAGATGGTTATTTGAGCTACCCCCCTCCTTTTTCTCTTCACTCTTCACCCCCATATGCTGGAACTTTTCGTAGTGAATCGAACTCGAATCCATCGCCACCATCATCATCCGGCACAAAAATAAGTCCTGCTGTTCTTTTTATAATAGTGATTCTGGCTGTGCTGTTTTTCATCTCCGGTTTGCTTCACCTGCTCGTTCGATTTCTTACCAAGCACCCGTCTTCCTCAGCGGATTCTCAGTCCAATAGGTACCCAGAAATGTCTACTGCTGATGCTCTTCAGAGACAGCTGCAGCAACTCTTCCACCTTCATGATTCTGGTCTAGATCAAGCTTTTATCGACGCTCTTCCTGTTTTCCAGTATCGGGACATTGTGGGTTTGAAGGAGCCGTTTGATTGTTCCGTTTGCCTTTGTGAGTTTACTGAGAAGGACAAGCTCCGATTGCTCCCTACGTGTAGCCATGCTTTCCATATCAACTGTATAGATACTTGGCTGCTGTCAAATTCAACATGTCCTCTTTGTAGGAGTACCCTCTTTAATCCCGAGTATTCAGTTGAAAACCCAATGTTTGATTTTGATGACTATACAGAAGAAGAAGGGTATCCTGGTAATGGAGAAAACAGGTTCGCTTCAAGGCAAAAAACCGTGGACATTGAGGAAATTGTTGTCGATAATGGGATTTTGCCGGTGAGACTGGGAAAATTTAGAAAGGTAGATGCTGAGGTAGGGGAGACAGGAGGAGGAGAGAGTAGTAGCAGTAGATTGGATGCAAGAAGATGTTTTTCAATGGGTTCGTATCAGTATGTGCTTAACGATTCCGACCTTCTGGTTCCCTTATCAAATGATCAACAAGGCCACAATGTAAAGCCAACAAGAGGGATAGAAAACAATGGTAATCTTTCAATTGATAGTGACATGGAGGGAAAGAAGATCAGCAGTGTGACTAAGGGTGAAAGCTATTCTGAGACGTTTTCAAAGATCTGGCTCTGGTCGAAGAAGGGCAAGTTTTCAAGCTCGATAGATACACAGATGGGTATGCCTTCCTCTCTTAATACAGACTTGCCATGGATGAAAAGAACGCAACCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

395

Amino Acids

44.21

Weight (kDa)

5.7

Isoelectric Point (pI)

54.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	162 - 206	2.2e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	163 - 206	1.3e-13	Ring finger domain
zf-RING_11	PF17123	163 - 192	3.8e-10	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40250
fragaria_vesca	FvH4_6g50460
malus_domestica	MD09G1036200.v1.1 MD17G1037800.v1.1
prunus_persica	Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1
pyrus_communis	pycom17g03400
rosa_chinensis	RchiOBHm_Chr2g0170871
rosa_laevigata	RLG00000021988
rosa_multiflora	Rmu_sc0009938.1_g000005
rosa_roxburghii	Rroxscaffold_2G00081000
rosa_rugosa	Rorug02G0551900
rosa_samantha	Rh2AG624700 Rh2BG635300 Rh2CG604100 Rh2DG646900
rosa_wichuraiana	Rw2G051750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
AarI	CACCTGC	1 cut(s)	291
Acc36I	ACCTGC	1 cut(s)	291
Acc65I	GGTACC	1 cut(s)	342
AccB1I	GGYRCC	1 cut(s)	342
AccB7I	CCANNNNNTGG	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	356
AciI	CCGC	1 cut(s)	323
AcsI	RAATTY	2 cut(s)	595, 794
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	2 cut(s)	344, 622
AfiI	CCNNNNNNNGG	4 cut(s)	152, 457, 704, 968
AflIII	ACRYGT	2 cut(s)	545, 602
AgsI	TTSAA	9 cut(s)	61, 475, 600, 650, 726, 879, 996, 1068, 1104
AjnI	CCWGG	1 cut(s)	697
AluBI	AGCT	6 cut(s)	111, 382, 425, 529, 1050, 1107
AluI	AGCT	6 cut(s)	111, 382, 425, 529, 1050, 1107
Alw26I	GTCTC	5 cut(s)	72, 370, 778, 818, 1052
Ama87I	CYCGRG	2 cut(s)	69, 635
AoxI	GGCC	1 cut(s)	946
ApeKI	GCWGC	3 cut(s)	382, 385, 586
ApoI	RAATTY	2 cut(s)	595, 794
Asp718I	GGTACC	1 cut(s)	342
AsuHPI	GGTGA	4 cut(s)	132, 272, 793, 1055
AvaI	CYCGRG	2 cut(s)	69, 635
BaeGI	GKGCMC	1 cut(s)	51
BanI	GGYRCC	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	306
BbvCI	CCTCAGC	2 cut(s)	319, 813
BbvI	GCAGC	3 cut(s)	369, 397, 573
BccI	CCATC	5 cut(s)	30, 92, 193, 202, 1117
BceAI	ACGGC	1 cut(s)	466
BciT130I	CCWGG	1 cut(s)	699
BciVI	GTATCC	1 cut(s)	705
BclI	TGATCA	1 cut(s)	937
BcoDI	GTCTC	5 cut(s)	72, 370, 778, 818, 1052
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	1 cut(s)	383
BfuAI	ACCTGC	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	705
BglII	AGATCT	2 cut(s)	28, 1071
BisI	GCNGC	3 cut(s)	383, 386, 587
BlsI	GCNGC	3 cut(s)	384, 387, 588
Bme1390I	CCNGG	1 cut(s)	699
BmeT110I	CYCGRG	2 cut(s)	69, 635
BmiI	GGNNCC	3 cut(s)	344, 480, 924
BmrFI	CCNGG	1 cut(s)	699
BmrI	ACTGGG	1 cut(s)	797
BmsI	GCATC	4 cut(s)	88, 355, 799, 850
BmuI	ACTGGG	1 cut(s)	797
BpiI	GAAGAC	1 cut(s)	306
Bpu10I	CCTNAGC	2 cut(s)	319, 813
BsaAI	YACGTR	1 cut(s)	546
BsaJI	CCNNGG	2 cut(s)	738, 1157
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	4 cut(s)	152, 457, 704, 968
Bse118I	RCCGGY	1 cut(s)	778
Bse1I	ACTGG	2 cut(s)	451, 792
BseBI	CCWGG	1 cut(s)	699
BseDI	CCNNGG	2 cut(s)	738, 1157
BseGI	GGATG	3 cut(s)	200, 865, 1167
BseLI	CCNNNNNNNGG	4 cut(s)	152, 457, 704, 968
BseMII	CTCAG	5 cut(s)	333, 344, 507, 804, 1047
BseNI	ACTGG	2 cut(s)	451, 792
BseRI	GAGGAG	2 cut(s)	846, 849
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	3 cut(s)	369, 397, 573
BshFI	GGCC	1 cut(s)	948
BshNI	GGYRCC	1 cut(s)	342
BsiHKCI	CYCGRG	2 cut(s)	69, 635
BsiSI	CCGG	3 cut(s)	204, 270, 779
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	4 cut(s)	152, 457, 704, 968
BsmAI	GTCTC	5 cut(s)	72, 370, 778, 818, 1052
BsmBI	CGTCTC	1 cut(s)	1052
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	1 cut(s)	948
BsoBI	CYCGRG	2 cut(s)	69, 635
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	5 cut(s)	28, 418, 937, 1023, 1071
Bsp19I	CCATGG	1 cut(s)	1157
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	948
BspCNI	CTCAG	5 cut(s)	332, 343, 508, 805, 1048
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	3 cut(s)	344, 480, 924
BspMAI	CTGCAG	1 cut(s)	387
BspMI	ACCTGC	1 cut(s)	291
BspQI	GCTCTTC	2 cut(s)	375, 444
BspT107I	GGYRCC	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	778
BsrI	ACTGG	2 cut(s)	451, 792
BssAI	RCCGGY	1 cut(s)	778
BssECI	CCNNGG	2 cut(s)	738, 1157
BssMI	GATC	5 cut(s)	28, 418, 937, 1023, 1071
BssT1I	CCWWGG	1 cut(s)	1157
Bst2UI	CCWGG	1 cut(s)	699
Bst4CI	ACNGT	2 cut(s)	572, 739
Bst6I	CTCTTC	5 cut(s)	135, 142, 375, 398, 444
BstBAI	YACGTR	1 cut(s)	546
BstDEI	CTNAG	7 cut(s)	32, 319, 330, 516, 813, 1038, 1056
BstDSI	CCRYGG	2 cut(s)	738, 1157
BstF5I	GGATG	3 cut(s)	200, 865, 1167
BstKTI	GATC	5 cut(s)	31, 421, 940, 1026, 1074
BstMAI	GTCTC	5 cut(s)	72, 370, 778, 818, 1052
BstMBI	GATC	5 cut(s)	28, 418, 937, 1023, 1071
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 535
BstNI	CCWGG	1 cut(s)	699
BstNSI	RCATGY	1 cut(s)	606
BstSCI	CCNGG	1 cut(s)	697
BstSFI	CTRYAG	1 cut(s)	383
BstSLI	GKGCMC	1 cut(s)	51
BstV1I	GCAGC	3 cut(s)	369, 397, 573
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	2 cut(s)	28, 1071
BstYI	RGATCY	2 cut(s)	28, 1071
BsuI	GTATCC	1 cut(s)	705
BsuRI	GGCC	1 cut(s)	948
BtgI	CCRYGG	2 cut(s)	738, 1157
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	200, 865, 1167
BtsI	GCAGTG	1 cut(s)	1036
BtsIMutI	CAGTG	1 cut(s)	1036
BveI	ACCTGC	1 cut(s)	291
CciI	TCATGA	1 cut(s)	403
Cfr10I	RCCGGY	1 cut(s)	778
CseI	GACGC	1 cut(s)	443
Csp6I	GTAC	2 cut(s)	343, 621
CviAII	CATG	5 cut(s)	404, 554, 603, 1009, 1158
CviQI	GTAC	2 cut(s)	343, 621
DdeI	CTNAG	7 cut(s)	32, 319, 330, 516, 813, 1038, 1056
DpnI	GATC	5 cut(s)	30, 420, 939, 1025, 1073
DpnII	GATC	5 cut(s)	28, 418, 937, 1023, 1071
Eam1104I	CTCTTC	5 cut(s)	135, 142, 375, 398, 444
EarI	CTCTTC	5 cut(s)	135, 142, 375, 398, 444
Eco130I	CCWWGG	1 cut(s)	1157
Eco32I	GATATC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	356
Eco88I	CYCGRG	2 cut(s)	69, 635
EcoRII	CCWGG	1 cut(s)	697
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	1157
ErhI	CCWWGG	1 cut(s)	1157
Esp3I	CGTCTC	1 cut(s)	1052
FaeI	CATG	5 cut(s)	407, 557, 606, 1012, 1161
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	5 cut(s)	403, 553, 602, 1008, 1157
FauNDI	CATATG	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	937
FblI	GTMKAC	1 cut(s)	356
Fnu4HI	GCNGC	3 cut(s)	383, 386, 587
FokI	GGATG	3 cut(s)	187, 872, 1174
Fsp4HI	GCNGC	3 cut(s)	383, 386, 587
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	3 cut(s)	383, 386, 587
HaeIII	GGCC	1 cut(s)	948
HapII	CCGG	3 cut(s)	204, 270, 779
HgaI	GACGC	1 cut(s)	443
Hin1II	CATG	5 cut(s)	407, 557, 606, 1012, 1161
HindIII	AAGCTT	1 cut(s)	423
HinfI	GANTC	6 cut(s)	170, 181, 244, 326, 407, 908
HpaII	CCGG	3 cut(s)	204, 270, 779
HphI	GGTGA	4 cut(s)	132, 272, 793, 1055
Hpy166II	GTNNAC	3 cut(s)	357, 513, 742
Hpy188I	TCNGA	4 cut(s)	375, 533, 913, 1057
Hpy188III	TCNNGA	6 cut(s)	9, 88, 404, 416, 458, 635
Hpy8I	GTNNAC	3 cut(s)	357, 513, 742
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	7 cut(s)	410, 469, 514, 683, 926, 1084, 1143
HpyCH4III	ACNGT	2 cut(s)	572, 739
HpyCH4IV	ACGT	2 cut(s)	545, 1061
HpyCH4V	TGCA	2 cut(s)	385, 863
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 535
HpyF3I	CTNAG	7 cut(s)	32, 319, 330, 516, 813, 1038, 1056
HpySE526I	ACGT	2 cut(s)	545, 1061
Hsp92II	CATG	5 cut(s)	407, 557, 606, 1012, 1161
KpnI	GGTACC	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	937
Kzo9I	GATC	5 cut(s)	28, 418, 937, 1023, 1071
LguI	GCTCTTC	2 cut(s)	375, 444
LmnI	GCTCC	3 cut(s)	478, 534, 543
Lsp1109I	GCAGC	3 cut(s)	369, 397, 573
LweI	GCATC	4 cut(s)	88, 355, 799, 850
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	2 cut(s)	545, 1061
MaeIII	GTNAC	2 cut(s)	1004, 1033
MalI	GATC	5 cut(s)	30, 420, 939, 1025, 1073
MboI	GATC	5 cut(s)	28, 418, 937, 1023, 1071
MfeI	CAATTG	1 cut(s)	996
MflI	RGATCY	2 cut(s)	28, 1071
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	4 cut(s)	595, 753, 794, 996
MmeI	TCCRAC	1 cut(s)	936
MseI	TTAA	4 cut(s)	93, 630, 903, 1143
MslI	CAYNNNNRTG	1 cut(s)	402
MspA1I	CMGCKG	2 cut(s)	323, 382
MspI	CCGG	3 cut(s)	204, 270, 779
MspR9I	CCNGG	1 cut(s)	699
MunI	CAATTG	1 cut(s)	996
MvaI	CCWGG	1 cut(s)	699
MwoI	GCNNNNNNNGC	2 cut(s)	283, 535
NcoI	CCATGG	1 cut(s)	1157
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	5 cut(s)	28, 418, 937, 1023, 1071
NlaIII	CATG	5 cut(s)	407, 557, 606, 1012, 1161
NlaIV	GGNNCC	3 cut(s)	344, 480, 924
NmuCI	GTSAC	2 cut(s)	1004, 1033
NspI	RCATGY	1 cut(s)	606
PagI	TCATGA	1 cut(s)	403
PaqCI	CACCTGC	1 cut(s)	291
PciI	ACATGT	1 cut(s)	602
PciSI	GCTCTTC	2 cut(s)	375, 444
PfeI	GAWTC	6 cut(s)	170, 181, 244, 326, 407, 908
PflMI	CCANNNNNTGG	1 cut(s)	152
PkrI	GCNGC	3 cut(s)	384, 387, 588
Ppu21I	YACGTR	1 cut(s)	546
PscI	ACATGT	1 cut(s)	602
PsiI	TTATAA	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	697
PspGI	CCWGG	1 cut(s)	697
PspN4I	GGNNCC	3 cut(s)	344, 480, 924
PstI	CTGCAG	1 cut(s)	387
PsuI	RGATCY	2 cut(s)	28, 1071
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	2 cut(s)	344, 622
RsaNI	GTAC	2 cut(s)	343, 621
RseI	CAYNNNNRTG	1 cut(s)	402
SapI	GCTCTTC	2 cut(s)	375, 444
SaqAI	TTAA	4 cut(s)	93, 630, 903, 1143
SatI	GCNGC	3 cut(s)	383, 386, 587
Sau3AI	GATC	5 cut(s)	28, 418, 937, 1023, 1071
ScrFI	CCNGG	1 cut(s)	699
SduI	GDGCHC	1 cut(s)	51
SfaNI	GCATC	4 cut(s)	88, 355, 799, 850
SfcI	CTRYAG	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	402
Sse9I	AATT	4 cut(s)	595, 753, 794, 996
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	1 cut(s)	697
StyI	CCWWGG	1 cut(s)	1157
TaaI	ACNGT	2 cut(s)	572, 739
TaiI	ACGT	2 cut(s)	548, 1064
TaqI	TCGA	8 cut(s)	10, 173, 179, 292, 432, 762, 1085, 1109
TasI	AATT	4 cut(s)	595, 753, 794, 996
TfiI	GAWTC	6 cut(s)	170, 181, 244, 326, 407, 908
Tru1I	TTAA	4 cut(s)	93, 630, 903, 1143
Tru9I	TTAA	4 cut(s)	93, 630, 903, 1143
TscAI	CASTG	1 cut(s)	1036
TseFI	GTSAC	2 cut(s)	1004, 1033
TseI	GCWGC	3 cut(s)	382, 385, 586
Tsp45I	GTSAC	2 cut(s)	1004, 1033
TspDTI	ATGAA	3 cut(s)	253, 392, 1178
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	1 cut(s)	1036
Van91I	CCANNNNNTGG	1 cut(s)	152
XapI	RAATTY	2 cut(s)	595, 794
XbaI	TCTAGA	1 cut(s)	415
XceI	RCATGY	1 cut(s)	606
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	356
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.