pycom17g06550

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011361
Physical Location & Seq
Reverse (-)
4731462 .. 4732738
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 648 bp
ATGGGTCAACTTGGGCATTCTTCCCTTCAATATGGGGAGAAAGAGTTATTGCCTAGGCGAGTGGTTGCACTTGATGGAATAGTCATAAAGGATGTTGCATGCGGTGGTGTACATACATGTGCTGTGACTCAGAAGGGAGCTCTTTATGCTTGGGGTGGTGGTCGAGCAGGGCAGTTAGGCCTTGGCCCTGAAACGGGATTATTTTCATGCAACCCTAATGAATCGCAGTCTTTTTTCCGTAACATTCCTGCATTGGTTGTTCCAACTAGTGTGCAACTCATTGCGTGTGGACACTCCCACACACTTATCTCTACAAGGGATGGAAGAATTCATGGATGGGGCTACAATAGCTATGGTCAGGCATCTAACGAGAAATCAACTTATGCTTGGTATCCATCCCCGGTTGATTGGTGCGTTGGGGAAGTGCGAAAACTTGCAGCTGGTGGTGGCCATTCAGCCGTGTTGACTGATGCATGTTCCTTGAAGGAATTGTGTGAATTTAGGCTTGCAGATAGTGTTAATCTAAAGAATGCTTCTACAATTGAAGACATTGCGTCTAGAACAGGCTCAGATGCTTTAGCACGGCTTTGTGAAAGATTAAGGCAGCACGTCCTCGAGGGTGGCGACTGTGAATATGAAGACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
RCC1

Protein Analysis

216

Amino Acids

23.03

Weight (kDa)

5.96

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 2 - 158 2.7e-29 RCC1-like domain
RCC1 PF00415 2 - 42 5e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 29 - 58 3.1e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 45 - 102 2.8e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 92 - 120 3.6e-10 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02300 AT3G02300
fragaria_vesca FvH4_6g46400 FvH4_6g46400
malus_domestica MD09G1074200.v1.1 MD17G1065600.v1.1
prunus_persica Prupe.3G249200_v2.0.a1 Prupe.3G249200_v2.0.a1
pyrus_communis pycom09g00130 pycom17g06550
rosa_chinensis RchiOBHm_Chr2g0164931
rosa_laevigata RLG00000021498
rosa_multiflora Rmu_sc0001097.1_g000002
rosa_roxburghii Rroxscaffold_2G00086200
rosa_rugosa Rorug02G0511300
rosa_samantha Rh2AG579600 Rh2BG590600 Rh2CG561300 Rh2DG601000
rosa_wichuraiana Rw2G048110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 614
AciI CCGC 1 cut(s) 102
AcoI YGGCCR 1 cut(s) 448
AcsI RAATTY 2 cut(s) 327, 497
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 2 cut(s) 193, 194
AflIII ACRYGT 1 cut(s) 116
AgsI TTSAA 3 cut(s) 29, 484, 545
AhdI GACNNNNNGTC 1 cut(s) 553
AhlI ACTAGT 1 cut(s) 266
AjiI CACGTC 1 cut(s) 610
AluBI AGCT 3 cut(s) 140, 351, 440
AluI AGCT 3 cut(s) 140, 351, 440
Alw21I GWGCWC 1 cut(s) 142
Ama87I CYCGRG 1 cut(s) 614
AoxI GGCC 3 cut(s) 178, 184, 448
ApeKI GCWGC 2 cut(s) 437, 604
ApoI RAATTY 2 cut(s) 327, 497
AspA2I CCTAGG 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 401
AvaI CYCGRG 1 cut(s) 614
AvrII CCTAGG 1 cut(s) 53
BalI TGGCCA 1 cut(s) 450
BanII GRGCYC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 552
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 2 cut(s) 449, 616
BccI CCATC 4 cut(s) 68, 314, 330, 403
BceAI ACGGC 2 cut(s) 443, 599
BciVI GTATCC 1 cut(s) 402
BcnI CCSGG 1 cut(s) 401
BcuI ACTAGT 1 cut(s) 266
BfaI CTAG 3 cut(s) 54, 267, 558
BfuI GTATCC 1 cut(s) 402
BisI GCNGC 2 cut(s) 438, 605
BlnI CCTAGG 1 cut(s) 53
BlsI GCNGC 2 cut(s) 439, 606
Bme1390I CCNGG 1 cut(s) 401
BmeRI GACNNNNNGTC 1 cut(s) 553
BmeT110I CYCGRG 1 cut(s) 614
BmgBI CACGTC 1 cut(s) 610
BmgT120I GGNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 401
BmsI GCATC 3 cut(s) 371, 460, 562
BpiI GAAGAC 1 cut(s) 552
BpuMI CCSGG 1 cut(s) 401
BsaJI CCNNGG 3 cut(s) 53, 181, 399
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 194
Bse3DI GCAATG 2 cut(s) 279, 549
BseDI CCNNGG 3 cut(s) 53, 181, 399
BseGI GGATG 4 cut(s) 97, 325, 341, 395
BseLI CCNNNNNNNGG 2 cut(s) 193, 194
BseMI GCAATG 2 cut(s) 279, 549
BseMII CTCAG 2 cut(s) 143, 582
BseXI GCAGC 2 cut(s) 449, 616
BshFI GGCC 3 cut(s) 180, 186, 450
BsiHKAI GWGCWC 1 cut(s) 142
BsiHKCI CYCGRG 1 cut(s) 614
BsiSI CCGG 1 cut(s) 401
BslI CCNNNNNNNGG 2 cut(s) 193, 194
BsmI GAATGC 2 cut(s) 16, 535
BsnI GGCC 3 cut(s) 180, 186, 450
BsoBI CYCGRG 1 cut(s) 614
Bsp1286I GDGCHC 1 cut(s) 142
Bsp1407I TGTACA 1 cut(s) 109
BspACI CCGC 1 cut(s) 102
BspANI GGCC 3 cut(s) 180, 186, 450
BspCNI CTCAG 2 cut(s) 142, 581
BsrDI GCAATG 2 cut(s) 279, 549
BsrGI TGTACA 1 cut(s) 109
BssECI CCNNGG 3 cut(s) 53, 181, 399
BssT1I CCWWGG 2 cut(s) 53, 181
Bst4CI ACNGT 1 cut(s) 629
BstAUI TGTACA 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 100, 507
BstDEI CTNAG 2 cut(s) 129, 568
BstF5I GGATG 4 cut(s) 97, 325, 341, 395
BstMWI GCNNNNNNNGC 2 cut(s) 146, 348
BstNSI RCATGY 3 cut(s) 102, 120, 477
BstSCI CCNGG 1 cut(s) 399
BstV1I GCAGC 2 cut(s) 449, 616
BstV2I GAAGAC 1 cut(s) 552
BsuI GTATCC 1 cut(s) 402
BsuRI GGCC 3 cut(s) 180, 186, 450
BtrI CACGTC 1 cut(s) 610
BtsCI GGATG 4 cut(s) 97, 325, 341, 395
Cac8I GCNNGC 2 cut(s) 100, 507
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 543
Csp6I GTAC 1 cut(s) 110
CviAII CATG 5 cut(s) 99, 117, 207, 332, 474
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 2 cut(s) 129, 568
DriI GACNNNNNGTC 1 cut(s) 553
EaeI YGGCCR 1 cut(s) 448
Eam1105I GACNNNNNGTC 1 cut(s) 553
Ecl136II GAGCTC 1 cut(s) 140
Eco130I CCWWGG 2 cut(s) 53, 181
Eco147I AGGCCT 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 140
Eco88I CYCGRG 1 cut(s) 614
EcoICRI GAGCTC 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 327
EcoT14I CCWWGG 2 cut(s) 53, 181
EcoT22I ATGCAT 1 cut(s) 475
EcoT38I GRGCYC 1 cut(s) 142
ErhI CCWWGG 2 cut(s) 53, 181
FaeI CATG 5 cut(s) 102, 120, 210, 335, 477
FatI CATG 5 cut(s) 98, 116, 206, 331, 473
Fnu4HI GCNGC 2 cut(s) 438, 605
FokI GGATG 4 cut(s) 104, 332, 348, 382
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 2 cut(s) 438, 605
FspBI CTAG 3 cut(s) 54, 267, 558
GluI GCNGC 2 cut(s) 438, 605
HaeIII GGCC 3 cut(s) 180, 186, 450
HapII CCGG 1 cut(s) 401
HgaI GACGC 1 cut(s) 543
Hin1II CATG 5 cut(s) 102, 120, 210, 335, 477
HincII GTYRAC 2 cut(s) 8, 465
HindII GTYRAC 2 cut(s) 8, 465
HinfI GANTC 2 cut(s) 127, 221
HpaII CCGG 1 cut(s) 401
Hpy166II GTNNAC 4 cut(s) 8, 110, 290, 465
Hpy188I TCNGA 2 cut(s) 132, 571
Hpy188III TCNNGA 1 cut(s) 558
Hpy8I GTNNAC 4 cut(s) 8, 110, 290, 465
HpyAV CCTTC 3 cut(s) 35, 127, 478
HpyCH4III ACNGT 1 cut(s) 629
HpyCH4IV ACGT 1 cut(s) 609
HpyCH4V TGCA 8 cut(s) 68, 98, 210, 251, 274, 437, 473, 509
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 348
HpyF3I CTNAG 2 cut(s) 129, 568
HpySE526I ACGT 1 cut(s) 609
Hsp92II CATG 5 cut(s) 102, 120, 210, 335, 477
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 7 cut(s) 153, 201, 261, 344, 414, 426, 549
Lsp1109I GCAGC 2 cut(s) 449, 616
LweI GCATC 3 cut(s) 371, 460, 562
MaeI CTAG 3 cut(s) 54, 267, 558
MaeII ACGT 1 cut(s) 609
MaeIII GTNAC 2 cut(s) 124, 239
MboII GAAGA 3 cut(s) 12, 336, 557
MfeI CAATTG 1 cut(s) 540
MhlI GDGCHC 1 cut(s) 142
MlsI TGGCCA 1 cut(s) 450
MluCI AATT 5 cut(s) 327, 488, 497, 540, 643
MluNI TGGCCA 1 cut(s) 450
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 287
MnlI CCTC 2 cut(s) 610, 623
Mox20I TGGCCA 1 cut(s) 450
Mph1103I ATGCAT 1 cut(s) 475
MscI TGGCCA 1 cut(s) 450
MseI TTAA 2 cut(s) 519, 599
MslI CAYNNNNRTG 1 cut(s) 117
Msp20I TGGCCA 1 cut(s) 450
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 401
MunI CAATTG 1 cut(s) 540
Mva1269I GAATGC 2 cut(s) 16, 535
MwoI GCNNNNNNNGC 2 cut(s) 146, 348
NciI CCSGG 1 cut(s) 401
NlaIII CATG 5 cut(s) 102, 120, 210, 335, 477
NmuCI GTSAC 1 cut(s) 124
NsiI ATGCAT 1 cut(s) 475
NspI RCATGY 3 cut(s) 102, 120, 477
PaeI GCATGC 1 cut(s) 102
PaeR7I CTCGAG 1 cut(s) 614
PceI AGGCCT 1 cut(s) 180
PciI ACATGT 1 cut(s) 116
PcsI WCGNNNNNNNCGW 1 cut(s) 621
PctI GAATGC 2 cut(s) 16, 535
PfeI GAWTC 1 cut(s) 221
PkrI GCNGC 2 cut(s) 439, 606
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PscI ACATGT 1 cut(s) 116
Psp124BI GAGCTC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 185
PspXI VCTCGAGB 1 cut(s) 614
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 117
SacI GAGCTC 1 cut(s) 142
SaqAI TTAA 2 cut(s) 519, 599
SatI GCNGC 2 cut(s) 438, 605
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 401
SduI GDGCHC 1 cut(s) 142
SetI ASST 4 cut(s) 142, 353, 442, 612
SfaNI GCATC 3 cut(s) 371, 460, 562
Sfr274I CTCGAG 1 cut(s) 614
SlaI CTCGAG 1 cut(s) 614
SmiMI CAYNNNNRTG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
SpeI ACTAGT 1 cut(s) 266
SphI GCATGC 1 cut(s) 102
Sse9I AATT 5 cut(s) 327, 488, 497, 540, 643
SseBI AGGCCT 1 cut(s) 180
SsiI CCGC 1 cut(s) 102
SspMI CTAG 3 cut(s) 54, 267, 558
SstI GAGCTC 1 cut(s) 142
StuI AGGCCT 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 399
StyI CCWWGG 2 cut(s) 53, 181
TaaI ACNGT 1 cut(s) 629
TaiI ACGT 1 cut(s) 612
TaqI TCGA 2 cut(s) 163, 615
TasI AATT 5 cut(s) 327, 488, 497, 540, 643
TatI WGTACW 1 cut(s) 109
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 2 cut(s) 519, 599
Tru9I TTAA 2 cut(s) 519, 599
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 2 cut(s) 437, 604
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 3 cut(s) 195, 234, 320
TspGWI ACGGA 1 cut(s) 227
XapI RAATTY 2 cut(s) 327, 497
XbaI TCTAGA 1 cut(s) 557
XceI RCATGY 3 cut(s) 102, 120, 477
XhoI CTCGAG 1 cut(s) 614
XmaJI CCTAGG 1 cut(s) 53
XspI CTAG 3 cut(s) 54, 267, 558
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.