Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0016904

Physical Location & Seq

Genomic Coordinates Forward (+)

5032976 .. 5034563

Gene Structure 1588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGCCAACTTCCAACTGCACTTATGGTCTGAGAGAGCTGCTTGTGAAAGTATTGAAGAGGAATACGAAAAGAATTGATCAGTCTTCTGGTGATGAGATTAGTGAGATGGCAAGCGTTACGAAAGAAGATAGAATTAGCAGTCTTTCTTGGGATGTATTGGACGGGATCCTTGTTCGCTTGCCTTTGAAAGAAGTTGTGAGGACTAGTATCTTATCCCGCGGGTGGAGGAGGCATAAATGGACTGGCATTTCACAGTTTGTTATTGATGACAAATGCATACCAAGCCGGATATCAGACAAAGTCGCAAGATGGGAATCAATCATGGAAATTCTTCGTCAAGTTCAATTGCATCACACCGGTCCTATAGAAAAGTTTAAGCTTGCTGCTTATTGCCGGCCTGACCATTCTGATTTAGACCAGTGGATTCATTTTTTAGCTGACAAAGGTCTCAAGGAGTTCATCCTACAGGAGTTTGACACTATAAAACGTTTTAACTTGCCCTTTTGTCTATTCTCATGTCCACTTTTAAATCGCTTGGAGCTTTTCGGTTGTAGAATCAAGCCATCTTCTGAAGCCATCGGATTCAAGAGCCTCGTGAACCTCCATCTCAATGAAGTTTGTGTAACTGGTGGCACGCTAGAATGGTTGGTTATAAATTCTCCGGTTCTTGAAAGATTGACACTGTTGAACATTGATCATCAAATTGTTCTTAGAATTGGCAACACGAATCTCAAGTATCTTAAAGTAGATTCCAACTTTGACGATATTTATCTTGAAAACAGTCCATCTCTTGCTTGTGTTGACATTGGCTTGAGGGCGAGGGTCATACCGCGACTTTTTGGGTCCGAAGGAGGGAAGCTAATCAGGGTTATAGGCTGTCTACATGCTATCAAGAAACTGAGCCTATCCAGTGCCATCCTGGCGTTTCTGGGCAATAATGGTGTACCGGACAAACTTCCTGCTCTGCTTCCACATCTGTCAGTTCTCGAACTCAAGGATGTACAGTTGGATTCTTTGACAGAAGTGTTGGTTTGCGTCTGCATTTTTCGAAGTGCTCCTAATTTAGAGGAACTGCACCTTTCAGTTGCTAGTACAACTGTGTATTACAGACCTGCTGCTGACTTCCTCATCACTAAGTTGTCAAACCACTACTTCGAACAACTTAAAGTAGCGAAGATAAGAGCGGTACAAAATGTTCAAACTGAGACAATACTCATCCAGCTCTTACTCGCTCATTCGCCCGTGCTGAAAAGAATGACCATTGTACATTACGGAAGCAGAATTTTTCCAACAGAAGTGCTGGAGCAATCTGTGCCAGCTTCAAAAGATGTCGAAATTTTCAACTTATGCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

452

Amino Acids

51.01

Weight (kDa)

8.51

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	118 - 420	2.4e-16	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	138 - 359	4.6e-22	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016904)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45851
malus_domestica	MD09G1079300.v1.1 MD17G1069700.v1.1
prunus_persica	Prupe.3G245000_v2.0.a1 Prupe.3G245000_v2.0.a1 Prupe.3G245000_v2.0.a1 Prupe.3G245000_v2.0.a1 Prupe.3G245000_v2.0.a1
pyrus_communis	pycom09g00610 pycom17g06980
rosa_laevigata	RLG00000021436
rosa_rugosa	Rorug02G0506500
rosa_samantha	Rh2DG594900
rosa_wichuraiana	Rw2G047540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	653
Acc36I	ACCTGC	1 cut(s)	1120
AccBSI	CCGCTC	1 cut(s)	1184
AccI	GTMKAC	1 cut(s)	880
AccII	CGCG	2 cut(s)	219, 832
AciI	CCGC	4 cut(s)	217, 219, 830, 1184
AclI	AACGTT	1 cut(s)	487
AclWI	GGATC	2 cut(s)	160, 173
AcsI	RAATTY	4 cut(s)	327, 655, 1281, 1335
AcuI	CTGAAG	1 cut(s)	591
AfaI	GTAC	5 cut(s)	945, 1002, 1093, 1188, 1266
AfiI	CCNNNNNNNGG	2 cut(s)	222, 852
AgeI	ACCGGT	1 cut(s)	356
AhlI	ACTAGT	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	918
AluBI	AGCT	7 cut(s)	37, 379, 437, 541, 859, 1222, 1319
AluI	AGCT	7 cut(s)	37, 379, 437, 541, 859, 1222, 1319
Alw21I	GWGCWC	1 cut(s)	1057
Alw26I	GTCTC	2 cut(s)	452, 1199
AlwI	GGATC	2 cut(s)	160, 173
AoxI	GGCC	1 cut(s)	395
ApeKI	GCWGC	3 cut(s)	37, 383, 1115
ApoI	RAATTY	4 cut(s)	327, 655, 1281, 1335
AsiGI	ACCGGT	1 cut(s)	356
Asp700I	GAANNNNTTC	1 cut(s)	330
AspS9I	GGNCC	2 cut(s)	359, 843
AsuHPI	GGTGA	1 cut(s)	101
AsuII	TTCGAA	2 cut(s)	1048, 1155
AvaII	GGWCC	2 cut(s)	359, 843
BamHI	GGATCC	1 cut(s)	165
BauI	CACGAG	1 cut(s)	593
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	1057
BbvI	GCAGC	3 cut(s)	24, 370, 1102
BccI	CCATC	7 cut(s)	100, 303, 571, 584, 612, 793, 923
BciT130I	CCWGG	1 cut(s)	920
BclI	TGATCA	2 cut(s)	76, 694
BcoDI	GTCTC	2 cut(s)	452, 1199
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	3 cut(s)	204, 638, 1089
BfmI	CTRYAG	2 cut(s)	363, 464
BfuAI	ACCTGC	1 cut(s)	1120
BglI	GCCNNNNNGGC	1 cut(s)	920
BisI	GCNGC	3 cut(s)	38, 384, 1116
BlsI	GCNGC	3 cut(s)	39, 385, 1117
Bme1390I	CCNGG	1 cut(s)	920
Bme18I	GGWCC	2 cut(s)	359, 843
BmgT120I	GGNCC	2 cut(s)	359, 843
BmiI	GGNNCC	2 cut(s)	167, 844
BmrFI	CCNGG	1 cut(s)	920
BmsI	GCATC	1 cut(s)	358
BoxI	GACNNNNGTC	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	1322
Bpu14I	TTCGAA	2 cut(s)	1048, 1155
BpuEI	CTTGAG	4 cut(s)	434, 716, 832, 977
BsaBI	GATNNNNATC	2 cut(s)	313, 768
BsaI	GGTCTC	1 cut(s)	452
BsaJI	CCNNGG	1 cut(s)	217
BsaWI	WCCGGW	3 cut(s)	356, 661, 946
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 852
Bse118I	RCCGGY	2 cut(s)	356, 393
Bse1I	ACTGG	4 cut(s)	247, 418, 631, 909
Bse8I	GATNNNNATC	2 cut(s)	313, 768
BseBI	CCWGG	1 cut(s)	920
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	5 cut(s)	157, 459, 915, 1003, 1215
BseJI	GATNNNNATC	2 cut(s)	313, 768
BseLI	CCNNNNNNNGG	2 cut(s)	222, 852
BseMII	CTCAG	3 cut(s)	20, 890, 1194
BseNI	ACTGG	4 cut(s)	247, 418, 631, 909
BseRI	GAGGAG	1 cut(s)	241
BseXI	GCAGC	3 cut(s)	24, 370, 1102
BsgI	GTGCAG	1 cut(s)	1058
Bsh1236I	CGCG	2 cut(s)	219, 832
BshFI	GGCC	1 cut(s)	397
BshTI	ACCGGT	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	1057
BsiSI	CCGG	5 cut(s)	286, 357, 394, 662, 947
BslI	CCNNNNNNNGG	2 cut(s)	222, 852
BsmAI	GTCTC	2 cut(s)	452, 1199
BsnI	GGCC	1 cut(s)	397
Bso31I	GGTCTC	1 cut(s)	452
Bsp119I	TTCGAA	2 cut(s)	1048, 1155
Bsp1286I	GDGCHC	1 cut(s)	1057
Bsp1407I	TGTACA	2 cut(s)	1000, 1264
Bsp143I	GATC	3 cut(s)	76, 165, 694
BspACI	CCGC	4 cut(s)	217, 219, 830, 1184
BspANI	GGCC	1 cut(s)	397
BspCNI	CTCAG	3 cut(s)	21, 891, 1195
BspFNI	CGCG	2 cut(s)	219, 832
BspLI	GGNNCC	2 cut(s)	167, 844
BspMI	ACCTGC	1 cut(s)	1120
BspPI	GGATC	2 cut(s)	160, 173
BspT104I	TTCGAA	2 cut(s)	1048, 1155
BspTNI	GGTCTC	1 cut(s)	452
BsrBI	CCGCTC	1 cut(s)	1184
BsrFI	RCCGGY	2 cut(s)	356, 393
BsrGI	TGTACA	2 cut(s)	1000, 1264
BsrI	ACTGG	4 cut(s)	247, 418, 631, 909
BssAI	RCCGGY	2 cut(s)	356, 393
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	3 cut(s)	76, 165, 694
BssSI	CACGAG	1 cut(s)	593
Bst2BI	CACGAG	1 cut(s)	593
Bst2UI	CCWGG	1 cut(s)	920
Bst4CI	ACNGT	5 cut(s)	255, 684, 782, 1005, 1099
Bst6I	CTCTTC	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	1312
BstAUI	TGTACA	2 cut(s)	1000, 1264
BstBI	TTCGAA	2 cut(s)	1048, 1155
BstC8I	GCNNGC	6 cut(s)	112, 179, 381, 395, 635, 1317
BstDEI	CTNAG	5 cut(s)	29, 710, 899, 1134, 1203
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	5 cut(s)	157, 459, 915, 1003, 1215
BstFNI	CGCG	2 cut(s)	219, 832
BstKTI	GATC	3 cut(s)	79, 168, 697
BstMAI	GTCTC	2 cut(s)	452, 1199
BstMBI	GATC	3 cut(s)	76, 165, 694
BstMWI	GCNNNNNNNGC	3 cut(s)	282, 920, 1312
BstNI	CCWGG	1 cut(s)	920
BstNSI	RCATGY	1 cut(s)	887
BstPAI	GACNNNNGTC	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	918
BstSFI	CTRYAG	2 cut(s)	363, 464
BstUI	CGCG	2 cut(s)	219, 832
BstV1I	GCAGC	3 cut(s)	24, 370, 1102
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	397
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	5 cut(s)	157, 459, 915, 1003, 1215
BtsIMutI	CAGTG	3 cut(s)	425, 680, 916
BveI	ACCTGC	1 cut(s)	1120
Cac8I	GCNNGC	6 cut(s)	112, 179, 381, 395, 635, 1317
Cfr10I	RCCGGY	2 cut(s)	356, 393
Cfr13I	GGNCC	2 cut(s)	359, 843
Cfr42I	CCGCGG	1 cut(s)	220
CseI	GACGC	1 cut(s)	1024
Csp6I	GTAC	5 cut(s)	944, 1001, 1092, 1187, 1265
CspAI	ACCGGT	1 cut(s)	356
CviAII	CATG	3 cut(s)	322, 516, 884
CviQI	GTAC	5 cut(s)	944, 1001, 1092, 1187, 1265
DdeI	CTNAG	5 cut(s)	29, 710, 899, 1134, 1203
DpnI	GATC	3 cut(s)	78, 167, 696
DpnII	GATC	3 cut(s)	76, 165, 694
DraI	TTTAAA	1 cut(s)	528
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco31I	GGTCTC	1 cut(s)	452
Eco32I	GATATC	1 cut(s)	291
Eco47I	GGWCC	2 cut(s)	359, 843
Eco57I	CTGAAG	1 cut(s)	591
EcoRII	CCWGG	1 cut(s)	918
EcoRV	GATATC	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	278
FaeI	CATG	3 cut(s)	325, 519, 887
FatI	CATG	3 cut(s)	321, 515, 883
FauI	CCCGC	2 cut(s)	212, 224
FbaI	TGATCA	2 cut(s)	76, 694
FblI	GTMKAC	1 cut(s)	880
Fnu4HI	GCNGC	3 cut(s)	38, 384, 1116
FokI	GGATG	5 cut(s)	164, 446, 902, 1010, 1202
Fsp4HI	GCNGC	3 cut(s)	38, 384, 1116
FspBI	CTAG	3 cut(s)	204, 638, 1089
GluI	GCNGC	3 cut(s)	38, 384, 1116
GsuI	CTGGAG	1 cut(s)	1322
HaeIII	GGCC	1 cut(s)	397
HapII	CCGG	5 cut(s)	286, 357, 394, 662, 947
HgaI	GACGC	1 cut(s)	1024
Hin1II	CATG	3 cut(s)	325, 519, 887
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	7 cut(s)	314, 424, 555, 582, 727, 749, 1010
HpaII	CCGG	5 cut(s)	286, 357, 394, 662, 947
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	5 cut(s)	521, 598, 802, 881, 944
Hpy188I	TCNGA	6 cut(s)	30, 295, 409, 571, 581, 847
Hpy188III	TCNNGA	6 cut(s)	586, 595, 668, 773, 892, 986
Hpy8I	GTNNAC	5 cut(s)	521, 598, 802, 881, 944
HpyAV	CCTTC	1 cut(s)	842
HpyCH4III	ACNGT	5 cut(s)	255, 684, 782, 1005, 1099
HpyCH4IV	ACGT	1 cut(s)	487
HpyCH4V	TGCA	5 cut(s)	18, 276, 349, 1041, 1075
HpyF10VI	GCNNNNNNNGC	3 cut(s)	282, 920, 1312
HpyF3I	CTNAG	5 cut(s)	29, 710, 899, 1134, 1203
HpySE526I	ACGT	1 cut(s)	487
Hsp92II	CATG	3 cut(s)	325, 519, 887
KroI	GCCGGC	1 cut(s)	393
KroNI	GCCGGC	1 cut(s)	395
Ksp22I	TGATCA	2 cut(s)	76, 694
KspI	CCGCGG	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	76, 165, 694
LmnI	GCTCC	3 cut(s)	538, 1060, 1303
Lsp1109I	GCAGC	3 cut(s)	24, 370, 1102
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	3 cut(s)	204, 638, 1089
MaeII	ACGT	1 cut(s)	487
MaeIII	GTNAC	2 cut(s)	115, 622
MalI	GATC	3 cut(s)	78, 167, 696
MbiI	CCGCTC	1 cut(s)	1184
MboI	GATC	3 cut(s)	76, 165, 694
MboII	GAAGA	6 cut(s)	67, 75, 137, 323, 558, 1186
MfeI	CAATTG	1 cut(s)	344
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	1057
MmeI	TCCRAC	4 cut(s)	36, 777, 987, 1313
Mph1103I	ATGCAT	1 cut(s)	278
MroNI	GCCGGC	1 cut(s)	393
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	5 cut(s)	375, 492, 527, 741, 1164
MslI	CAYNNNNRTG	1 cut(s)	609
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	5 cut(s)	286, 357, 394, 662, 947
MspR9I	CCNGG	1 cut(s)	920
MunI	CAATTG	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	920
MvnI	CGCG	2 cut(s)	219, 832
MwoI	GCNNNNNNNGC	3 cut(s)	282, 920, 1312
NaeI	GCCGGC	1 cut(s)	395
NdeII	GATC	3 cut(s)	76, 165, 694
NgoMIV	GCCGGC	1 cut(s)	393
NlaIII	CATG	3 cut(s)	325, 519, 887
NlaIV	GGNNCC	2 cut(s)	167, 844
NsiI	ATGCAT	1 cut(s)	278
NspI	RCATGY	1 cut(s)	887
NspV	TTCGAA	2 cut(s)	1048, 1155
PdiI	GCCGGC	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	7 cut(s)	314, 424, 555, 582, 727, 749, 1010
PflFI	GACNNNGTC	1 cut(s)	299
PinAI	ACCGGT	1 cut(s)	356
PkrI	GCNGC	3 cut(s)	39, 385, 1117
PshAI	GACNNNNGTC	1 cut(s)	444
PsiI	TTATAA	1 cut(s)	653
Psp1406I	AACGTT	1 cut(s)	487
Psp6I	CCWGG	1 cut(s)	918
PspGI	CCWGG	1 cut(s)	918
PspN4I	GGNNCC	2 cut(s)	167, 844
PspPI	GGNCC	2 cut(s)	359, 843
PsrI	GAACNNNNNNTAC	2 cut(s)	1179, 1211
PsuI	RGATCY	1 cut(s)	165
PsyI	GACNNNGTC	1 cut(s)	299
RsaI	GTAC	5 cut(s)	945, 1002, 1093, 1188, 1266
RsaNI	GTAC	5 cut(s)	944, 1001, 1092, 1187, 1265
RseI	CAYNNNNRTG	1 cut(s)	609
SacII	CCGCGG	1 cut(s)	220
SaqAI	TTAA	5 cut(s)	375, 492, 527, 741, 1164
SatI	GCNGC	3 cut(s)	38, 384, 1116
Sau3AI	GATC	3 cut(s)	76, 165, 694
Sau96I	GGNCC	2 cut(s)	359, 843
ScrFI	CCNGG	1 cut(s)	920
SduI	GDGCHC	1 cut(s)	1057
SfaNI	GCATC	1 cut(s)	358
SfcI	CTRYAG	2 cut(s)	363, 464
Sfr303I	CCGCGG	1 cut(s)	220
SfuI	TTCGAA	2 cut(s)	1048, 1155
SgrBI	CCGCGG	1 cut(s)	220
SinI	GGWCC	2 cut(s)	359, 843
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	4 cut(s)	449, 731, 811, 992
SmoI	CTYRAG	4 cut(s)	449, 731, 811, 992
SpeI	ACTAGT	1 cut(s)	203
SsiI	CCGC	4 cut(s)	217, 219, 830, 1184
SspMI	CTAG	3 cut(s)	204, 638, 1089
StyD4I	CCNGG	1 cut(s)	918
TaaI	ACNGT	5 cut(s)	255, 684, 782, 1005, 1099
TaiI	ACGT	1 cut(s)	490
TaqI	TCGA	4 cut(s)	987, 1048, 1155, 1332
TatI	WGTACW	3 cut(s)	1000, 1091, 1264
TfiI	GAWTC	7 cut(s)	314, 424, 555, 582, 727, 749, 1010
Tru1I	TTAA	5 cut(s)	375, 492, 527, 741, 1164
Tru9I	TTAA	5 cut(s)	375, 492, 527, 741, 1164
TscAI	CASTG	3 cut(s)	425, 687, 916
TseI	GCWGC	3 cut(s)	37, 383, 1115
TspDTI	ATGAA	3 cut(s)	416, 448, 627
TspGWI	ACGGA	1 cut(s)	1287
TspRI	CASTG	3 cut(s)	425, 687, 916
Tth111I	GACNNNGTC	1 cut(s)	299
VpaK11BI	GGWCC	2 cut(s)	359, 843
XapI	RAATTY	4 cut(s)	327, 655, 1281, 1335
XceI	RCATGY	1 cut(s)	887
XcmI	CCANNNNNNNNNTGG	1 cut(s)	916
XmiI	GTMKAC	1 cut(s)	880
XmnI	GAANNNNTTC	1 cut(s)	330
XspI	CTAG	3 cut(s)	204, 638, 1089
Zsp2I	ATGCAT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.