Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0017524

Physical Location & Seq

Genomic Coordinates Forward (+)

6720082 .. 6720432

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTGCAAAGGAGTACAAGAGAGTGGCTTCTGCCGGTCACCAAGTCTCATTCCTTCAGGAGGGTTGGTTTGCTGTGAACTGTGCAACTCAAGGGCTTCATTGTATTGCCTAGCAGACGATGCATTTTTGTGCAGGAAATGTGACCGATGGGTTCATGGGGCTAATTTCTTAGCACTCAGGCATGCCAGGTGGTTGTTATGCAACACATGCCAGAATCTTACGCAAAGATACGTCGTCGGGATTGCAGTTAAGGTGATGCTTCCGACCATTCTTAGTCGGGTACATAGAAACCGGTGTGATTCAAATGTCAAAAGAAGGTGCTCGGCTAAACGGAAAAGGCCTTTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010224 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030674 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060090 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

117

Amino Acids

13.2

Weight (kDa)

9.73

Isoelectric Point (pI)

59.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21890 AT4G15248
fragaria_vesca	FvH4_6g43580
malus_domestica	MD09G1104600.v1.1 MD17G1092200.v1.1
prunus_persica	Prupe.3G221100_v2.0.a1
pyrus_communis	pycom17g08930
rosa_chinensis	RchiOBHm_Chr2g0160161
rosa_roxburghii	Rroxscaffold_2G00090000
rosa_rugosa	Rorug02G0482000 Rorug02G0482100
rosa_samantha	Rh2CG531100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	39
AfaI	GTAC	2 cut(s)	15, 282
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgeI	ACCGGT	1 cut(s)	291
AgsI	TTSAA	1 cut(s)	303
AjnI	CCWGG	1 cut(s)	185
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	1 cut(s)	50
AoxI	GGCC	1 cut(s)	338
AsiGI	ACCGGT	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	30, 265
Bbv12I	GWGCWC	1 cut(s)	323
BccI	CCATC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	110
Bme1390I	CCNGG	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	187
BmsI	GCATC	2 cut(s)	109, 246
BpuEI	CTTGAG	1 cut(s)	73
BsaWI	WCCGGW	1 cut(s)	291
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse118I	RCCGGY	2 cut(s)	33, 291
BseBI	CCWGG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	190
BsgI	GTGCAG	1 cut(s)	151
BshFI	GGCC	1 cut(s)	340
BshTI	ACCGGT	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	323
BsiSI	CCGG	2 cut(s)	34, 292
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	340
Bsp1286I	GDGCHC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	340
BspCNI	CTCAG	1 cut(s)	189
BsrFI	RCCGGY	2 cut(s)	33, 291
BssAI	RCCGGY	2 cut(s)	33, 291
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	81
BstAPI	GCANNNNNTGC	2 cut(s)	119, 207
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	3 cut(s)	169, 176, 272
BstEII	GGTNACC	1 cut(s)	36
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstMAI	GTCTC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 207
BstNI	CCWGG	1 cut(s)	187
BstNSI	RCATGY	2 cut(s)	185, 210
BstPI	GGTNACC	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	183
Cfr10I	RCCGGY	2 cut(s)	33, 291
Csp6I	GTAC	2 cut(s)	14, 281
CspAI	ACCGGT	1 cut(s)	291
CviAII	CATG	3 cut(s)	155, 182, 207
CviJI	RGCY	5 cut(s)	27, 95, 161, 326, 340
CviKI_1	RGCY	5 cut(s)	27, 95, 161, 326, 340
CviQI	GTAC	2 cut(s)	14, 281
DdeI	CTNAG	3 cut(s)	169, 176, 272
Eco147I	AGGCCT	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	39
Eco91I	GGTNACC	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoO65I	GGTNACC	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	185
EcoT22I	ATGCAT	1 cut(s)	124
FaeI	CATG	3 cut(s)	158, 185, 210
FaiI	YATR	5 cut(s)	156, 183, 199, 208, 285
FatI	CATG	3 cut(s)	154, 181, 206
FspBI	CTAG	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	340
HapII	CCGG	2 cut(s)	34, 292
Hin1II	CATG	3 cut(s)	158, 185, 210
HinfI	GANTC	2 cut(s)	214, 299
HpaII	CCGG	2 cut(s)	34, 292
HphI	GGTGA	2 cut(s)	30, 265
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	2 cut(s)	57, 238
Hpy8I	GTNNAC	1 cut(s)	77
Hpy99I	CGWCG	2 cut(s)	236, 239
HpyAV	CCTTC	2 cut(s)	63, 309
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	6 cut(s)	6, 84, 122, 132, 201, 245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 207
HpyF3I	CTNAG	3 cut(s)	169, 176, 272
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	3 cut(s)	158, 185, 210
LpnPI	CCDG	8 cut(s)	42, 47, 118, 163, 172, 199, 224, 305
LweI	GCATC	2 cut(s)	109, 246
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	2 cut(s)	36, 140
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	1 cut(s)	53
Mph1103I	ATGCAT	1 cut(s)	124
MseI	TTAA	2 cut(s)	249, 349
MslI	CAYNNNNRTG	1 cut(s)	127
MspI	CCGG	2 cut(s)	34, 292
MspR9I	CCNGG	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	2 cut(s)	119, 207
NlaIII	CATG	3 cut(s)	158, 185, 210
NmeAIII	GCCGAG	1 cut(s)	302
NmuCI	GTSAC	2 cut(s)	36, 140
NsiI	ATGCAT	1 cut(s)	124
NspI	RCATGY	2 cut(s)	185, 210
PaeI	GCATGC	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	340
PfeI	GAWTC	2 cut(s)	214, 299
PinAI	ACCGGT	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	185
PspEI	GGTNACC	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	185
RsaI	GTAC	2 cut(s)	15, 282
RsaNI	GTAC	2 cut(s)	14, 281
RseI	CAYNNNNRTG	1 cut(s)	127
SaqAI	TTAA	2 cut(s)	249, 349
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	4 cut(s)	191, 234, 255, 320
SfaNI	GCATC	2 cut(s)	109, 246
SmiMI	CAYNNNNRTG	1 cut(s)	127
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
SphI	GCATGC	1 cut(s)	185
Sse9I	AATT	1 cut(s)	163
SseBI	AGGCCT	1 cut(s)	340
SspMI	CTAG	1 cut(s)	110
StuI	AGGCCT	1 cut(s)	340
StyD4I	CCNGG	1 cut(s)	185
TaaI	ACNGT	1 cut(s)	81
TaiI	ACGT	1 cut(s)	234
TaqII	GACCGA	1 cut(s)	159
TasI	AATT	1 cut(s)	163
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	2 cut(s)	214, 299
Tru1I	TTAA	2 cut(s)	249, 349
Tru9I	TTAA	2 cut(s)	249, 349
TseFI	GTSAC	2 cut(s)	36, 140
Tsp45I	GTSAC	2 cut(s)	36, 140
TspDTI	ATGAA	2 cut(s)	87, 143
TspGWI	ACGGA	1 cut(s)	346
XagI	CCTNNNNNAGG	1 cut(s)	57
XceI	RCATGY	2 cut(s)	185, 210
XspI	CTAG	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.