pycom17g09370

L-ascorbate oxidase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013817
Physical Location & Seq
Forward (+)
7140049 .. 7141466
1418 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1050 bp
ATGGCCGTGGATCCAATGGGTTCTTGTACATTTACAGTTGATCAAGGCAAGACATACAGGTTGCGGATATCGAATGTGGGGCTTACAACTTCCATCAATTTCAGAATACAGGGGCACAAGATGATGTTGGTTGAGGTGGAAGGCACCCATTCTCTTCAAAACACTTACAGTTCTCTTGACATTCATTTGGGTCAGTCCTATTCTGTATTGGTTACAGCTGATCAACCGCCGCAAGATTACTACATTGTTGTCTCTTCACGTTTCACGTCACAAGTGCTCAGTTCAACCTCCATTCTCCACTACAGCAACTCTGCAGGAAGTGTTTCTGGCCCTCCCCCCGGTGGCCCAACAACTCAGGTTGACTGGTCTCTTGAACAAGCGCGATCTCTCAGACGGAATTTGACAGCGAGTGGTCCAAGACCGAACCCACAAGGCTCTTATCATTACGGATTGATCAACACCACCCGCACGATCAGGCTCATGAGCTCTGCTCCAATTATTGATGGCAAACAGAGATATGCTGTGAACAGTGTATCGTACATTCAACCAGACACGCCACTTAAACTTGCTGACTACTTCAAGATCTCAGGGGTTTTCTCCCTTGGAAGCATCCAAGACAACCCCACTGGAGGCGGCGCTTATCTTCAGACTTCTGTCATGAATGCTGATTTCCGAGGCTTTGCTGAACTCGTGTTCGAGAATCCAGAGGATACTGTGCAGTCATGGCACATTGATGGCCATAATTTCTTTGTTGTAGGGATGGACGGTGGACAGTGGACACCTGCAAGCAGATTGCGCTACAATTTGAGAGACACTATATCTCGCTCCACTGTTCAGGTGTATCCCAGCTCATGGACTGCACTCTACGTGCCGTTGGACAATGTGGGAATGTGGAACATAAGATCTGAGAACTGGGCTCGGCAGTACTTAGGCCAGCAATTCTATTTCCGCGTCTACTCGCCTGCGAATTCATGGAGGGATGAATATCCGATCCCAAAGAATGCTCTTCTTTGTGGTCGCGCATTGGGGCGTAGAACTCGGCCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

350

Amino Acids

38.96

Weight (kDa)

9.11

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 9 - 104 3.6e-33 Multicopper oxidase
Cu-oxidase_2 PF07731 184 - 321 8.4e-31 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013817)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g42990 FvH4_6g42990
malus_domestica MD09G1110500.v1.1 MD17G1098300.v1.1
prunus_persica Prupe.3G216000_v2.0.a1
pyrus_communis pycom09g03290 pycom17g09370
rosa_chinensis RchiOBHm_Chr2g0158971
rosa_laevigata RLG00000021129
rosa_multiflora Rmu_sc0007907.1_g000005
rosa_roxburghii Rroxscaffold_2G00090830
rosa_rugosa Rorug02G0473300
rosa_samantha Rh2AG539900 Rh2BG552700 Rh2CG523200 Rh2DG562500
rosa_wichuraiana Rw2G044690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 790
Acc36I ACCTGC 1 cut(s) 790
AccB1I GGYRCC 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 852
AccI GTMKAC 1 cut(s) 954
AccII CGCG 3 cut(s) 382, 951, 1020
AciI CCGC 6 cut(s) 64, 227, 230, 466, 633, 949
AclWI GGATC 3 cut(s) 5, 18, 985
AcoI YGGCCR 2 cut(s) 3, 736
AcsI RAATTY 2 cut(s) 397, 967
AcuI CTGAAG 1 cut(s) 629
AfaI GTAC 3 cut(s) 28, 539, 926
AfiI CCNNNNNNNGG 4 cut(s) 338, 341, 629, 852
AgsI TTSAA 5 cut(s) 158, 285, 374, 545, 580
AjiI CACGTC 1 cut(s) 267
AluBI AGCT 3 cut(s) 218, 486, 849
AluI AGCT 3 cut(s) 218, 486, 849
Alw21I GWGCWC 2 cut(s) 279, 488
Alw26I GTCTC 3 cut(s) 256, 372, 804
AlwI GGATC 3 cut(s) 5, 18, 985
AoxI GGCC 6 cut(s) 3, 328, 343, 736, 931, 1040
ApoI RAATTY 2 cut(s) 397, 967
Asp700I GAANNNNTTC 1 cut(s) 322
AspLEI GCGC 4 cut(s) 382, 638, 798, 1022
AspS9I GGNCC 3 cut(s) 329, 344, 413
AsuC2I CCSGG 1 cut(s) 339
AvaII GGWCC 1 cut(s) 413
BaeGI GKGCMC 1 cut(s) 117
BalI TGGCCA 1 cut(s) 738
BamHI GGATCC 1 cut(s) 10
BanI GGYRCC 1 cut(s) 143
BanII GRGCYC 2 cut(s) 488, 919
BauI CACGAG 1 cut(s) 689
Bbv12I GWGCWC 2 cut(s) 279, 488
BccI CCATC 4 cut(s) 101, 497, 728, 754
BceAI ACGGC 1 cut(s) 856
BciVI GTATCC 2 cut(s) 703, 852
BclI TGATCA 3 cut(s) 40, 220, 453
BcnI CCSGG 1 cut(s) 339
BcoDI GTCTC 3 cut(s) 256, 372, 804
BfmI CTRYAG 2 cut(s) 301, 312
BfoI RGCGCY 1 cut(s) 639
BfuAI ACCTGC 1 cut(s) 790
BfuI GTATCC 2 cut(s) 703, 852
BglII AGATCT 2 cut(s) 582, 902
BisI GCNGC 2 cut(s) 230, 634
BlsI GCNGC 2 cut(s) 231, 635
BmcAI AGTACT 1 cut(s) 926
Bme1390I CCNGG 1 cut(s) 339
Bme18I GGWCC 1 cut(s) 413
BmgBI CACGTC 1 cut(s) 267
BmgT120I GGNCC 3 cut(s) 329, 344, 413
BmiI GGNNCC 2 cut(s) 12, 145
BmrFI CCNGG 1 cut(s) 339
BmrI ACTGGG 1 cut(s) 922
BmsI GCATC 1 cut(s) 618
BmuI ACTGGG 1 cut(s) 922
BoxI GACNNNNGTC 1 cut(s) 653
BplI GAGNNNNNCTC 2 cut(s) 475, 507
BpmI CTGGAG 1 cut(s) 648
BpuMI CCSGG 1 cut(s) 339
BsaAI YACGTR 1 cut(s) 868
BsaBI GATNNNNATC 1 cut(s) 984
BsaI GGTCTC 1 cut(s) 372
BsaJI CCNNGG 4 cut(s) 6, 337, 601, 673
Bsc4I CCNNNNNNNGG 4 cut(s) 338, 341, 629, 852
Bse1I ACTGG 3 cut(s) 368, 631, 917
Bse8I GATNNNNATC 1 cut(s) 984
BseDI CCNNGG 4 cut(s) 6, 337, 601, 673
BseGI GGATG 3 cut(s) 609, 765, 985
BseJI GATNNNNATC 1 cut(s) 984
BseLI CCNNNNNNNGG 4 cut(s) 338, 341, 629, 852
BseMII CTCAG 5 cut(s) 292, 368, 403, 600, 897
BseNI ACTGG 3 cut(s) 368, 631, 917
BseSI GKGCMC 1 cut(s) 117
BseYI CCCAGC 1 cut(s) 845
BsgI GTGCAG 2 cut(s) 737, 843
Bsh1236I CGCG 3 cut(s) 382, 951, 1020
BshFI GGCC 6 cut(s) 5, 330, 345, 738, 933, 1042
BshNI GGYRCC 1 cut(s) 143
BsiHKAI GWGCWC 2 cut(s) 279, 488
BsiSI CCGG 1 cut(s) 339
BslI CCNNNNNNNGG 4 cut(s) 338, 341, 629, 852
BsmAI GTCTC 3 cut(s) 256, 372, 804
BsmI GAATGC 2 cut(s) 667, 1006
BsnI GGCC 6 cut(s) 5, 330, 345, 738, 933, 1042
Bso31I GGTCTC 1 cut(s) 372
Bsp1286I GDGCHC 4 cut(s) 117, 279, 488, 919
Bsp1407I TGTACA 1 cut(s) 26
Bsp143I GATC 9 cut(s) 10, 40, 220, 383, 453, 471, 582, 902, 990
BspACI CCGC 6 cut(s) 64, 227, 230, 466, 633, 949
BspANI GGCC 6 cut(s) 5, 330, 345, 738, 933, 1042
BspCNI CTCAG 5 cut(s) 291, 367, 402, 599, 898
BspFNI CGCG 3 cut(s) 382, 951, 1020
BspHI TCATGA 2 cut(s) 480, 657
BspLI GGNNCC 2 cut(s) 12, 145
BspMAI CTGCAG 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 790
BspPI GGATC 3 cut(s) 5, 18, 985
BspQI GCTCTTC 1 cut(s) 1011
BspT107I GGYRCC 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 372
BsrGI TGTACA 1 cut(s) 26
BsrI ACTGG 3 cut(s) 368, 631, 917
BssECI CCNNGG 4 cut(s) 6, 337, 601, 673
BssMI GATC 9 cut(s) 10, 40, 220, 383, 453, 471, 582, 902, 990
BssSI CACGAG 1 cut(s) 689
BssT1I CCWWGG 1 cut(s) 601
Bst2BI CACGAG 1 cut(s) 689
Bst4CI ACNGT 7 cut(s) 37, 170, 530, 715, 767, 774, 832
Bst6I CTCTTC 3 cut(s) 159, 259, 1011
BstAUI TGTACA 1 cut(s) 26
BstBAI YACGTR 1 cut(s) 868
BstC8I GCNNGC 3 cut(s) 787, 935, 963
BstDEI CTNAG 6 cut(s) 278, 354, 389, 586, 906, 928
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 3 cut(s) 609, 765, 985
BstFNI CGCG 3 cut(s) 382, 951, 1020
BstH2I RGCGCY 1 cut(s) 639
BstHHI GCGC 4 cut(s) 382, 638, 798, 1022
BstKTI GATC 9 cut(s) 13, 43, 223, 386, 456, 474, 585, 905, 993
BstMAI GTCTC 3 cut(s) 256, 372, 804
BstMBI GATC 9 cut(s) 10, 40, 220, 383, 453, 471, 582, 902, 990
BstMWI GCNNNNNNNGC 2 cut(s) 724, 795
BstPAI GACNNNNGTC 1 cut(s) 653
BstSCI CCNGG 1 cut(s) 337
BstSFI CTRYAG 2 cut(s) 301, 312
BstSLI GKGCMC 1 cut(s) 117
BstUI CGCG 3 cut(s) 382, 951, 1020
BstX2I RGATCY 3 cut(s) 10, 582, 902
BstYI RGATCY 3 cut(s) 10, 582, 902
BsuI GTATCC 2 cut(s) 703, 852
BsuRI GGCC 6 cut(s) 5, 330, 345, 738, 933, 1042
BtgI CCRYGG 1 cut(s) 6
BtrI CACGTC 1 cut(s) 267
BtsCI GGATG 3 cut(s) 609, 765, 985
BtsIMutI CAGTG 4 cut(s) 535, 624, 779, 828
BveI ACCTGC 1 cut(s) 790
Cac8I GCNNGC 3 cut(s) 787, 935, 963
CciI TCATGA 2 cut(s) 480, 657
CfoI GCGC 4 cut(s) 382, 638, 798, 1022
Cfr13I GGNCC 3 cut(s) 329, 344, 413
CseI GACGC 1 cut(s) 940
Csp6I GTAC 3 cut(s) 27, 538, 925
CviAII CATG 5 cut(s) 481, 658, 723, 852, 972
CviQI GTAC 3 cut(s) 27, 538, 925
DdeI CTNAG 6 cut(s) 278, 354, 389, 586, 906, 928
DpnI GATC 9 cut(s) 12, 42, 222, 385, 455, 473, 584, 904, 992
DpnII GATC 9 cut(s) 10, 40, 220, 383, 453, 471, 582, 902, 990
EaeI YGGCCR 2 cut(s) 3, 736
Eam1104I CTCTTC 3 cut(s) 159, 259, 1011
EarI CTCTTC 3 cut(s) 159, 259, 1011
Ecl136II GAGCTC 1 cut(s) 486
Eco130I CCWWGG 1 cut(s) 601
Eco24I GRGCYC 2 cut(s) 488, 919
Eco31I GGTCTC 1 cut(s) 372
Eco32I GATATC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 413
Eco53kI GAGCTC 1 cut(s) 486
Eco57I CTGAAG 1 cut(s) 629
EcoICRI GAGCTC 1 cut(s) 486
EcoRI GAATTC 1 cut(s) 967
EcoRV GATATC 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 601
EcoT38I GRGCYC 2 cut(s) 488, 919
ErhI CCWWGG 1 cut(s) 601
FaeI CATG 5 cut(s) 484, 661, 726, 855, 975
FatI CATG 5 cut(s) 480, 657, 722, 851, 971
FauI CCCGC 1 cut(s) 473
FbaI TGATCA 3 cut(s) 40, 220, 453
FblI GTMKAC 1 cut(s) 954
Fnu4HI GCNGC 2 cut(s) 230, 634
FokI GGATG 3 cut(s) 596, 772, 992
FriOI GRGCYC 2 cut(s) 488, 919
Fsp4HI GCNGC 2 cut(s) 230, 634
GlaI GCGC 4 cut(s) 381, 637, 797, 1021
GluI GCNGC 2 cut(s) 230, 634
GsaI CCCAGC 1 cut(s) 849
GsuI CTGGAG 1 cut(s) 648
HaeII RGCGCY 1 cut(s) 639
HaeIII GGCC 6 cut(s) 5, 330, 345, 738, 933, 1042
HapII CCGG 1 cut(s) 339
HgaI GACGC 1 cut(s) 940
HhaI GCGC 4 cut(s) 382, 638, 798, 1022
Hin1II CATG 5 cut(s) 484, 661, 726, 855, 975
Hin6I GCGC 4 cut(s) 380, 636, 796, 1020
HinP1I GCGC 4 cut(s) 380, 636, 796, 1020
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 1 cut(s) 700
HpaII CCGG 1 cut(s) 339
Hpy166II GTNNAC 5 cut(s) 361, 526, 770, 777, 955
Hpy188I TCNGA 6 cut(s) 104, 392, 648, 674, 907, 990
Hpy188III TCNNGA 7 cut(s) 176, 371, 481, 580, 658, 697, 704
Hpy8I GTNNAC 5 cut(s) 361, 526, 770, 777, 955
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 7 cut(s) 37, 170, 530, 715, 767, 774, 832
HpyCH4IV ACGT 3 cut(s) 259, 266, 867
HpyCH4V TGCA 4 cut(s) 314, 718, 785, 860
HpyF10VI GCNNNNNNNGC 2 cut(s) 724, 795
HpyF3I CTNAG 6 cut(s) 278, 354, 389, 586, 906, 928
HpySE526I ACGT 3 cut(s) 259, 266, 867
Hsp92II CATG 5 cut(s) 484, 661, 726, 855, 975
HspAI GCGC 4 cut(s) 380, 636, 796, 1020
Ksp22I TGATCA 3 cut(s) 40, 220, 453
Kzo9I GATC 9 cut(s) 10, 40, 220, 383, 453, 471, 582, 902, 990
LguI GCTCTTC 1 cut(s) 1011
LmnI GCTCC 2 cut(s) 496, 830
LweI GCATC 1 cut(s) 618
MaeII ACGT 3 cut(s) 259, 266, 867
MaeIII GTNAC 2 cut(s) 211, 267
MalI GATC 9 cut(s) 12, 42, 222, 385, 455, 473, 584, 904, 992
MboI GATC 9 cut(s) 10, 40, 220, 383, 453, 471, 582, 902, 990
MboII GAAGA 4 cut(s) 146, 246, 635, 998
MflI RGATCY 3 cut(s) 10, 582, 902
MhlI GDGCHC 4 cut(s) 117, 279, 488, 919
MlsI TGGCCA 1 cut(s) 738
MluCI AATT 7 cut(s) 97, 397, 495, 742, 802, 938, 967
MluNI TGGCCA 1 cut(s) 738
MmeI TCCRAC 1 cut(s) 855
MnlI CCTC 7 cut(s) 127, 298, 342, 623, 668, 700, 969
Mox20I TGGCCA 1 cut(s) 738
MroXI GAANNNNTTC 1 cut(s) 322
MscI TGGCCA 1 cut(s) 738
MseI TTAA 2 cut(s) 561, 1048
MslI CAYNNNNRTG 1 cut(s) 732
Msp20I TGGCCA 1 cut(s) 738
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 339
Mva1269I GAATGC 2 cut(s) 667, 1006
MvnI CGCG 3 cut(s) 382, 951, 1020
MwoI GCNNNNNNNGC 2 cut(s) 724, 795
NciI CCSGG 1 cut(s) 339
NdeII GATC 9 cut(s) 10, 40, 220, 383, 453, 471, 582, 902, 990
NlaIII CATG 5 cut(s) 484, 661, 726, 855, 975
NlaIV GGNNCC 2 cut(s) 12, 145
NmeAIII GCCGAG 2 cut(s) 898, 1018
NmuCI GTSAC 1 cut(s) 267
PagI TCATGA 2 cut(s) 480, 657
PaqCI CACCTGC 1 cut(s) 790
PciSI GCTCTTC 1 cut(s) 1011
PctI GAATGC 2 cut(s) 667, 1006
PdmI GAANNNNTTC 1 cut(s) 322
PfeI GAWTC 1 cut(s) 700
PflMI CCANNNNNTGG 1 cut(s) 852
PkrI GCNGC 2 cut(s) 231, 635
Ppu21I YACGTR 1 cut(s) 868
PshAI GACNNNNGTC 1 cut(s) 653
Psp124BI GAGCTC 1 cut(s) 488
PspFI CCCAGC 1 cut(s) 845
PspN4I GGNNCC 2 cut(s) 12, 145
PspPI GGNCC 3 cut(s) 329, 344, 413
PstI CTGCAG 1 cut(s) 316
PsuI RGATCY 3 cut(s) 10, 582, 902
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 3 cut(s) 28, 539, 926
RsaNI GTAC 3 cut(s) 27, 538, 925
RseI CAYNNNNRTG 1 cut(s) 732
SacI GAGCTC 1 cut(s) 488
SapI GCTCTTC 1 cut(s) 1011
SaqAI TTAA 2 cut(s) 561, 1048
SatI GCNGC 2 cut(s) 230, 634
Sau3AI GATC 9 cut(s) 10, 40, 220, 383, 453, 471, 582, 902, 990
Sau96I GGNCC 3 cut(s) 329, 344, 413
ScaI AGTACT 1 cut(s) 926
ScrFI CCNGG 1 cut(s) 339
SduI GDGCHC 4 cut(s) 117, 279, 488, 919
SfaNI GCATC 1 cut(s) 618
SfcI CTRYAG 2 cut(s) 301, 312
SinI GGWCC 1 cut(s) 413
SmiMI CAYNNNNRTG 1 cut(s) 732
Sse9I AATT 7 cut(s) 97, 397, 495, 742, 802, 938, 967
SsiI CCGC 6 cut(s) 64, 227, 230, 466, 633, 949
SstI GAGCTC 1 cut(s) 488
StyD4I CCNGG 1 cut(s) 337
StyI CCWWGG 1 cut(s) 601
TaaI ACNGT 7 cut(s) 37, 170, 530, 715, 767, 774, 832
TaiI ACGT 3 cut(s) 262, 269, 870
TaqI TCGA 2 cut(s) 71, 696
TaqII GACCGA 1 cut(s) 436
TasI AATT 7 cut(s) 97, 397, 495, 742, 802, 938, 967
TatI WGTACW 2 cut(s) 26, 924
TauI GCSGC 2 cut(s) 232, 636
TfiI GAWTC 1 cut(s) 700
Tru1I TTAA 2 cut(s) 561, 1048
Tru9I TTAA 2 cut(s) 561, 1048
TscAI CASTG 4 cut(s) 535, 631, 779, 835
TseFI GTSAC 1 cut(s) 267
Tsp45I GTSAC 1 cut(s) 267
TspDTI ATGAA 4 cut(s) 173, 674, 960, 996
TspGWI ACGGA 2 cut(s) 409, 462
TspRI CASTG 4 cut(s) 535, 631, 779, 835
Van91I CCANNNNNTGG 1 cut(s) 852
VpaK11BI GGWCC 1 cut(s) 413
XapI RAATTY 2 cut(s) 397, 967
XmiI GTMKAC 1 cut(s) 954
XmnI GAANNNNTTC 1 cut(s) 322
ZrmI AGTACT 1 cut(s) 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.