Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007907.1

Orthogroup ID

OG0013817

Physical Location & Seq

Genomic Coordinates Forward (+)

12520 .. 13493

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007907.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgggactctacacaagtgtgtgttgtgtcttattggttgctttgcttactgtgagcttcactaatggggaagatccatataggttctacaactggaatgtcacctatggtgatatctatccccttggtgtaaaacagcaggggatattgataaatgggcaattcccagggccacagattgattctgtcaccaatgataaccttattatcagtgttttcaacagcttggatgaaccttttctcctttcttggaatggtgtgcagcagagaaggaactcatggcaagatggggtctttggcacaaattgtcccatcccaccaggacagaacttcacctatgttctccaggtcaaggatcaaattggaagttacttttactttccttcccttgccttccacaaagctgcaggaggatttggtggcatcaaaatagcaagccgacctcgtattccggtgccttttcctcctcctgctggagatttcaccattctggccggagactggttcaagcaaaatcacactgtaagtagcattgcttggaggttatgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

183

Amino Acids

20.35

Weight (kDa)

6.69

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013817)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42990 FvH4_6g42990
malus_domestica	MD09G1110500.v1.1 MD17G1098300.v1.1
prunus_persica	Prupe.3G216000_v2.0.a1
pyrus_communis	pycom09g03290 pycom17g09370
rosa_chinensis	RchiOBHm_Chr2g0158971
rosa_laevigata	RLG00000021129
rosa_multiflora	Rmu_sc0007907.1_g000005
rosa_roxburghii	Rroxscaffold_2G00090830
rosa_rugosa	Rorug02G0473300
rosa_samantha	Rh2AG539900 Rh2BG552700 Rh2CG523200 Rh2DG562500
rosa_wichuraiana	Rw2G044690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	454
AclWI	GGATC	2 cut(s)	68, 363
AcoI	YGGCCR	1 cut(s)	492
AfiI	CCNNNNNNNGG	3 cut(s)	352, 473, 501
AgsI	TTSAA	2 cut(s)	220, 508
AjnI	CCWGG	3 cut(s)	166, 319, 345
AleI	CACNNNNGTG	1 cut(s)	17
AloI	GAACNNNNNNTCC	2 cut(s)	225, 257
AluBI	AGCT	3 cut(s)	57, 225, 404
AluI	AGCT	3 cut(s)	57, 225, 404
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	2 cut(s)	68, 363
AoxI	GGCC	2 cut(s)	170, 492
ApeKI	GCWGC	2 cut(s)	262, 404
Asp700I	GAANNNNTTC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	170
AsuHPI	GGTGA	5 cut(s)	94, 122, 181, 325, 475
BanI	GGYRCC	1 cut(s)	454
BbvI	GCAGC	2 cut(s)	274, 391
BccI	CCATC	2 cut(s)	281, 320
BciT130I	CCWGG	3 cut(s)	168, 321, 347
BcoDI	GTCTC	1 cut(s)	492
BfmI	CTRYAG	1 cut(s)	405
BisI	GCNGC	2 cut(s)	263, 405
BlsI	GCNGC	2 cut(s)	264, 406
Bme1390I	CCNGG	3 cut(s)	168, 321, 347
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	456
BmrFI	CCNGG	3 cut(s)	168, 321, 347
BmsI	GCATC	1 cut(s)	432
BpmI	CTGGAG	2 cut(s)	329, 495
BsaBI	GATNNNNATC	1 cut(s)	117
BsaJI	CCNNGG	3 cut(s)	124, 166, 167
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	3 cut(s)	225, 255, 532
Bsc4I	CCNNNNNNNGG	3 cut(s)	352, 473, 501
Bse1I	ACTGG	2 cut(s)	98, 506
Bse3DI	GCAATG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	117
BseBI	CCWGG	3 cut(s)	168, 321, 347
BseDI	CCNNGG	3 cut(s)	124, 166, 167
BseGI	GGATG	2 cut(s)	235, 312
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	3 cut(s)	352, 473, 501
BseMI	GCAATG	1 cut(s)	531
BseNI	ACTGG	2 cut(s)	98, 506
BseRI	GAGGAG	1 cut(s)	456
BseXI	GCAGC	2 cut(s)	274, 391
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	2 cut(s)	172, 494
BshNI	GGYRCC	1 cut(s)	454
BsiSI	CCGG	2 cut(s)	452, 495
BslFI	GGGAC	2 cut(s)	18, 294
BslI	CCNNNNNNNGG	3 cut(s)	352, 473, 501
BsmAI	GTCTC	1 cut(s)	492
BsmFI	GGGAC	2 cut(s)	18, 294
BsnI	GGCC	2 cut(s)	172, 494
Bsp143I	GATC	2 cut(s)	73, 355
BspANI	GGCC	2 cut(s)	172, 494
BspLI	GGNNCC	1 cut(s)	456
BspMAI	CTGCAG	1 cut(s)	409
BspPI	GGATC	2 cut(s)	68, 363
BspT107I	GGYRCC	1 cut(s)	454
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	98, 506
BssECI	CCNNGG	3 cut(s)	124, 166, 167
BssMI	GATC	2 cut(s)	73, 355
BssT1I	CCWWGG	1 cut(s)	124
Bst2UI	CCWGG	3 cut(s)	168, 321, 347
Bst4CI	ACNGT	2 cut(s)	52, 523
BstC8I	GCNNGC	1 cut(s)	436
BstF5I	GGATG	2 cut(s)	235, 312
BstKTI	GATC	2 cut(s)	76, 358
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	2 cut(s)	73, 355
BstNI	CCWGG	3 cut(s)	168, 321, 347
BstSCI	CCNGG	3 cut(s)	166, 319, 345
BstSFI	CTRYAG	1 cut(s)	405
BstV1I	GCAGC	2 cut(s)	274, 391
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	172, 494
BtsCI	GGATG	2 cut(s)	235, 312
BtsIMutI	CAGTG	2 cut(s)	217, 519
Cac8I	GCNNGC	1 cut(s)	436
Cfr13I	GGNCC	1 cut(s)	170
CviAII	CATG	1 cut(s)	279
CviJI	RGCY	6 cut(s)	57, 172, 225, 404, 438, 494
CviKI_1	RGCY	6 cut(s)	57, 172, 225, 404, 438, 494
DpnI	GATC	2 cut(s)	75, 357
DpnII	GATC	2 cut(s)	73, 355
EaeI	YGGCCR	1 cut(s)	492
Eco130I	CCWWGG	1 cut(s)	124
Eco32I	GATATC	1 cut(s)	115
EcoRII	CCWGG	3 cut(s)	166, 319, 345
EcoRV	GATATC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	1 cut(s)	282
FaiI	YATR	6 cut(s)	79, 81, 108, 280, 339, 547
FaqI	GGGAC	2 cut(s)	18, 294
FatI	CATG	1 cut(s)	278
Fnu4HI	GCNGC	2 cut(s)	263, 405
FokI	GGATG	2 cut(s)	242, 299
Fsp4HI	GCNGC	2 cut(s)	263, 405
GluI	GCNGC	2 cut(s)	263, 405
GsuI	CTGGAG	2 cut(s)	329, 495
HaeIII	GGCC	2 cut(s)	172, 494
HapII	CCGG	2 cut(s)	452, 495
Hin1II	CATG	1 cut(s)	282
HinfI	GANTC	2 cut(s)	6, 182
HpaII	CCGG	2 cut(s)	452, 495
HphI	GGTGA	5 cut(s)	94, 122, 181, 325, 475
HpyAV	CCTTC	3 cut(s)	264, 393, 403
HpyCH4III	ACNGT	2 cut(s)	52, 523
HpyCH4V	TGCA	2 cut(s)	262, 407
Hsp92II	CATG	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	73, 355
Lsp1109I	GCAGC	2 cut(s)	274, 391
LweI	GCATC	1 cut(s)	432
MaeIII	GTNAC	3 cut(s)	100, 187, 368
MalI	GATC	2 cut(s)	75, 357
MboI	GATC	2 cut(s)	73, 355
MboII	GAAGA	1 cut(s)	83
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	3 cut(s)	161, 304, 360
MnlI	CCTC	5 cut(s)	404, 453, 474, 477, 534
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	1 cut(s)	550
MslI	CAYNNNNRTG	1 cut(s)	17
MspI	CCGG	2 cut(s)	452, 495
MspR9I	CCNGG	3 cut(s)	168, 321, 347
MvaI	CCWGG	3 cut(s)	168, 321, 347
NdeII	GATC	2 cut(s)	73, 355
NlaIII	CATG	1 cut(s)	282
NlaIV	GGNNCC	1 cut(s)	456
NmuCI	GTSAC	2 cut(s)	100, 187
OliI	CACNNNNGTG	1 cut(s)	17
PasI	CCCWGGG	1 cut(s)	167
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	264, 406
Psp6I	CCWGG	3 cut(s)	166, 319, 345
PspGI	CCWGG	3 cut(s)	166, 319, 345
PspN4I	GGNNCC	1 cut(s)	456
PspPI	GGNCC	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	550
SatI	GCNGC	2 cut(s)	263, 405
Sau3AI	GATC	2 cut(s)	73, 355
Sau96I	GGNCC	1 cut(s)	170
ScrFI	CCNGG	3 cut(s)	168, 321, 347
SfaNI	GCATC	1 cut(s)	432
SfcI	CTRYAG	1 cut(s)	405
SmiMI	CAYNNNNRTG	1 cut(s)	17
Sse9I	AATT	3 cut(s)	161, 304, 360
StyD4I	CCNGG	3 cut(s)	166, 319, 345
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	2 cut(s)	52, 523
TasI	AATT	3 cut(s)	161, 304, 360
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	550
Tru9I	TTAA	1 cut(s)	550
TscAI	CASTG	2 cut(s)	217, 526
TseFI	GTSAC	2 cut(s)	100, 187
TseI	GCWGC	2 cut(s)	262, 404
Tsp45I	GTSAC	2 cut(s)	100, 187
TspDTI	ATGAA	1 cut(s)	246
TspRI	CASTG	2 cut(s)	217, 526
XmnI	GAANNNNTTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.