Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013817

Physical Location & Seq

Genomic Coordinates Reverse (-)

60489379 .. 60491105

Gene Structure 1727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0473300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTGTTTCGATGAACACATTATATATAGTATACTCTGTTTCAGTCAATGTCCATTACATACTCTGTCGGCATCAGTTTCTTTTCCCCAAGTTTCTACGGCTATCATGATATCTTGTCATACTGCTGCCACAGAAAGATTGCTTCCGCCCTCTAAGTCTCAGTCCCACTTCAAAAGATTAAAAAGATCGCCGGACACACCATGCCAAAGCTTGTCAAAGACTGATATTCATGATCTCCCCGACTCTGTTTTGGTTGAAATCCTCTGTCGACTTCCTCACAACAAATTTGTTTTTCAGTGCCAATGTGTGTGCAAACGTTGGTTCTCTCTCATCTCCGATGAAAAGTTCCACTGCCGTTTTCTATGGCTCCAAAGTCATAACCCAAAATCAACTCCGACGGAAAGTACTCTCATCTTCAGGGATGCAAAGAGCAAGAGGAAATATTTTATATTGCCGGAGTTCGAGCTTCCGATGTTCAGAACACGCGACTTCTCTTTGCCTCGTTTCGGAGCTACAGACTACATAGAAACAAGTGATGATGGGCCGATTGTGGTAGGGGCATGCAATGACTTAGTTTTGTGTTGCGGAGATATAAGTTATCAATGTGATTACTACATCTGCAATCCATACACCAAGCAATATGTTCGTCTTCCTCCCACCCCTCGGTGCTACAGAGAAGTAAGAGTGGGATTCATCTGCGATCAGTATTACAAGGAAGATGTTGATGATCAGAAAAAAGAAGGTATTACCAGTAGTGGTATCATCCAGGTTGATGTTGATTTTAGATACGCCATAGTGCGAATATGTCCTCGCTCCCCATTCAAATTCAACATTGAGATCTTCTCTTCTGAGACTGGTAAATGGACAGAATCGGTTATACAGAGCCCACAAGATGGCTTCTTGTTGGATAGTTTGGAAGATAATGGAGGCATTGAGCTCATAATGGAATCTTGTATTGGTGGAGTGTTGATGACCACTTTATTATTGGGTTGGATCCCTACTCCAAAAATCACGAATGCCCTTGTTTTCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

344

Amino Acids

39.35

Weight (kDa)

6.08

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	76 - 118	9.5e-08	F-box domain
F-box-like	PF12937	76 - 116	2.1e-07	F-box-like
b-prop_At3g26010-like	PF24750	183 - 298	5.2e-06	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013817)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42990 FvH4_6g42990
malus_domestica	MD09G1110500.v1.1 MD17G1098300.v1.1
prunus_persica	Prupe.3G216000_v2.0.a1
pyrus_communis	pycom09g03290 pycom17g09370
rosa_chinensis	RchiOBHm_Chr2g0158971
rosa_laevigata	RLG00000021129
rosa_multiflora	Rmu_sc0007907.1_g000005
rosa_roxburghii	Rroxscaffold_2G00090830
rosa_rugosa	Rorug02G0473300
rosa_samantha	Rh2AG539900 Rh2BG552700 Rh2CG523200 Rh2DG562500
rosa_wichuraiana	Rw2G044690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	893
AccI	GTMKAC	2 cut(s)	31, 268
AccII	CGCG	1 cut(s)	486
AciI	CCGC	2 cut(s)	146, 585
AclI	AACGTT	1 cut(s)	316
AclWI	GGATC	2 cut(s)	988, 1001
AcsI	RAATTY	2 cut(s)	284, 824
AcuI	CTGAAG	1 cut(s)	400
AfaI	GTAC	1 cut(s)	406
AfiI	CCNNNNNNNGG	3 cut(s)	506, 663, 893
AgsI	TTSAA	4 cut(s)	172, 257, 823, 829
AjnI	CCWGG	1 cut(s)	765
AjuI	GAANNNNNNNTTGG	2 cut(s)	939, 971
AluBI	AGCT	4 cut(s)	210, 466, 512, 937
AluI	AGCT	4 cut(s)	210, 466, 512, 937
Alw21I	GWGCWC	1 cut(s)	939
Alw26I	GTCTC	2 cut(s)	162, 845
AlwI	GGATC	2 cut(s)	988, 1001
AoxI	GGCC	1 cut(s)	542
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	2 cut(s)	284, 824
AspS9I	GGNCC	1 cut(s)	542
BamHI	GGATCC	1 cut(s)	993
BanII	GRGCYC	2 cut(s)	887, 939
BbsI	GAAGAC	1 cut(s)	641
Bbv12I	GWGCWC	1 cut(s)	939
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	2 cut(s)	533, 887
BceAI	ACGGC	2 cut(s)	114, 339
BcgI	CGANNNNNNTGC	2 cut(s)	626, 660
BciT130I	CCWGG	1 cut(s)	767
BclI	TGATCA	1 cut(s)	727
BcoDI	GTCTC	2 cut(s)	162, 845
BfmI	CTRYAG	2 cut(s)	513, 670
BglII	AGATCT	1 cut(s)	837
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
BmcAI	AGTACT	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	767
BmgT120I	GGNCC	1 cut(s)	542
BmiI	GGNNCC	2 cut(s)	368, 995
BmrFI	CCNGG	1 cut(s)	767
BmsI	GCATC	2 cut(s)	80, 412
BpiI	GAAGAC	1 cut(s)	641
BplI	GAGNNNNNCTC	2 cut(s)	827, 859
BsaJI	CCNNGG	1 cut(s)	662
Bsc4I	CCNNNNNNNGG	3 cut(s)	506, 663, 893
Bse1I	ACTGG	2 cut(s)	750, 859
Bse3DI	GCAATG	1 cut(s)	571
BseBI	CCWGG	1 cut(s)	767
BseDI	CCNNGG	1 cut(s)	662
BseGI	GGATG	2 cut(s)	427, 762
BseLI	CCNNNNNNNGG	3 cut(s)	506, 663, 893
BseMI	GCAATG	1 cut(s)	571
BseMII	CTCAG	2 cut(s)	173, 840
BseNI	ACTGG	2 cut(s)	750, 859
BseXI	GCAGC	1 cut(s)	112
Bsh1236I	CGCG	1 cut(s)	486
BshFI	GGCC	1 cut(s)	544
BsiHKAI	GWGCWC	1 cut(s)	939
BsiSI	CCGG	2 cut(s)	191, 455
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	3 cut(s)	506, 663, 893
BsmAI	GTCTC	2 cut(s)	162, 845
BsmFI	GGGAC	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	1021
BsnI	GGCC	1 cut(s)	544
Bsp1286I	GDGCHC	2 cut(s)	887, 939
Bsp143I	GATC	6 cut(s)	185, 232, 700, 727, 837, 993
BspACI	CCGC	2 cut(s)	146, 585
BspANI	GGCC	1 cut(s)	544
BspCNI	CTCAG	2 cut(s)	172, 841
BspFNI	CGCG	1 cut(s)	486
BspHI	TCATGA	2 cut(s)	105, 229
BspLI	GGNNCC	2 cut(s)	368, 995
BspPI	GGATC	2 cut(s)	988, 1001
BsrDI	GCAATG	1 cut(s)	571
BsrI	ACTGG	2 cut(s)	750, 859
BssECI	CCNNGG	1 cut(s)	662
BssMI	GATC	6 cut(s)	185, 232, 700, 727, 837, 993
BssNAI	GTATAC	1 cut(s)	32
Bst1107I	GTATAC	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	767
Bst6I	CTCTTC	1 cut(s)	850
BstC8I	GCNNGC	1 cut(s)	562
BstDEI	CTNAG	4 cut(s)	153, 159, 571, 849
BstF5I	GGATG	2 cut(s)	427, 762
BstFNI	CGCG	1 cut(s)	486
BstKTI	GATC	6 cut(s)	188, 235, 703, 730, 840, 996
BstMAI	GTCTC	2 cut(s)	162, 845
BstMBI	GATC	6 cut(s)	185, 232, 700, 727, 837, 993
BstNI	CCWGG	1 cut(s)	767
BstNSI	RCATGY	1 cut(s)	564
BstSCI	CCNGG	1 cut(s)	765
BstSFI	CTRYAG	2 cut(s)	513, 670
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	641
BstX2I	RGATCY	2 cut(s)	837, 993
BstYI	RGATCY	2 cut(s)	837, 993
BstZ17I	GTATAC	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	544
BtsCI	GGATG	2 cut(s)	427, 762
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	2 cut(s)	302, 349
Cac8I	GCNNGC	1 cut(s)	562
CciI	TCATGA	2 cut(s)	105, 229
Cfr13I	GGNCC	1 cut(s)	542
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	4 cut(s)	106, 201, 230, 561
CviJI	RGCY	9 cut(s)	101, 210, 367, 466, 512, 544, 885, 897, 937
CviKI_1	RGCY	9 cut(s)	101, 210, 367, 466, 512, 544, 885, 897, 937
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	4 cut(s)	153, 159, 571, 849
DpnI	GATC	6 cut(s)	187, 234, 702, 729, 839, 995
DpnII	GATC	6 cut(s)	185, 232, 700, 727, 837, 993
Eam1104I	CTCTTC	1 cut(s)	850
EarI	CTCTTC	1 cut(s)	850
EciI	GGCGGA	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	937
Eco24I	GRGCYC	2 cut(s)	887, 939
Eco32I	GATATC	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	937
Eco57I	CTGAAG	1 cut(s)	400
EcoICRI	GAGCTC	1 cut(s)	937
EcoRII	CCWGG	1 cut(s)	765
EcoRV	GATATC	1 cut(s)	111
EcoT38I	GRGCYC	2 cut(s)	887, 939
FaeI	CATG	4 cut(s)	109, 204, 233, 564
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	4 cut(s)	105, 200, 229, 560
FbaI	TGATCA	1 cut(s)	727
FblI	GTMKAC	2 cut(s)	31, 268
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	2 cut(s)	434, 749
FriOI	GRGCYC	2 cut(s)	887, 939
Fsp4HI	GCNGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	544
HapII	CCGG	2 cut(s)	191, 455
Hin1II	CATG	4 cut(s)	109, 204, 233, 564
HincII	GTYRAC	1 cut(s)	269
HindII	GTYRAC	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	4 cut(s)	242, 690, 869, 947
HpaII	CCGG	2 cut(s)	191, 455
Hpy166II	GTNNAC	2 cut(s)	32, 269
Hpy188I	TCNGA	7 cut(s)	337, 396, 471, 479, 509, 732, 850
Hpy188III	TCNNGA	3 cut(s)	106, 230, 1012
Hpy8I	GTNNAC	2 cut(s)	32, 269
Hpy99I	CGWCG	1 cut(s)	400
HpyAV	CCTTC	1 cut(s)	734
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	4 cut(s)	312, 425, 564, 621
HpyF3I	CTNAG	4 cut(s)	153, 159, 571, 849
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	4 cut(s)	109, 204, 233, 564
Ksp22I	TGATCA	1 cut(s)	727
Kzo9I	GATC	6 cut(s)	185, 232, 700, 727, 837, 993
LmnI	GCTCC	3 cut(s)	372, 509, 818
LpnPI	CCDG	7 cut(s)	204, 403, 468, 752, 763, 779, 840
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	2 cut(s)	80, 412
MaeII	ACGT	1 cut(s)	316
MalI	GATC	6 cut(s)	187, 234, 702, 729, 839, 995
MboI	GATC	6 cut(s)	185, 232, 700, 727, 837, 993
MboII	GAAGA	6 cut(s)	406, 641, 728, 832, 837, 929
MflI	RGATCY	2 cut(s)	837, 993
MhlI	GDGCHC	2 cut(s)	887, 939
MluCI	AATT	2 cut(s)	284, 824
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	3 cut(s)	419, 885, 971
MnlI	CCTC	9 cut(s)	160, 272, 285, 429, 510, 663, 672, 819, 920
MseI	TTAA	1 cut(s)	179
MspI	CCGG	2 cut(s)	191, 455
MspR9I	CCNGG	1 cut(s)	767
Mva1269I	GAATGC	1 cut(s)	1021
MvaI	CCWGG	1 cut(s)	767
MvnI	CGCG	1 cut(s)	486
NdeII	GATC	6 cut(s)	185, 232, 700, 727, 837, 993
NlaIII	CATG	4 cut(s)	109, 204, 233, 564
NlaIV	GGNNCC	2 cut(s)	368, 995
NspI	RCATGY	1 cut(s)	564
PaeI	GCATGC	1 cut(s)	564
PagI	TCATGA	2 cut(s)	105, 229
PctI	GAATGC	1 cut(s)	1021
PfeI	GAWTC	3 cut(s)	690, 869, 947
PflMI	CCANNNNNTGG	1 cut(s)	893
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Psp124BI	GAGCTC	1 cut(s)	939
Psp1406I	AACGTT	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	765
PspGI	CCWGG	1 cut(s)	765
PspN4I	GGNNCC	2 cut(s)	368, 995
PspPI	GGNCC	1 cut(s)	542
PsuI	RGATCY	2 cut(s)	837, 993
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
SacI	GAGCTC	1 cut(s)	939
SalI	GTCGAC	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	6 cut(s)	185, 232, 700, 727, 837, 993
Sau96I	GGNCC	1 cut(s)	542
ScaI	AGTACT	1 cut(s)	406
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	767
SduI	GDGCHC	2 cut(s)	887, 939
SetI	ASST	7 cut(s)	212, 319, 468, 514, 745, 771, 939
SfaNI	GCATC	2 cut(s)	80, 412
SfcI	CTRYAG	2 cut(s)	513, 670
SphI	GCATGC	1 cut(s)	564
Sse9I	AATT	2 cut(s)	284, 824
SsiI	CCGC	2 cut(s)	146, 585
SspI	AATATT	1 cut(s)	443
SstI	GAGCTC	1 cut(s)	939
StyD4I	CCNGG	1 cut(s)	765
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	3 cut(s)	9, 268, 462
TasI	AATT	2 cut(s)	284, 824
TatI	WGTACW	1 cut(s)	404
TfiI	GAWTC	3 cut(s)	690, 869, 947
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	2 cut(s)	302, 356
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	4 cut(s)	27, 218, 354, 682
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	2 cut(s)	302, 356
Van91I	CCANNNNNTGG	1 cut(s)	893
XapI	RAATTY	2 cut(s)	284, 824
XceI	RCATGY	1 cut(s)	564
XcmI	CCANNNNNNNNNTGG	1 cut(s)	982
XmiI	GTMKAC	2 cut(s)	31, 268
ZrmI	AGTACT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.