Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008959

Physical Location & Seq

Genomic Coordinates Reverse (-)

7897906 .. 7900440

Gene Structure 2535 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGTCTGCGTTTGAAGGAGTTATTGTTTCTGACACATGGCTGCAGAGCCAATTCACTCAAGTCGAGCTTCGCACCCTCAAATCGAAATTTCTTTCGATAAGGAATCAGTCTGGTCGAGTCACATTGGGAGATTTGCCGCCTGTTTTTGTGAAATTGAAGGCTTTCAGTGAAATGTTTAATGAAGGTGAGATTAAATCAATCTTATTGGAGTCGGGCAAGGACACTGGCGAAGATACTGATTTTGAGTCCTATCTTCGGGCACATTTGAATTTGCAAGCGCGTGCAAATGCAAAATCTGGTGGTTCAAAACAATCTTCCTTTCTCAAGGCAACCACAACAACGGTTCACCACGCAATTAATACTTCTGAGAAGTCTTCTTATGTTGCCCACATTAATGGCTACCTGGCAGAAGATCCGTTCTTGAAGAAGTATCTTCCTTTGGATCCATCTACAAATGCTCTATTTGATCTTGCAAAAGATGGAGTACTACTCTGTAAGCTTATCAATATAGCTGTTCCTGGGACTATAGATGAGCGAGCTATCAACACTAAAGCAGTCCTTAATCCGTGGGAGAGGAATGAGAACCATACCCTTTGTCTTAATTCTGCAAAGGCTATCGGCTGTACTGTAGTTAATATTGGCACACAGGACTTGGTTGAAGCAAGACCCCATCTTGTACTTGGCTTGATTTCTCAAATAATCAAGATTCAACTGTTAGCTGATCTCAATCTGAAGAAAACTCCACAACTCGTGGAATTGGTGGATGACAGCCAGGATGTAGAGGAGCTCTTGGGTCTGCCACCCGATAAGGTTCTACTGAAATGGATGAATTTTCATCTGAAGAAAGCTGGCTACGAAAAGCAAGTCACAAACTTTTCTTCTGATGTAAAGGATGGAGAGGCTTATGCTTACCTGCTTAATGCTCTTGCACCAGAGCACTCAGGCCCCGCTGCCTTGGATATGAAAGATCCTACAGCAAGAGCAAACCTGGTTCTTGAGCAAGCAGAGAAATTGGATTGCAAAAGATACCTTACCCCGAAAGACATTGTTGAGGGCTCACCAAATCTTAACCTTGCATTTGTTGCACAAATTTTCCAGCACAGAAATGGCCTGTCTGCTGATAGTAAAAAAATGTCCTTTGCTGAGATGATGACAGATGATGCTGAAACTTCTCGAGAAGAGAGATGCTTCCGGCTGTGGATTAACAGTCTTGGAACTGCTACCTATGTCAATAATCTTTTCGAAGATGTCAGAAATGGATGGGTTCTTTTAGAAGTGCTTGACAAAATTTCTTCAGGATCGATCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015629 GO:0016043 GO:0016049 GO:0022414 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030312 GO:0032432 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051015 GO:0051017 GO:0051639 GO:0051704 GO:0051764 GO:0060560 GO:0061572 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

437

Amino Acids

48.36

Weight (kDa)

5.6

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CH	PF00307	152 - 235	1.4e-15	Calponin homology (CH) domain
CH	PF00307	268 - 368	3.7e-23	Calponin homology (CH) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04750 AT5G35700
fragaria_vesca	FvH4_6g41540 FvH4_6g41540
malus_domestica	MD09G1119000.v1.1 MD17G1109900.v1.1
prunus_persica	Prupe.3G205200_v2.0.a1
pyrus_communis	pycom09g04390 pycom17g10220
rosa_chinensis	RchiOBHm_Chr2g0157211
rosa_laevigata	RLG00000020972
rosa_multiflora	Rmu_sc0006282.1_g000007 Rmu_sc0039256.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092410
rosa_rugosa	Rorug02G0458400 Rorug02G0458500
rosa_samantha	Rh2AG523900 Rh2BG538300 Rh2CG508700 Rh2DG547200
rosa_wichuraiana	Rw2G043330 Rw2G043390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	921
AccII	CGCG	1 cut(s)	280
AciI	CCGC	2 cut(s)	137, 948
AclWI	GGATC	5 cut(s)	407, 437, 450, 962, 1306
AcsI	RAATTY	5 cut(s)	86, 268, 829, 1089, 1287
AcuI	CTGAAG	3 cut(s)	752, 860, 1278
AfaI	GTAC	3 cut(s)	486, 625, 678
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	7 cut(s)	14, 157, 268, 306, 424, 659, 710
AjnI	CCWGG	4 cut(s)	402, 517, 771, 987
AluBI	AGCT	7 cut(s)	67, 499, 512, 539, 719, 787, 848
AluI	AGCT	7 cut(s)	67, 499, 512, 539, 719, 787, 848
Alw21I	GWGCWC	2 cut(s)	789, 939
AlwI	GGATC	5 cut(s)	407, 437, 450, 962, 1306
Ama87I	CYCGRG	1 cut(s)	1173
AoxI	GGCC	2 cut(s)	943, 1108
ApeKI	GCWGC	2 cut(s)	40, 950
ApoI	RAATTY	5 cut(s)	86, 268, 829, 1089, 1287
ArsI	GACNNNNNNTTYG	2 cut(s)	849, 881
AseI	ATTAAT	2 cut(s)	357, 393
Asp700I	GAANNNNTTC	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	1 cut(s)	944
AsuHPI	GGTGA	3 cut(s)	197, 338, 1050
AsuII	TTCGAA	1 cut(s)	1242
AvaI	CYCGRG	1 cut(s)	1173
BaeGI	GKGCMC	1 cut(s)	262
BamHI	GGATCC	1 cut(s)	442
BanII	GRGCYC	2 cut(s)	789, 1058
BauI	CACGAG	1 cut(s)	749
BbsI	GAAGAC	1 cut(s)	366
Bbv12I	GWGCWC	2 cut(s)	789, 939
BbvI	GCAGC	2 cut(s)	27, 937
BccI	CCATC	5 cut(s)	454, 473, 678, 887, 1254
BciT130I	CCWGG	4 cut(s)	404, 519, 773, 989
BfmI	CTRYAG	4 cut(s)	41, 525, 627, 972
BfuAI	ACCTGC	1 cut(s)	921
BisI	GCNGC	3 cut(s)	41, 137, 951
BlsI	GCNGC	3 cut(s)	42, 138, 952
BmcAI	AGTACT	1 cut(s)	486
Bme1390I	CCNGG	4 cut(s)	404, 519, 773, 989
BmeT110I	CYCGRG	1 cut(s)	1173
BmgT120I	GGNCC	1 cut(s)	944
BmiI	GGNNCC	2 cut(s)	444, 946
BmrFI	CCNGG	4 cut(s)	404, 519, 773, 989
BmsI	GCATC	2 cut(s)	1150, 1175
BpiI	GAAGAC	1 cut(s)	366
BplI	GAGNNNNNCTC	2 cut(s)	474, 506
Bpu14I	TTCGAA	1 cut(s)	1242
BpuEI	CTTGAG	3 cut(s)	42, 308, 1016
Bsa29I	ATCGAT	1 cut(s)	1301
BsaBI	GATNNNNATC	1 cut(s)	726
BsaJI	CCNNGG	3 cut(s)	518, 566, 954
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	726
BseBI	CCWGG	4 cut(s)	404, 519, 773, 989
BseCI	ATCGAT	1 cut(s)	1301
BseDI	CCNNGG	3 cut(s)	518, 566, 954
BseGI	GGATG	5 cut(s)	769, 781, 831, 898, 1265
BseJI	GATNNNNATC	1 cut(s)	726
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	3 cut(s)	357, 954, 1134
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	797
BseSI	GKGCMC	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	27, 937
Bsh1236I	CGCG	1 cut(s)	280
BshFI	GGCC	2 cut(s)	945, 1110
BshVI	ATCGAT	1 cut(s)	1301
BsiHKAI	GWGCWC	2 cut(s)	789, 939
BsiHKCI	CYCGRG	1 cut(s)	1173
BsiSI	CCGG	1 cut(s)	1192
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	535
BsnI	GGCC	2 cut(s)	945, 1110
BsoBI	CYCGRG	1 cut(s)	1173
Bsp119I	TTCGAA	1 cut(s)	1242
Bsp1286I	GDGCHC	4 cut(s)	262, 789, 939, 1058
Bsp143I	GATC	7 cut(s)	412, 442, 466, 721, 967, 1298, 1302
BspACI	CCGC	2 cut(s)	137, 948
BspANI	GGCC	2 cut(s)	945, 1110
BspCNI	CTCAG	3 cut(s)	358, 953, 1135
BspDI	ATCGAT	1 cut(s)	1301
BspFNI	CGCG	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	444, 946
BspMAI	CTGCAG	1 cut(s)	45
BspMI	ACCTGC	1 cut(s)	921
BspPI	GGATC	5 cut(s)	407, 437, 450, 962, 1306
BspT104I	TTCGAA	1 cut(s)	1242
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	3 cut(s)	518, 566, 954
BssMI	GATC	7 cut(s)	412, 442, 466, 721, 967, 1298, 1302
BssSI	CACGAG	1 cut(s)	749
BssT1I	CCWWGG	1 cut(s)	954
Bst2BI	CACGAG	1 cut(s)	749
Bst2UI	CCWGG	4 cut(s)	404, 519, 773, 989
Bst4CI	ACNGT	4 cut(s)	343, 628, 714, 1208
Bst6I	CTCTTC	1 cut(s)	1173
BstAPI	GCANNNNNTGC	1 cut(s)	1082
BstBI	TTCGAA	1 cut(s)	1242
BstC8I	GCNNGC	5 cut(s)	276, 282, 537, 850, 1002
BstDEI	CTNAG	3 cut(s)	366, 940, 1143
BstDSI	CCRYGG	1 cut(s)	566
BstF5I	GGATG	5 cut(s)	769, 781, 831, 898, 1265
BstFNI	CGCG	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	7 cut(s)	415, 445, 469, 724, 970, 1301, 1305
BstMBI	GATC	7 cut(s)	412, 442, 466, 721, 967, 1298, 1302
BstMWI	GCNNNNNNNGC	1 cut(s)	1082
BstNI	CCWGG	4 cut(s)	404, 519, 773, 989
BstSCI	CCNGG	4 cut(s)	402, 517, 771, 987
BstSFI	CTRYAG	4 cut(s)	41, 525, 627, 972
BstSLI	GKGCMC	1 cut(s)	262
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	2 cut(s)	27, 937
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	3 cut(s)	412, 442, 967
BstXI	CCANNNNNNTGG	1 cut(s)	395
BstYI	RGATCY	3 cut(s)	412, 442, 967
Bsu15I	ATCGAT	1 cut(s)	1301
BsuRI	GGCC	2 cut(s)	945, 1110
BsuTUI	ATCGAT	1 cut(s)	1301
BtgI	CCRYGG	1 cut(s)	566
BtsCI	GGATG	5 cut(s)	769, 781, 831, 898, 1265
BtsIMutI	CAGTG	2 cut(s)	172, 222
BveI	ACCTGC	1 cut(s)	921
Cac8I	GCNNGC	5 cut(s)	276, 282, 537, 850, 1002
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	944
ClaI	ATCGAT	1 cut(s)	1301
CsiI	ACCWGGT	1 cut(s)	987
Csp6I	GTAC	3 cut(s)	485, 624, 677
CviAII	CATG	1 cut(s)	36
CviQI	GTAC	3 cut(s)	485, 624, 677
DdeI	CTNAG	3 cut(s)	366, 940, 1143
DpnI	GATC	7 cut(s)	414, 444, 468, 723, 969, 1300, 1304
DpnII	GATC	7 cut(s)	412, 442, 466, 721, 967, 1298, 1302
Eam1104I	CTCTTC	1 cut(s)	1173
EarI	CTCTTC	1 cut(s)	1173
Ecl136II	GAGCTC	1 cut(s)	787
Eco130I	CCWWGG	1 cut(s)	954
Eco24I	GRGCYC	2 cut(s)	789, 1058
Eco53kI	GAGCTC	1 cut(s)	787
Eco57I	CTGAAG	3 cut(s)	752, 860, 1278
Eco88I	CYCGRG	1 cut(s)	1173
EcoICRI	GAGCTC	1 cut(s)	787
EcoO109I	RGGNCCY	1 cut(s)	944
EcoRII	CCWGG	4 cut(s)	402, 517, 771, 987
EcoT14I	CCWWGG	1 cut(s)	954
EcoT38I	GRGCYC	2 cut(s)	789, 1058
ErhI	CCWWGG	1 cut(s)	954
FaeI	CATG	1 cut(s)	39
FaiI	YATR	8 cut(s)	37, 381, 509, 527, 588, 906, 962, 1227
FalI	AAGNNNNNCTT	4 cut(s)	51, 83, 543, 575
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	1 cut(s)	35
FauI	CCCGC	1 cut(s)	955
Fnu4HI	GCNGC	3 cut(s)	41, 137, 951
FokI	GGATG	5 cut(s)	776, 788, 838, 905, 1272
FriOI	GRGCYC	2 cut(s)	789, 1058
Fsp4HI	GCNGC	3 cut(s)	41, 137, 951
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	3 cut(s)	41, 137, 951
HaeIII	GGCC	2 cut(s)	945, 1110
HapII	CCGG	1 cut(s)	1192
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	1 cut(s)	39
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	5 cut(s)	103, 117, 209, 245, 706
HpaII	CCGG	1 cut(s)	1192
HphI	GGTGA	3 cut(s)	197, 338, 1050
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	6 cut(s)	31, 367, 732, 840, 883, 1253
Hpy188III	TCNNGA	6 cut(s)	421, 703, 995, 1173, 1175, 1296
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	3 cut(s)	8, 151, 176
HpyCH4III	ACNGT	4 cut(s)	343, 628, 714, 1208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1082
HpyF3I	CTNAG	3 cut(s)	366, 940, 1143
Hsp92II	CATG	1 cut(s)	39
HspAI	GCGC	1 cut(s)	278
Kzo9I	GATC	7 cut(s)	412, 442, 466, 721, 967, 1298, 1302
LmnI	GCTCC	1 cut(s)	784
Lsp1109I	GCAGC	2 cut(s)	27, 937
LweI	GCATC	2 cut(s)	1150, 1175
MabI	ACCWGGT	1 cut(s)	987
MaeIII	GTNAC	2 cut(s)	118, 865
MalI	GATC	7 cut(s)	414, 444, 468, 723, 969, 1300, 1304
MboI	GATC	7 cut(s)	412, 442, 466, 721, 967, 1298, 1302
MflI	RGATCY	3 cut(s)	412, 442, 967
MhlI	GDGCHC	4 cut(s)	262, 789, 939, 1058
MlyI	GAGTC	3 cut(s)	126, 218, 254
MnlI	CCTC	5 cut(s)	86, 567, 775, 892, 1045
MroXI	GAANNNNTTC	1 cut(s)	161
MslI	CAYNNNNRTG	2 cut(s)	393, 1104
MspA1I	CMGCKG	1 cut(s)	950
MspI	CCGG	1 cut(s)	1192
MspR9I	CCNGG	4 cut(s)	404, 519, 773, 989
MvaI	CCWGG	4 cut(s)	404, 519, 773, 989
MvnI	CGCG	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	1082
NdeII	GATC	7 cut(s)	412, 442, 466, 721, 967, 1298, 1302
NlaIII	CATG	1 cut(s)	39
NlaIV	GGNNCC	2 cut(s)	444, 946
NmuCI	GTSAC	2 cut(s)	118, 865
NspV	TTCGAA	1 cut(s)	1242
PaeR7I	CTCGAG	1 cut(s)	1173
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	103, 706
PkrI	GCNGC	3 cut(s)	42, 138, 952
PleI	GAGTC	3 cut(s)	125, 217, 253
PpsI	GAGTC	3 cut(s)	125, 217, 253
PshBI	ATTAAT	2 cut(s)	357, 393
Psp124BI	GAGCTC	1 cut(s)	789
Psp6I	CCWGG	4 cut(s)	402, 517, 771, 987
PspGI	CCWGG	4 cut(s)	402, 517, 771, 987
PspN4I	GGNNCC	2 cut(s)	444, 946
PspPI	GGNCC	1 cut(s)	944
PstI	CTGCAG	1 cut(s)	45
PsuI	RGATCY	3 cut(s)	412, 442, 967
RsaI	GTAC	3 cut(s)	486, 625, 678
RsaNI	GTAC	3 cut(s)	485, 624, 677
RseI	CAYNNNNRTG	2 cut(s)	393, 1104
SacI	GAGCTC	1 cut(s)	789
SatI	GCNGC	3 cut(s)	41, 137, 951
Sau3AI	GATC	7 cut(s)	412, 442, 466, 721, 967, 1298, 1302
Sau96I	GGNCC	1 cut(s)	944
ScaI	AGTACT	1 cut(s)	486
SchI	GAGTC	3 cut(s)	126, 218, 254
ScrFI	CCNGG	4 cut(s)	404, 519, 773, 989
SduI	GDGCHC	4 cut(s)	262, 789, 939, 1058
SexAI	ACCWGGT	1 cut(s)	987
SfaNI	GCATC	2 cut(s)	1150, 1175
SfcI	CTRYAG	4 cut(s)	41, 525, 627, 972
Sfr274I	CTCGAG	1 cut(s)	1173
SfuI	TTCGAA	1 cut(s)	1242
SlaI	CTCGAG	1 cut(s)	1173
SmiMI	CAYNNNNRTG	2 cut(s)	393, 1104
SmlI	CTYRAG	4 cut(s)	57, 323, 995, 1173
SmoI	CTYRAG	4 cut(s)	57, 323, 995, 1173
SsiI	CCGC	2 cut(s)	137, 948
SspI	AATATT	1 cut(s)	637
SstI	GAGCTC	1 cut(s)	789
StyD4I	CCNGG	4 cut(s)	402, 517, 771, 987
StyI	CCWWGG	1 cut(s)	954
TaaI	ACNGT	4 cut(s)	343, 628, 714, 1208
TaqI	TCGA	7 cut(s)	63, 83, 95, 115, 1174, 1242, 1301
TatI	WGTACW	3 cut(s)	484, 623, 676
TauI	GCSGC	1 cut(s)	139
TfiI	GAWTC	2 cut(s)	103, 706
TscAI	CASTG	2 cut(s)	172, 229
TseFI	GTSAC	2 cut(s)	118, 865
TseI	GCWGC	2 cut(s)	40, 950
Tsp45I	GTSAC	2 cut(s)	118, 865
TspDTI	ATGAA	4 cut(s)	195, 824, 842, 977
TspGWI	ACGGA	2 cut(s)	405, 555
TspRI	CASTG	2 cut(s)	172, 229
VspI	ATTAAT	2 cut(s)	357, 393
XapI	RAATTY	5 cut(s)	86, 268, 829, 1089, 1287
XcmI	CCANNNNNNNNNTGG	2 cut(s)	677, 1103
XhoI	CTCGAG	1 cut(s)	1173
XmnI	GAANNNNTTC	1 cut(s)	161
ZrmI	AGTACT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.