Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009447

Physical Location & Seq

Genomic Coordinates Forward (+)

7937264 .. 7938071

Gene Structure 808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTGGGACCTCCTCATAGGCAGCTTTGTGGAAATGTTGGCCTTGATATTACATAACCCCACAAAAATAGCACTAGCAACTCCACCACCATGCCATTATCAAAAGCCACATAGAAAGTTTGGCCTCCCCAAAACCCTTTCCCTTCAATTCACCAAACTCACCAAAATCTGTTCATTAGTTTCTTATTCCATCAAGCAATTCGGCATCCGATTGGTGATTCGAGAGATGAGGAGTATGCTAACAACAATGAGGCAAAATATCCACAACATAAGGAAAAGCCCTAGAGTAGCAGATGAGAGCATGGTAAATGTTGGAGCAGGGAACCCAGCACCAGCAGGATTGCCAATTTTTCCAGCTCACCATCATCGATCGTCACGTGGATCGAAGATCATCCTTGCCGTTGTACTCGTGCCATTTTCTGCAATTTCTTGCTTTTCTCAACCTCATCATGTTCATGGTGCTGATGGGGTGTGGGCATCTGGTGAGTTTTCCCAGATAACGGAGATGAATCAACTAATGGTAAGTGACAGCATGCGCTATGCCATCTTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

20.51

Weight (kDa)

10.02

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04795 AT5G35732 AT5G35732
fragaria_vesca	FvH4_6g41440
malus_domestica	MD09G1119700.v1.1 MD17G1110500.v1.1
prunus_persica	Prupe.3G204400_v2.0.a1
pyrus_communis	pycom09g04450 pycom17g10280
rosa_chinensis	RchiOBHm_Chr2g0156971
rosa_multiflora	Rmu_ssc0000408.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092540
rosa_rugosa	Rorug01G0059900 Rorug02G0457400 Rorug07G0215600
rosa_samantha	Rh1BG061300 Rh2AG523100 Rh2BG536300 Rh2CG508000 Rh2DG545300 Rh7BG348900
rosa_wichuraiana	Rw2G043180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	388
AcvI	CACGTG	1 cut(s)	377
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	499
AgsI	TTSAA	1 cut(s)	146
AluBI	AGCT	2 cut(s)	24, 356
AluI	AGCT	2 cut(s)	24, 356
AlwI	GGATC	1 cut(s)	388
AoxI	GGCC	2 cut(s)	39, 121
ApeKI	GCWGC	1 cut(s)	21
AspLEI	GCGC	1 cut(s)	537
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	5 cut(s)	142, 151, 226, 350, 494
AvaII	GGWCC	1 cut(s)	7
BauI	CACGAG	1 cut(s)	407
BbrPI	CACGTG	1 cut(s)	377
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	4 cut(s)	197, 369, 458, 551
BceAI	ACGGC	1 cut(s)	383
BfaI	CTAG	2 cut(s)	74, 282
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	8, 323
BmsI	GCATC	2 cut(s)	213, 485
Bsa29I	ATCGAT	1 cut(s)	367
BsaAI	YACGTR	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	1 cut(s)	499
BseCI	ATCGAT	1 cut(s)	367
BseGI	GGATG	2 cut(s)	204, 390
BseLI	CCNNNNNNNGG	1 cut(s)	499
BseRI	GAGGAG	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	33
BseYI	CCCAGC	1 cut(s)	325
Bsh1285I	CGRYCG	1 cut(s)	371
BshFI	GGCC	2 cut(s)	41, 123
BshVI	ATCGAT	1 cut(s)	367
BsiEI	CGRYCG	1 cut(s)	371
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	499
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	2 cut(s)	41, 123
Bsp143I	GATC	3 cut(s)	368, 380, 387
BspANI	GGCC	2 cut(s)	41, 123
BspDI	ATCGAT	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	8, 323
BspPI	GGATC	1 cut(s)	388
BssMI	GATC	3 cut(s)	368, 380, 387
BssSI	CACGAG	1 cut(s)	407
Bst2BI	CACGAG	1 cut(s)	407
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	533
BstF5I	GGATG	2 cut(s)	204, 390
BstHHI	GCGC	1 cut(s)	537
BstKTI	GATC	3 cut(s)	371, 383, 390
BstMBI	GATC	3 cut(s)	368, 380, 387
BstMCI	CGRYCG	1 cut(s)	371
BstNSI	RCATGY	1 cut(s)	535
BstV1I	GCAGC	1 cut(s)	33
Bsu15I	ATCGAT	1 cut(s)	367
BsuRI	GGCC	2 cut(s)	41, 123
BsuTUI	ATCGAT	1 cut(s)	367
BtsCI	GGATG	2 cut(s)	204, 390
Cac8I	GCNNGC	1 cut(s)	533
CfoI	GCGC	1 cut(s)	537
Cfr13I	GGNCC	1 cut(s)	7
ClaI	ATCGAT	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	5 cut(s)	90, 301, 449, 455, 532
CviJI	RGCY	6 cut(s)	24, 41, 106, 123, 279, 356
CviKI_1	RGCY	6 cut(s)	24, 41, 106, 123, 279, 356
CviQI	GTAC	1 cut(s)	404
DpnI	GATC	3 cut(s)	370, 382, 389
DpnII	GATC	3 cut(s)	368, 380, 387
Eco47I	GGWCC	1 cut(s)	7
Eco72I	CACGTG	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	7
FaeI	CATG	5 cut(s)	93, 304, 452, 458, 535
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	5 cut(s)	89, 300, 448, 454, 531
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	2 cut(s)	191, 377
Fsp4HI	GCNGC	1 cut(s)	22
FspBI	CTAG	2 cut(s)	74, 282
GlaI	GCGC	1 cut(s)	536
GluI	GCNGC	1 cut(s)	22
GsaI	CCCAGC	1 cut(s)	329
HaeIII	GGCC	2 cut(s)	41, 123
HhaI	GCGC	1 cut(s)	537
Hin1II	CATG	5 cut(s)	93, 304, 452, 458, 535
Hin6I	GCGC	1 cut(s)	535
HinP1I	GCGC	1 cut(s)	535
HinfI	GANTC	2 cut(s)	217, 508
HphI	GGTGA	5 cut(s)	142, 151, 226, 350, 494
Hpy188I	TCNGA	1 cut(s)	209
Hpy188III	TCNNGA	2 cut(s)	221, 547
HpyAV	CCTTC	1 cut(s)	152
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	1 cut(s)	422
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	5 cut(s)	93, 304, 452, 458, 535
HspAI	GCGC	1 cut(s)	535
Kzo9I	GATC	3 cut(s)	368, 380, 387
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	7 cut(s)	303, 321, 339, 345, 366, 465, 506
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	2 cut(s)	213, 485
MaeI	CTAG	2 cut(s)	74, 282
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	2 cut(s)	372, 524
MalI	GATC	3 cut(s)	370, 382, 389
MboI	GATC	3 cut(s)	368, 380, 387
MboII	GAAGA	1 cut(s)	397
MluCI	AATT	4 cut(s)	146, 197, 345, 423
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	6 cut(s)	20, 23, 134, 222, 243, 453
MslI	CAYNNNNRTG	3 cut(s)	88, 453, 548
NdeII	GATC	3 cut(s)	368, 380, 387
NlaIII	CATG	5 cut(s)	93, 304, 452, 458, 535
NlaIV	GGNNCC	2 cut(s)	8, 323
NmuCI	GTSAC	2 cut(s)	372, 524
NspI	RCATGY	1 cut(s)	535
PaeI	GCATGC	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	1 cut(s)	373
PfeI	GAWTC	2 cut(s)	217, 508
PkrI	GCNGC	1 cut(s)	23
Ple19I	CGATCG	1 cut(s)	371
PmaCI	CACGTG	1 cut(s)	377
PmlI	CACGTG	1 cut(s)	377
Ppu21I	YACGTR	1 cut(s)	377
PpuMI	RGGWCCY	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	7
PspCI	CACGTG	1 cut(s)	377
PspFI	CCCAGC	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	8, 323
PspPI	GGNCC	1 cut(s)	7
PspPPI	RGGWCCY	1 cut(s)	7
PvuI	CGATCG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
RseI	CAYNNNNRTG	3 cut(s)	88, 453, 548
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	3 cut(s)	368, 380, 387
Sau96I	GGNCC	1 cut(s)	7
SetI	ASST	5 cut(s)	12, 26, 358, 379, 445
SfaNI	GCATC	2 cut(s)	213, 485
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	3 cut(s)	88, 453, 548
SphI	GCATGC	1 cut(s)	535
Sse9I	AATT	4 cut(s)	146, 197, 345, 423
SspMI	CTAG	2 cut(s)	74, 282
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	3 cut(s)	220, 367, 383
TasI	AATT	4 cut(s)	146, 197, 345, 423
TatI	WGTACW	1 cut(s)	403
TfiI	GAWTC	2 cut(s)	217, 508
TseFI	GTSAC	2 cut(s)	372, 524
TseI	GCWGC	1 cut(s)	21
Tsp45I	GTSAC	2 cut(s)	372, 524
TspDTI	ATGAA	3 cut(s)	162, 443, 521
TspGWI	ACGGA	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	7
XceI	RCATGY	1 cut(s)	535
XspI	CTAG	2 cut(s)	74, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.