pycom17g10900

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0017345
Physical Location & Seq
Reverse (-)
8463916 .. 8466386
2471 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1173 bp
ATGTGGCAGTTTGATATTTTGTTTGAAGATGTTCTAATTAAGTGTGCTTTTCCACTTTTTGGTTCCTCGTTGGCTCTAAAAAACCAAAATTCGCTGGTAATTTCAGGATCTTCGACCACTCAAATCCCGACGGACATGGCTTACAAGAAGAGTAACTATAACCCTCTCTCCGGCGATGGTGCTAGCCCCGGAAAGATCTTCATCGGTGGTTTAGCTAAAGACACCACTTTGAATACCTTCGTTCAGTACTTTGAGAAGTATGGGGAGATAATTGACTCTGTGATCATGAAAGACCGTGAAACTGGTCGACCTAGGGGGTTCGGGTTCATCACCTACGAGGATCCTGCTGTTGTTGACCAATTAATTGAAGAGACTCATGTGATCAACGGAAAACAGGTTGAGATAAAGAGAACCATTCCAAAGGGGGCTGGTCAGGGAAATGATTTTAAAACAAAGAAAATTTTTGTTGGTGGGATTCCACCGACCTTCCCTGAAGATGAGTTCAAAAGCTTCTTTTCACAATTTGGTAAGGTGGTGGAGCATGAGATCATACGTGATCATGTCACTAAGCGCCCTCGAGGATTTGGATTTGTTGTATTTGACAGCGATCATGTTGTTGATAATGTTCTCGCAAATGGAAATAGGATTGATATGGCAGGTACACAGGTTGAGATCAAGAAGGCTGAACCAAAGAAGGCCTCAAACCCCGCACGTGTTCCTGCATTTGGTACTGACTCTAGGGCACACCCTTACAATGATAGATTCGGTGCATTTGGCGACCCCATGAGTAGTTTCGGTCCTGGTGGTTATGGCCCTCCTCCTTATAGGTCACTTGGACGTTTTGGCAGTAGGTTTGGTGATTATGGTGGATATCCAGATACTACTGATTTTGGAGGTGGTTTTAGAGGTGCATTTTCTGGTTATCATGGGGAGTCATCATTCGGCTATCCTAGTCGCTTTGGTTCCTACGGTGAAGGGCTTGGTGGGGGATATGATGGTAGTGGGTTAGGTGCATATGGGCATGAAGTTAGGGGCTATGGTGGTTACGATGGTTCAGGCTCTGGTGATGGCTATGATTCAGGCCCTGCTGCTACTTATGGTGGGCCTCGAGGCATGTATGGTAGTAGGGCAGGTTATGGTGGGAGTAGTCGTTACCATCCCTACGGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0001667 GO:0002064 GO:0002065 GO:0002066 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006403 GO:0006417 GO:0006928 GO:0006935 GO:0007028 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007297 GO:0007298 GO:0007308 GO:0007309 GO:0007314 GO:0007315 GO:0007316 GO:0007319 GO:0007350 GO:0007351 GO:0007389 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008298 GO:0008358 GO:0008595 GO:0009605 GO:0009653 GO:0009790 GO:0009798 GO:0009880 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009948 GO:0009952 GO:0009987 GO:0009994 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010631 GO:0016043 GO:0016477 GO:0017148 GO:0019094 GO:0019219 GO:0019222 GO:0019953 GO:0021700 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0030030 GO:0030154 GO:0030182 GO:0030707 GO:0030855 GO:0031175 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0034248 GO:0034249 GO:0034250 GO:0035282 GO:0035770 GO:0036464 GO:0040011 GO:0042221 GO:0042330 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045451 GO:0045495 GO:0045727 GO:0046011 GO:0048024 GO:0048027 GO:0048468 GO:0048469 GO:0048477 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048599 GO:0048609 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048870 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051641 GO:0051674 GO:0051704 GO:0060255 GO:0060293 GO:0060429 GO:0060810 GO:0060811 GO:0061564 GO:0065007 GO:0070013 GO:0070727 GO:0071840 GO:0080090 GO:0090130 GO:0090132 GO:0097159 GO:0097485 GO:0120036 GO:0120039 GO:1901363 GO:1903311 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

391

Amino Acids

42.06

Weight (kDa)

6.72

Isoelectric Point (pI)

26.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 66 - 124 4.2e-14 RNA recognition motif
RRM_7 PF16367 152 - 214 4.1e-07 RNA recognition motif
RRM_1 PF00076 154 - 221 4.7e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g40460
malus_domestica MD17G1118700.v1.1 MD17G1277100.v1.1
prunus_persica Prupe.3G195500_v2.0.a1
pyrus_communis pycom17g10900
rosa_chinensis RchiOBHm_Chr2g0155691
rosa_multiflora Rmu_co8436359.1_g000001
rosa_roxburghii Rroxscaffold_2G00093550
rosa_rugosa Rorug02G0449400
rosa_samantha Rh2AG515300 Rh2CG500200 Rh2DG535200
rosa_wichuraiana Rw2G042350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 2 cut(s) 576, 1107
Acc36I ACCTGC 2 cut(s) 647, 1121
AccB7I CCANNNNNTGG 1 cut(s) 59
AccI GTMKAC 1 cut(s) 307
AciI CCGC 1 cut(s) 708
AclWI GGATC 3 cut(s) 115, 335, 348
AcsI RAATTY 2 cut(s) 88, 459
AcuI CTGAAG 1 cut(s) 513
AcvI CACGTG 1 cut(s) 713
AfaI GTAC 3 cut(s) 248, 661, 730
AfiI CCNNNNNNNGG 4 cut(s) 59, 170, 725, 1167
AflIII ACRYGT 1 cut(s) 712
AgsI TTSAA 4 cut(s) 26, 232, 368, 505
AjnI CCWGG 1 cut(s) 799
AluBI AGCT 2 cut(s) 215, 510
AluI AGCT 2 cut(s) 215, 510
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 3 cut(s) 115, 335, 348
AlwNI CAGNNNCTG 2 cut(s) 1061, 1085
Ama87I CYCGRG 2 cut(s) 576, 1107
AoxI GGCC 4 cut(s) 696, 811, 1081, 1103
ApeKI GCWGC 1 cut(s) 1088
ApoI RAATTY 2 cut(s) 88, 459
AseI ATTAAT 1 cut(s) 362
Asp700I GAANNNNTTC 2 cut(s) 30, 236
AspA2I CCTAGG 1 cut(s) 311
AspLEI GCGC 1 cut(s) 573
AspS9I GGNCC 4 cut(s) 797, 812, 1082, 1103
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 4 cut(s) 322, 869, 983, 1076
AsuNHI GCTAGC 1 cut(s) 182
AvaI CYCGRG 2 cut(s) 576, 1107
AvaII GGWCC 1 cut(s) 797
AvrII CCTAGG 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 745
BaeI ACNNNNGTAYC 2 cut(s) 651, 684
BamHI GGATCC 1 cut(s) 340
BbrPI CACGTG 1 cut(s) 713
BbvI GCAGC 1 cut(s) 1075
BccI CCATC 5 cut(s) 170, 989, 1043, 1061, 1164
BcgI CGANNNNNNTGC 2 cut(s) 326, 360
BciT130I CCWGG 1 cut(s) 801
BclI TGATCA 3 cut(s) 282, 381, 556
BcnI CCSGG 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 4 cut(s) 183, 312, 738, 951
BfoI RGCGCY 1 cut(s) 574
BfuAI ACCTGC 2 cut(s) 647, 1121
BglII AGATCT 1 cut(s) 195
BisI GCNGC 1 cut(s) 1089
BlnI CCTAGG 1 cut(s) 311
BlsI GCNGC 1 cut(s) 1090
BmcAI AGTACT 1 cut(s) 248
Bme1390I CCNGG 2 cut(s) 189, 801
Bme18I GGWCC 1 cut(s) 797
BmeT110I CYCGRG 2 cut(s) 576, 1107
BmgT120I GGNCC 4 cut(s) 797, 812, 1082, 1103
BmiI GGNNCC 3 cut(s) 64, 342, 964
BmrFI CCNGG 2 cut(s) 189, 801
BmtI GCTAGC 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 189
BsaAI YACGTR 2 cut(s) 554, 713
BsaBI GATNNNNATC 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 187, 311
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 1135, 1165
Bsc4I CCNNNNNNNGG 4 cut(s) 59, 170, 725, 1167
Bse1I ACTGG 1 cut(s) 307
Bse8I GATNNNNATC 1 cut(s) 200
BseBI CCWGG 1 cut(s) 801
BseDI CCNNGG 2 cut(s) 187, 311
BseGI GGATG 1 cut(s) 1156
BseJI GATNNNNATC 1 cut(s) 200
BseLI CCNNNNNNNGG 4 cut(s) 59, 170, 725, 1167
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 807
BseSI GKGCMC 1 cut(s) 745
BseXI GCAGC 1 cut(s) 1075
BshFI GGCC 4 cut(s) 698, 813, 1083, 1105
BsiHKCI CYCGRG 2 cut(s) 576, 1107
BsiSI CCGG 2 cut(s) 171, 189
BslI CCNNNNNNNGG 4 cut(s) 59, 170, 725, 1167
BsmAI GTCTC 1 cut(s) 365
BsnI GGCC 4 cut(s) 698, 813, 1083, 1105
BsoBI CYCGRG 2 cut(s) 576, 1107
Bsp1286I GDGCHC 1 cut(s) 745
Bsp143I GATC 9 cut(s) 107, 195, 282, 340, 381, 546, 556, 607, 672
BspACI CCGC 1 cut(s) 708
BspANI GGCC 4 cut(s) 698, 813, 1083, 1105
BspHI TCATGA 1 cut(s) 285
BspLI GGNNCC 3 cut(s) 64, 342, 964
BspMI ACCTGC 2 cut(s) 647, 1121
BspOI GCTAGC 1 cut(s) 186
BspPI GGATC 3 cut(s) 115, 335, 348
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 2 cut(s) 187, 311
BssMI GATC 9 cut(s) 107, 195, 282, 340, 381, 546, 556, 607, 672
BssT1I CCWWGG 1 cut(s) 311
Bst2UI CCWGG 1 cut(s) 801
Bst4CI ACNGT 2 cut(s) 296, 971
Bst6I CTCTTC 2 cut(s) 143, 363
BstBAI YACGTR 2 cut(s) 554, 713
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 1 cut(s) 567
BstENI CCTNNNNNAGG 1 cut(s) 1165
BstF5I GGATG 1 cut(s) 1156
BstH2I RGCGCY 1 cut(s) 574
BstHHI GCGC 1 cut(s) 573
BstKTI GATC 9 cut(s) 110, 198, 285, 343, 384, 549, 559, 610, 675
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 9 cut(s) 107, 195, 282, 340, 381, 546, 556, 607, 672
BstNI CCWGG 1 cut(s) 801
BstNSI RCATGY 1 cut(s) 1117
BstSCI CCNGG 2 cut(s) 187, 799
BstSLI GKGCMC 1 cut(s) 745
BstV1I GCAGC 1 cut(s) 1075
BstX2I RGATCY 3 cut(s) 107, 195, 340
BstYI RGATCY 3 cut(s) 107, 195, 340
BsuRI GGCC 4 cut(s) 698, 813, 1083, 1105
BtgZI GCGATG 1 cut(s) 189
BtsCI GGATG 1 cut(s) 1156
BveI ACCTGC 2 cut(s) 647, 1121
Cac8I GCNNGC 1 cut(s) 184
CaiI CAGNNNCTG 2 cut(s) 1061, 1085
CciI TCATGA 1 cut(s) 285
CfoI GCGC 1 cut(s) 573
Cfr13I GGNCC 4 cut(s) 797, 812, 1082, 1103
Csp6I GTAC 3 cut(s) 247, 660, 729
CviQI GTAC 3 cut(s) 247, 660, 729
DdeI CTNAG 1 cut(s) 567
DpnI GATC 9 cut(s) 109, 197, 284, 342, 383, 548, 558, 609, 674
DpnII GATC 9 cut(s) 107, 195, 282, 340, 381, 546, 556, 607, 672
DraI TTTAAA 1 cut(s) 448
Eam1104I CTCTTC 2 cut(s) 143, 363
EarI CTCTTC 2 cut(s) 143, 363
Eco130I CCWWGG 1 cut(s) 311
Eco147I AGGCCT 1 cut(s) 698
Eco32I GATATC 1 cut(s) 872
Eco47I GGWCC 1 cut(s) 797
Eco57I CTGAAG 1 cut(s) 513
Eco72I CACGTG 1 cut(s) 713
Eco88I CYCGRG 2 cut(s) 576, 1107
EcoNI CCTNNNNNAGG 1 cut(s) 1165
EcoO109I RGGNCCY 1 cut(s) 1082
EcoRII CCWGG 1 cut(s) 799
EcoRV GATATC 1 cut(s) 872
EcoT14I CCWWGG 1 cut(s) 311
ErhI CCWWGG 1 cut(s) 311
FauI CCCGC 1 cut(s) 715
FauNDI CATATG 1 cut(s) 1015
FbaI TGATCA 3 cut(s) 282, 381, 556
FblI GTMKAC 1 cut(s) 307
Fnu4HI GCNGC 1 cut(s) 1089
FokI GGATG 1 cut(s) 1143
Fsp4HI GCNGC 1 cut(s) 1089
FspBI CTAG 4 cut(s) 183, 312, 738, 951
GlaI GCGC 1 cut(s) 572
GluI GCNGC 1 cut(s) 1089
HaeII RGCGCY 1 cut(s) 574
HaeIII GGCC 4 cut(s) 698, 813, 1083, 1105
HapII CCGG 2 cut(s) 171, 189
HhaI GCGC 1 cut(s) 573
Hin6I GCGC 1 cut(s) 571
HinP1I GCGC 1 cut(s) 571
HincII GTYRAC 2 cut(s) 308, 355
HindII GTYRAC 2 cut(s) 308, 355
HindIII AAGCTT 1 cut(s) 508
HinfI GANTC 7 cut(s) 275, 373, 475, 734, 762, 932, 1076
HpaII CCGG 2 cut(s) 171, 189
HphI GGTGA 4 cut(s) 322, 869, 983, 1076
Hpy166II GTNNAC 3 cut(s) 308, 355, 662
Hpy188III TCNNGA 5 cut(s) 105, 127, 286, 676, 875
Hpy8I GTNNAC 3 cut(s) 308, 355, 662
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 6 cut(s) 247, 496, 673, 688, 968, 1161
HpyCH4III ACNGT 2 cut(s) 296, 971
HpyCH4IV ACGT 3 cut(s) 553, 712, 838
HpyCH4V TGCA 4 cut(s) 722, 770, 911, 1013
HpyF3I CTNAG 1 cut(s) 567
HpySE526I ACGT 3 cut(s) 553, 712, 838
HspAI GCGC 1 cut(s) 571
Ksp22I TGATCA 3 cut(s) 282, 381, 556
Kzo9I GATC 9 cut(s) 107, 195, 282, 340, 381, 546, 556, 607, 672
LmnI GCTCC 1 cut(s) 538
Lsp1109I GCAGC 1 cut(s) 1075
MaeI CTAG 4 cut(s) 183, 312, 738, 951
MaeII ACGT 3 cut(s) 553, 712, 838
MaeIII GTNAC 5 cut(s) 152, 562, 828, 1043, 1151
MalI GATC 9 cut(s) 109, 197, 284, 342, 383, 548, 558, 609, 674
MboI GATC 9 cut(s) 107, 195, 282, 340, 381, 546, 556, 607, 672
MboII GAAGA 6 cut(s) 38, 102, 160, 190, 380, 506
MflI RGATCY 3 cut(s) 107, 195, 340
MhlI GDGCHC 1 cut(s) 745
MluCI AATT 8 cut(s) 36, 88, 99, 270, 359, 363, 459, 521
MlyI GAGTC 4 cut(s) 269, 367, 728, 941
MroXI GAANNNNTTC 2 cut(s) 30, 236
MseI TTAA 3 cut(s) 39, 362, 447
MspI CCGG 2 cut(s) 171, 189
MspR9I CCNGG 2 cut(s) 189, 801
MvaI CCWGG 1 cut(s) 801
NciI CCSGG 1 cut(s) 189
NdeI CATATG 1 cut(s) 1015
NdeII GATC 9 cut(s) 107, 195, 282, 340, 381, 546, 556, 607, 672
NheI GCTAGC 1 cut(s) 182
NlaIV GGNNCC 3 cut(s) 64, 342, 964
NmuCI GTSAC 2 cut(s) 562, 828
NspI RCATGY 1 cut(s) 1117
PaeR7I CTCGAG 2 cut(s) 576, 1107
PagI TCATGA 1 cut(s) 285
PceI AGGCCT 1 cut(s) 698
PdmI GAANNNNTTC 2 cut(s) 30, 236
PfeI GAWTC 3 cut(s) 475, 762, 1076
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 1 cut(s) 1090
PleI GAGTC 4 cut(s) 269, 367, 728, 940
PmaCI CACGTG 1 cut(s) 713
PmlI CACGTG 1 cut(s) 713
PpsI GAGTC 4 cut(s) 269, 367, 728, 940
Ppu21I YACGTR 2 cut(s) 554, 713
PshBI ATTAAT 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 799
PspCI CACGTG 1 cut(s) 713
PspGI CCWGG 1 cut(s) 799
PspN4I GGNNCC 3 cut(s) 64, 342, 964
PspPI GGNCC 4 cut(s) 797, 812, 1082, 1103
PspXI VCTCGAGB 2 cut(s) 576, 1107
PstNI CAGNNNCTG 2 cut(s) 1061, 1085
PsuI RGATCY 3 cut(s) 107, 195, 340
RsaI GTAC 3 cut(s) 248, 661, 730
RsaNI GTAC 3 cut(s) 247, 660, 729
SalI GTCGAC 1 cut(s) 306
SaqAI TTAA 3 cut(s) 39, 362, 447
SatI GCNGC 1 cut(s) 1089
Sau3AI GATC 9 cut(s) 107, 195, 282, 340, 381, 546, 556, 607, 672
Sau96I GGNCC 4 cut(s) 797, 812, 1082, 1103
ScaI AGTACT 1 cut(s) 248
SchI GAGTC 4 cut(s) 269, 367, 728, 941
ScrFI CCNGG 2 cut(s) 189, 801
SduI GDGCHC 1 cut(s) 745
Sfr274I CTCGAG 2 cut(s) 576, 1107
SinI GGWCC 1 cut(s) 797
SlaI CTCGAG 2 cut(s) 576, 1107
SmlI CTYRAG 2 cut(s) 576, 1107
SmoI CTYRAG 2 cut(s) 576, 1107
Sse9I AATT 8 cut(s) 36, 88, 99, 270, 359, 363, 459, 521
SseBI AGGCCT 1 cut(s) 698
SsiI CCGC 1 cut(s) 708
SspMI CTAG 4 cut(s) 183, 312, 738, 951
StuI AGGCCT 1 cut(s) 698
StyD4I CCNGG 2 cut(s) 187, 799
StyI CCWWGG 1 cut(s) 311
TaaI ACNGT 2 cut(s) 296, 971
TaiI ACGT 3 cut(s) 556, 715, 841
TaqI TCGA 4 cut(s) 113, 307, 577, 1108
TaqII GACCGA 1 cut(s) 785
TasI AATT 8 cut(s) 36, 88, 99, 270, 359, 363, 459, 521
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 3 cut(s) 475, 762, 1076
Tru1I TTAA 3 cut(s) 39, 362, 447
Tru9I TTAA 3 cut(s) 39, 362, 447
TseFI GTSAC 2 cut(s) 562, 828
TseI GCWGC 1 cut(s) 1088
Tsp45I GTSAC 2 cut(s) 562, 828
TspDTI ATGAA 4 cut(s) 190, 302, 316, 1038
TspGWI ACGGA 2 cut(s) 146, 402
Van91I CCANNNNNTGG 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 797
VspI ATTAAT 1 cut(s) 362
XagI CCTNNNNNAGG 1 cut(s) 1165
XapI RAATTY 2 cut(s) 88, 459
XceI RCATGY 1 cut(s) 1117
XhoI CTCGAG 2 cut(s) 576, 1107
XmaJI CCTAGG 1 cut(s) 311
XmiI GTMKAC 1 cut(s) 307
XmnI GAANNNNTTC 2 cut(s) 30, 236
XspI CTAG 4 cut(s) 183, 312, 738, 951
ZrmI AGTACT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.