Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0020218

Physical Location & Seq

Genomic Coordinates Forward (+)

9765919 .. 9766611

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g11960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGATATTCCAGTCTCGAAACGGAGGAGGAAGTTTTCCAGCAAATTTATCGCAGCTGCCGGCCTAATCACCCTCTGCATTGTCATGTTCAAGCAGTCACATGATTCTAGCAATCTCAACAAGTTCTCTTATCATGAAGCAGGGATCGATCATGTCTTGGTCACAGGAGGAGCTGGCTACATAGGCTCTCATGCTGCACTTAGGCTCTTGAAGGACTCATACCGAGTAACGATAGTGCCGATGACGGAGTTACGCGTATCGTCGCATGACAATGGCAACTTGGACCGTGACTTAATGAGAGATAAGGGAATGCATATGGGGCTCCGTGGTGAGATTGCTCAGCACGCAATCGTTTCAGAAGAGGGATGTGTGCCTAGGATTTGGAGAAAATATACGATATGGTTCTTTTTGGTTGTATTGCTATTATTTTTGCCAAGAGTTTCTTCTAGGAAAGTGCTATTTTCTTTCCTTTTTTGTAGAAAATTTCTCATTTATGAAACGTGCAAGATGAGAATTCAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0009058 GO:0009832 GO:0009987 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019322 GO:0019566 GO:0019567 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044238 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046364 GO:0050373 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

175

Amino Acids

20.04

Weight (kDa)

10.02

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30620
pyrus_communis	pycom17g11960 pycom17g11970
rosa_multiflora	Rmu_sc0005702.1_g000001 Rmu_sc0022928.1_g000001
rosa_wichuraiana	Rw2G041570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	255
AclWI	GGATC	1 cut(s)	152
AcsI	RAATTY	3 cut(s)	44, 482, 513
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	2 cut(s)	91, 211
AjuI	GAANNNNNNNTTGG	2 cut(s)	427, 459
AluBI	AGCT	2 cut(s)	56, 173
AluI	AGCT	2 cut(s)	56, 173
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	3 cut(s)	53, 56, 194
ApoI	RAATTY	3 cut(s)	44, 482, 513
AspA2I	CCTAGG	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	2 cut(s)	61, 341
AvaII	GGWCC	1 cut(s)	283
AvrII	CCTAGG	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	324
BarI	GAAGNNNNNNTAC	2 cut(s)	203, 235
BbvI	GCAGC	3 cut(s)	43, 65, 181
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	3 cut(s)	108, 375, 447
BisI	GCNGC	3 cut(s)	54, 57, 195
BlnI	CCTAGG	1 cut(s)	374
BlpI	GCTNAGC	1 cut(s)	339
BlsI	GCNGC	3 cut(s)	55, 58, 196
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	323
Bpu1102I	GCTNAGC	1 cut(s)	339
Bsa29I	ATCGAT	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	325, 374
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	11
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	325, 374
BseGI	GGATG	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	2 cut(s)	40, 183
BseXI	GCAGC	3 cut(s)	43, 65, 181
BsgI	GTGCAG	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	63
BshVI	ATCGAT	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	144, 148
Bsp1720I	GCTNAGC	1 cut(s)	339
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	352
BspDI	ATCGAT	1 cut(s)	147
BspFNI	CGCG	1 cut(s)	255
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	323
BspPI	GGATC	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	325, 374
BssMI	GATC	2 cut(s)	144, 148
BssT1I	CCWWGG	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	287
Bst6I	CTCTTC	1 cut(s)	354
BstC8I	GCNNGC	3 cut(s)	61, 175, 345
BstDEI	CTNAG	2 cut(s)	200, 339
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	371
BstFNI	CGCG	1 cut(s)	255
BstKTI	GATC	2 cut(s)	147, 151
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	2 cut(s)	144, 148
BstMWI	GCNNNNNNNGC	3 cut(s)	183, 319, 344
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	3 cut(s)	43, 65, 181
Bsu15I	ATCGAT	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	63
BsuTUI	ATCGAT	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	371
Cac8I	GCNNGC	3 cut(s)	61, 175, 345
CciI	TCATGA	1 cut(s)	133
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	283
ClaI	ATCGAT	1 cut(s)	147
CviAII	CATG	6 cut(s)	85, 101, 134, 152, 191, 266
CviJI	RGCY	7 cut(s)	56, 63, 173, 177, 186, 205, 322
CviKI_1	RGCY	7 cut(s)	56, 63, 173, 177, 186, 205, 322
DdeI	CTNAG	2 cut(s)	200, 339
DpnI	GATC	2 cut(s)	146, 150
DpnII	GATC	2 cut(s)	144, 148
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	374
Eco24I	GRGCYC	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	513
EcoT14I	CCWWGG	1 cut(s)	374
EcoT22I	ATGCAT	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	374
FaeI	CATG	6 cut(s)	88, 104, 137, 155, 194, 269
FalI	AAGNNNNNCTT	2 cut(s)	427, 459
FatI	CATG	6 cut(s)	84, 100, 133, 151, 190, 265
FauNDI	CATATG	1 cut(s)	315
Fnu4HI	GCNGC	3 cut(s)	54, 57, 195
FokI	GGATG	1 cut(s)	378
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	3 cut(s)	54, 57, 195
FspBI	CTAG	3 cut(s)	108, 375, 447
GluI	GCNGC	3 cut(s)	54, 57, 195
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	6 cut(s)	88, 104, 137, 155, 194, 269
HinfI	GANTC	2 cut(s)	104, 215
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	2 cut(s)	61, 341
Hpy188I	TCNGA	2 cut(s)	358, 519
Hpy188III	TCNNGA	3 cut(s)	16, 134, 208
Hpy99I	CGWCG	1 cut(s)	265
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4IV	ACGT	1 cut(s)	500
HpyCH4V	TGCA	4 cut(s)	78, 197, 313, 504
HpyF10VI	GCNNNNNNNGC	3 cut(s)	183, 319, 344
HpyF3I	CTNAG	2 cut(s)	200, 339
HpySE526I	ACGT	1 cut(s)	500
Hsp92II	CATG	6 cut(s)	88, 104, 137, 155, 194, 269
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	144, 148
LmnI	GCTCC	2 cut(s)	170, 327
LpnPI	CCDG	6 cut(s)	24, 52, 73, 126, 150, 159
Lsp1109I	GCAGC	3 cut(s)	43, 65, 181
MaeI	CTAG	3 cut(s)	108, 375, 447
MaeII	ACGT	1 cut(s)	500
MaeIII	GTNAC	5 cut(s)	96, 160, 226, 249, 287
MalI	GATC	2 cut(s)	146, 150
MboI	GATC	2 cut(s)	144, 148
MboII	GAAGA	2 cut(s)	371, 435
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	3 cut(s)	44, 482, 513
MluI	ACGCGT	1 cut(s)	253
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	5 cut(s)	18, 21, 83, 161, 355
Mph1103I	ATGCAT	1 cut(s)	315
MroNI	GCCGGC	1 cut(s)	59
MseI	TTAA	1 cut(s)	293
MslI	CAYNNNNRTG	2 cut(s)	83, 270
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	1 cut(s)	60
Mva1269I	GAATGC	1 cut(s)	315
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	3 cut(s)	183, 319, 344
NaeI	GCCGGC	1 cut(s)	61
NdeI	CATATG	1 cut(s)	315
NdeII	GATC	2 cut(s)	144, 148
NgoMIV	GCCGGC	1 cut(s)	59
NlaIII	CATG	6 cut(s)	88, 104, 137, 155, 194, 269
NlaIV	GGNNCC	1 cut(s)	323
NmuCI	GTSAC	3 cut(s)	96, 160, 287
NsiI	ATGCAT	1 cut(s)	315
PagI	TCATGA	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	236
PctI	GAATGC	1 cut(s)	315
PdiI	GCCGGC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	3 cut(s)	55, 58, 196
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	323
PspPI	GGNCC	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	56
RseI	CAYNNNNRTG	2 cut(s)	83, 270
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	3 cut(s)	54, 57, 195
Sau3AI	GATC	2 cut(s)	144, 148
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	209
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	3 cut(s)	58, 175, 503
SinI	GGWCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	2 cut(s)	83, 270
Sse9I	AATT	3 cut(s)	44, 482, 513
SspMI	CTAG	3 cut(s)	108, 375, 447
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	1 cut(s)	287
TaiI	ACGT	1 cut(s)	503
TaqI	TCGA	2 cut(s)	17, 147
TasI	AATT	3 cut(s)	44, 482, 513
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TseFI	GTSAC	3 cut(s)	96, 160, 287
TseI	GCWGC	3 cut(s)	53, 56, 194
Tsp45I	GTSAC	3 cut(s)	96, 160, 287
TspDTI	ATGAA	2 cut(s)	150, 510
TspGWI	ACGGA	3 cut(s)	37, 260, 314
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	3 cut(s)	44, 482, 513
XmaJI	CCTAGG	1 cut(s)	374
XspI	CTAG	3 cut(s)	108, 375, 447
Zsp2I	ATGCAT	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.