Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005702.1

Orthogroup ID

OG0020218

Physical Location & Seq

Genomic Coordinates Reverse (-)

518 .. 3090

Gene Structure 2573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005702.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgctaaattttgccaggggcagacgagagtcacggtccaatagacccctgtcgcttggaggcatggattacccagatcccaagaggaagaacaattttgtaggaaaaattattttggctgctgcccttacggcgctatgcattatcatgctgaaacaatccccatcgttcaatcctactagcacgttctcccgtcgtgaatcaggagtaacccatgtcctagtaacgggaggtgctggatatattggttcacatgctgcattacgacttctaaaggattcataccgtgtaactattgtggataacctctcacggggaaacctaggtgcagtcaaggttctccaacaactatttcctgagcctgggaggctgcaatttatttatgctgacttgggggatccaaaatccgttaacaaaatattttcagagaatgcatttgatgctgtgatgcattttgcagctgtagcatatgtcggggaaagcacccttgatccacttaagtattaccacaatattacatcaaataccttggtagtagtagaggcgatggccaaacatcgtgtgaggacattaatatattctagcacatgtgcaacatatggagaaccggaaaagatgcctattactgaagaaactacacaggtcccaattaatccatatggaaaagctaagaagatggcagaggatattatcctggatttctctaagaattcaaacatggcagtcatgatcctgaggttggtgctttattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009856 GO:0009987 GO:0010154 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019322 GO:0019566 GO:0019567 GO:0022414 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044238 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046364 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050373 GO:0051704 GO:0061458 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

250

Amino Acids

27.68

Weight (kDa)

9.52

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30620
pyrus_communis	pycom17g11960 pycom17g11970
rosa_multiflora	Rmu_sc0005702.1_g000001 Rmu_sc0022928.1_g000001
rosa_wichuraiana	Rw2G041570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	71, 392, 405, 485, 724
AcoI	YGGCCR	1 cut(s)	549
AcsI	RAATTY	2 cut(s)	7, 709
AcuI	CTGAAG	1 cut(s)	648
AfiI	CCNNNNNNNGG	4 cut(s)	226, 313, 362, 739
AflII	CTTAAG	1 cut(s)	497
AflIII	ACRYGT	1 cut(s)	587
AgsI	TTSAA	2 cut(s)	172, 714
AjnI	CCWGG	3 cut(s)	14, 361, 693
AjuI	GAANNNNNNNTTGG	2 cut(s)	336, 368
AluBI	AGCT	2 cut(s)	461, 668
AluI	AGCT	2 cut(s)	461, 668
AlwI	GGATC	5 cut(s)	71, 392, 405, 485, 724
AoxI	GGCC	1 cut(s)	549
ApeKI	GCWGC	5 cut(s)	119, 122, 257, 370, 458
ApoI	RAATTY	2 cut(s)	7, 709
AseI	ATTAAT	2 cut(s)	572, 651
AspA2I	CCTAGG	1 cut(s)	322
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	2 cut(s)	36, 643
AvaII	GGWCC	2 cut(s)	36, 643
AvrII	CCTAGG	1 cut(s)	322
AxyI	CCTNAGG	1 cut(s)	734
BalI	TGGCCA	1 cut(s)	551
BamHI	GGATCC	1 cut(s)	397
BbvI	GCAGC	5 cut(s)	106, 109, 244, 357, 470
BccI	CCATC	3 cut(s)	172, 541, 670
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	3 cut(s)	16, 363, 695
BfaI	CTAG	4 cut(s)	180, 221, 323, 582
BfmI	CTRYAG	1 cut(s)	462
BfoI	RGCGCY	1 cut(s)	137
BfrI	CTTAAG	1 cut(s)	497
BglI	GCCNNNNNGGC	2 cut(s)	131, 367
BisI	GCNGC	5 cut(s)	120, 123, 258, 371, 459
BlnI	CCTAGG	1 cut(s)	322
BlsI	GCNGC	5 cut(s)	121, 124, 259, 372, 460
Bme1390I	CCNGG	3 cut(s)	16, 363, 695
Bme18I	GGWCC	2 cut(s)	36, 643
BmgT120I	GGNCC	2 cut(s)	36, 643
BmiI	GGNNCC	2 cut(s)	399, 645
BmrFI	CCNGG	3 cut(s)	16, 363, 695
BmsI	GCATC	3 cut(s)	430, 438, 606
BoxI	GACNNNNGTC	2 cut(s)	28, 49
Bpu10I	CCTNAGC	1 cut(s)	357
BsaJI	CCNNGG	4 cut(s)	15, 322, 362, 528
BsaWI	WCCGGW	1 cut(s)	607
Bsc4I	CCNNNNNNNGG	4 cut(s)	226, 313, 362, 739
Bse21I	CCTNAGG	1 cut(s)	734
BseBI	CCWGG	3 cut(s)	16, 363, 695
BseDI	CCNNGG	4 cut(s)	15, 322, 362, 528
BseLI	CCNNNNNNNGG	4 cut(s)	226, 313, 362, 739
BseMII	CTCAG	2 cut(s)	348, 725
BseXI	GCAGC	5 cut(s)	106, 109, 244, 357, 470
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	608
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	4 cut(s)	226, 313, 362, 739
BsmFI	GGGAC	1 cut(s)	629
BsmI	GAATGC	1 cut(s)	436
BsnI	GGCC	1 cut(s)	551
Bsp143I	GATC	4 cut(s)	76, 397, 490, 729
BspANI	GGCC	1 cut(s)	551
BspCNI	CTCAG	2 cut(s)	349, 726
BspHI	TCATGA	1 cut(s)	726
BspLI	GGNNCC	2 cut(s)	399, 645
BspPI	GGATC	5 cut(s)	71, 392, 405, 485, 724
BspTI	CTTAAG	1 cut(s)	497
BssECI	CCNNGG	4 cut(s)	15, 322, 362, 528
BssMI	GATC	4 cut(s)	76, 397, 490, 729
BssT1I	CCWWGG	2 cut(s)	322, 528
Bst2UI	CCWGG	3 cut(s)	16, 363, 695
Bst4CI	ACNGT	2 cut(s)	36, 287
BstAFI	CTTAAG	1 cut(s)	497
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstDEI	CTNAG	4 cut(s)	357, 669, 705, 734
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	4 cut(s)	79, 400, 493, 732
BstMBI	GATC	4 cut(s)	76, 397, 490, 729
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 367, 440, 464
BstNI	CCWGG	3 cut(s)	16, 363, 695
BstNSI	RCATGY	2 cut(s)	257, 591
BstPAI	GACNNNNGTC	2 cut(s)	28, 49
BstSCI	CCNGG	3 cut(s)	14, 361, 693
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	5 cut(s)	106, 109, 244, 357, 470
BstX2I	RGATCY	2 cut(s)	76, 397
BstYI	RGATCY	2 cut(s)	76, 397
Bsu36I	CCTNAGG	1 cut(s)	734
BsuRI	GGCC	1 cut(s)	551
BtgZI	GCGATG	1 cut(s)	560
CciI	TCATGA	1 cut(s)	726
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	2 cut(s)	36, 643
CviAII	CATG	7 cut(s)	64, 148, 215, 254, 588, 718, 727
CviJI	RGCY	6 cut(s)	119, 361, 370, 461, 551, 668
CviKI_1	RGCY	6 cut(s)	119, 361, 370, 461, 551, 668
DdeI	CTNAG	4 cut(s)	357, 669, 705, 734
DpnI	GATC	4 cut(s)	78, 399, 492, 731
DpnII	GATC	4 cut(s)	76, 397, 490, 729
EaeI	YGGCCR	1 cut(s)	549
Eco130I	CCWWGG	2 cut(s)	322, 528
Eco47I	GGWCC	2 cut(s)	36, 643
Eco57I	CTGAAG	1 cut(s)	648
Eco81I	CCTNAGG	1 cut(s)	734
EcoO109I	RGGNCCY	1 cut(s)	643
EcoRI	GAATTC	1 cut(s)	709
EcoRII	CCWGG	3 cut(s)	14, 361, 693
EcoT14I	CCWWGG	2 cut(s)	322, 528
EcoT22I	ATGCAT	3 cut(s)	143, 436, 453
ErhI	CCWWGG	2 cut(s)	322, 528
FaeI	CATG	7 cut(s)	67, 151, 218, 257, 591, 721, 730
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	7 cut(s)	63, 147, 214, 253, 587, 717, 726
FauNDI	CATATG	3 cut(s)	469, 598, 658
Fnu4HI	GCNGC	5 cut(s)	120, 123, 258, 371, 459
Fsp4HI	GCNGC	5 cut(s)	120, 123, 258, 371, 459
FspBI	CTAG	4 cut(s)	180, 221, 323, 582
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	5 cut(s)	120, 123, 258, 371, 459
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	551
HapII	CCGG	1 cut(s)	608
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	7 cut(s)	67, 151, 218, 257, 591, 721, 730
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	3 cut(s)	29, 200, 278
HpaI	GTTAAC	1 cut(s)	412
HpaII	CCGG	1 cut(s)	608
Hpy166II	GTNNAC	2 cut(s)	251, 412
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	5 cut(s)	197, 204, 356, 727, 733
Hpy8I	GTNNAC	2 cut(s)	251, 412
Hpy99I	CGWCG	1 cut(s)	198
HpyCH4III	ACNGT	2 cut(s)	36, 287
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	8 cut(s)	141, 260, 329, 373, 434, 451, 458, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 367, 440, 464
HpyF3I	CTNAG	4 cut(s)	357, 669, 705, 734
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	7 cut(s)	67, 151, 218, 257, 591, 721, 730
HspAI	GCGC	1 cut(s)	134
KspAI	GTTAAC	1 cut(s)	412
Kzo9I	GATC	4 cut(s)	76, 397, 490, 729
Lsp1109I	GCAGC	5 cut(s)	106, 109, 244, 357, 470
LweI	GCATC	3 cut(s)	430, 438, 606
MaeI	CTAG	4 cut(s)	180, 221, 323, 582
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	4 cut(s)	30, 208, 223, 289
MalI	GATC	4 cut(s)	78, 399, 492, 731
MboI	GATC	4 cut(s)	76, 397, 490, 729
MboII	GAAGA	3 cut(s)	100, 641, 685
MflI	RGATCY	2 cut(s)	76, 397
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	6 cut(s)	7, 94, 108, 374, 648, 709
MluNI	TGGCCA	1 cut(s)	551
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	367
MnlI	CCTC	9 cut(s)	53, 78, 224, 317, 360, 535, 558, 676, 729
Mox20I	TGGCCA	1 cut(s)	551
Mph1103I	ATGCAT	3 cut(s)	143, 436, 453
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	4 cut(s)	411, 498, 572, 651
MslI	CAYNNNNRTG	1 cut(s)	146
Msp20I	TGGCCA	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	461
MspCI	CTTAAG	1 cut(s)	497
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	3 cut(s)	16, 363, 695
Mva1269I	GAATGC	1 cut(s)	436
MvaI	CCWGG	3 cut(s)	16, 363, 695
MwoI	GCNNNNNNNGC	4 cut(s)	131, 367, 440, 464
NdeI	CATATG	3 cut(s)	469, 598, 658
NdeII	GATC	4 cut(s)	76, 397, 490, 729
NlaIII	CATG	7 cut(s)	67, 151, 218, 257, 591, 721, 730
NlaIV	GGNNCC	2 cut(s)	399, 645
NmuCI	GTSAC	1 cut(s)	30
NsiI	ATGCAT	3 cut(s)	143, 436, 453
NspI	RCATGY	2 cut(s)	257, 591
PagI	TCATGA	1 cut(s)	726
PciI	ACATGT	1 cut(s)	587
PctI	GAATGC	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	200, 278
PfoI	TCCNGGA	1 cut(s)	693
PkrI	GCNGC	5 cut(s)	121, 124, 259, 372, 460
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	643
PscI	ACATGT	1 cut(s)	587
PshAI	GACNNNNGTC	2 cut(s)	28, 49
PshBI	ATTAAT	2 cut(s)	572, 651
Psp5II	RGGWCCY	1 cut(s)	643
Psp6I	CCWGG	3 cut(s)	14, 361, 693
PspGI	CCWGG	3 cut(s)	14, 361, 693
PspN4I	GGNNCC	2 cut(s)	399, 645
PspPI	GGNCC	2 cut(s)	36, 643
PspPPI	RGGWCCY	1 cut(s)	643
PsuI	RGATCY	2 cut(s)	76, 397
PvuII	CAGCTG	1 cut(s)	461
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	4 cut(s)	411, 498, 572, 651
SatI	GCNGC	5 cut(s)	120, 123, 258, 371, 459
Sau3AI	GATC	4 cut(s)	76, 397, 490, 729
Sau96I	GGNCC	2 cut(s)	36, 643
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	3 cut(s)	16, 363, 695
SfaNI	GCATC	3 cut(s)	430, 438, 606
SfcI	CTRYAG	1 cut(s)	462
SinI	GGWCC	2 cut(s)	36, 643
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	6 cut(s)	7, 94, 108, 374, 648, 709
SspI	AATATT	2 cut(s)	420, 514
SspMI	CTAG	4 cut(s)	180, 221, 323, 582
StyD4I	CCNGG	3 cut(s)	14, 361, 693
StyI	CCWWGG	2 cut(s)	322, 528
TaaI	ACNGT	2 cut(s)	36, 287
TaiI	ACGT	1 cut(s)	188
TasI	AATT	6 cut(s)	7, 94, 108, 374, 648, 709
TfiI	GAWTC	2 cut(s)	200, 278
Tru1I	TTAA	4 cut(s)	411, 498, 572, 651
Tru9I	TTAA	4 cut(s)	411, 498, 572, 651
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	5 cut(s)	119, 122, 257, 370, 458
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	1 cut(s)	270
TspGWI	ACGGA	1 cut(s)	397
Vha464I	CTTAAG	1 cut(s)	497
VpaK11BI	GGWCC	2 cut(s)	36, 643
VspI	ATTAAT	2 cut(s)	572, 651
XapI	RAATTY	2 cut(s)	7, 709
XceI	RCATGY	2 cut(s)	257, 591
XmaJI	CCTAGG	1 cut(s)	322
XspI	CTAG	4 cut(s)	180, 221, 323, 582
Zsp2I	ATGCAT	3 cut(s)	143, 436, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.