Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0020218

Physical Location & Seq

Genomic Coordinates Forward (+)

9770589 .. 9771564

Gene Structure 976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g11970.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGATATTGCAGTCTCGAAACGGAGGAGGAACTTTTCCAGCAAATTTATCGCAGCTGCCGGCCTAATCACCCTCTGCATTGTCATATTCAAGCAGTCACATGATTCTAGCAGTCTCAACAAGTTTTCTTTTCATGAAGCAGGGATCAATCATGTCTTGGTCACAGGAGGAGCTGGCTACATAGGCTCTCATGCTGCACTTAGGCTCTTGAAGGACTCATGCCGTGTAACGATAGTGGACAATCTCTCTCGAGGAAACATCGGTGCTTTTAGGGTTCTTCAACAGTTGTTTCCAGAACCCGGGAGGCTTCAGTTCGTATACGCTGACCTCGGAGACGCAAAAGCTGTCAATAAAATCTTCTCAGAGAATGCATTTGATGCTGTCATGCATTTTGCAGCTGTTGCTTATGTTGGGGAAAGTACAGTCGAGCCTCTTCGATACTATCACAATATCACATCAAATACCCTGTTGGTTTTGGAGGCAATGGCAGCACACAATGTAAAAACATTGATCTATTCTAGTACTTGTGCAACTTATGGTGAACCTAAGAAGATGCCGATCACCGAAGAAACCGAGCAAGTGAGATTTCGTAACACAGTTTTAGTTGTCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0009058 GO:0009832 GO:0009987 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019322 GO:0019566 GO:0019567 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044238 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046364 GO:0050373 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

205

Amino Acids

22.46

Weight (kDa)

8.99

Isoelectric Point (pI)

53.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30620
pyrus_communis	pycom17g11960 pycom17g11970
rosa_multiflora	Rmu_sc0005702.1_g000001 Rmu_sc0022928.1_g000001
rosa_wichuraiana	Rw2G041570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	318
AclWI	GGATC	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	2 cut(s)	421, 523
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	3 cut(s)	91, 211, 281
AluBI	AGCT	4 cut(s)	56, 173, 344, 398
AluI	AGCT	4 cut(s)	56, 173, 344, 398
Alw26I	GTCTC	3 cut(s)	19, 119, 327
AlwI	GGATC	1 cut(s)	152
Ama87I	CYCGRG	2 cut(s)	249, 299
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	5 cut(s)	53, 56, 194, 395, 488
ApoI	RAATTY	1 cut(s)	44
AsuC2I	CCSGG	2 cut(s)	300, 301
AsuHPI	GGTGA	3 cut(s)	61, 551, 553
AvaI	CYCGRG	2 cut(s)	249, 299
BbvI	GCAGC	5 cut(s)	43, 65, 181, 407, 500
BceAI	ACGGC	1 cut(s)	207
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BcnI	CCSGG	2 cut(s)	300, 301
BcoDI	GTCTC	3 cut(s)	19, 119, 327
BfaI	CTAG	2 cut(s)	108, 519
BisI	GCNGC	5 cut(s)	54, 57, 195, 396, 489
BlsI	GCNGC	5 cut(s)	55, 58, 196, 397, 490
BmcAI	AGTACT	1 cut(s)	523
Bme1390I	CCNGG	2 cut(s)	300, 301
BmeT110I	CYCGRG	2 cut(s)	249, 299
BmrFI	CCNGG	2 cut(s)	300, 301
BmsI	GCATC	2 cut(s)	367, 543
BpuMI	CCSGG	2 cut(s)	300, 301
BsaBI	GATNNNNATC	1 cut(s)	557
BsaJI	CCNNGG	2 cut(s)	299, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse118I	RCCGGY	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	489
Bse8I	GATNNNNATC	1 cut(s)	557
BseDI	CCNNGG	2 cut(s)	299, 328
BseJI	GATNNNNATC	1 cut(s)	557
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	375
BseRI	GAGGAG	2 cut(s)	40, 183
BseXI	GCAGC	5 cut(s)	43, 65, 181, 407, 500
BsgI	GTGCAG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	63
BsiHKCI	CYCGRG	2 cut(s)	249, 299
BsiSI	CCGG	2 cut(s)	60, 300
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	3 cut(s)	19, 119, 327
BsmBI	CGTCTC	1 cut(s)	327
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	63
BsoBI	CYCGRG	2 cut(s)	249, 299
Bsp143I	GATC	3 cut(s)	144, 510, 558
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	374
BspHI	TCATGA	1 cut(s)	133
BspPI	GGATC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	489
BsrFI	RCCGGY	1 cut(s)	59
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	299, 328
BssMI	GATC	3 cut(s)	144, 510, 558
BssNAI	GTATAC	1 cut(s)	319
Bst1107I	GTATAC	1 cut(s)	319
Bst4CI	ACNGT	3 cut(s)	285, 424, 598
Bst6I	CTCTTC	1 cut(s)	438
BstAPI	GCANNNNNTGC	2 cut(s)	377, 401
BstC8I	GCNNGC	2 cut(s)	61, 175
BstDEI	CTNAG	3 cut(s)	200, 361, 546
BstKTI	GATC	3 cut(s)	147, 513, 561
BstMAI	GTCTC	3 cut(s)	19, 119, 327
BstMBI	GATC	3 cut(s)	144, 510, 558
BstMWI	GCNNNNNNNGC	4 cut(s)	183, 377, 401, 488
BstSCI	CCNGG	2 cut(s)	298, 299
BstV1I	GCAGC	5 cut(s)	43, 65, 181, 407, 500
BstZ17I	GTATAC	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	63
Cac8I	GCNNGC	2 cut(s)	61, 175
CciI	TCATGA	1 cut(s)	133
Cfr10I	RCCGGY	1 cut(s)	59
Cfr9I	CCCGGG	1 cut(s)	299
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	2 cut(s)	420, 522
CviAII	CATG	6 cut(s)	101, 134, 152, 191, 219, 385
CviQI	GTAC	2 cut(s)	420, 522
DdeI	CTNAG	3 cut(s)	200, 361, 546
DpnI	GATC	3 cut(s)	146, 512, 560
DpnII	GATC	3 cut(s)	144, 510, 558
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco57I	CTGAAG	1 cut(s)	293
Eco88I	CYCGRG	2 cut(s)	249, 299
EcoT22I	ATGCAT	2 cut(s)	373, 390
Esp3I	CGTCTC	1 cut(s)	327
FaeI	CATG	6 cut(s)	104, 137, 155, 194, 222, 388
FatI	CATG	6 cut(s)	100, 133, 151, 190, 218, 384
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	5 cut(s)	54, 57, 195, 396, 489
Fsp4HI	GCNGC	5 cut(s)	54, 57, 195, 396, 489
FspBI	CTAG	2 cut(s)	108, 519
GluI	GCNGC	5 cut(s)	54, 57, 195, 396, 489
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	2 cut(s)	60, 300
HgaI	GACGC	1 cut(s)	344
Hin1II	CATG	6 cut(s)	104, 137, 155, 194, 222, 388
HinfI	GANTC	2 cut(s)	104, 215
HpaII	CCGG	2 cut(s)	60, 300
HphI	GGTGA	3 cut(s)	61, 551, 553
Hpy166II	GTNNAC	3 cut(s)	238, 319, 542
Hpy188I	TCNGA	2 cut(s)	332, 364
Hpy188III	TCNNGA	5 cut(s)	16, 134, 208, 249, 293
Hpy8I	GTNNAC	3 cut(s)	238, 319, 542
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	3 cut(s)	285, 424, 598
HpyCH4V	TGCA	7 cut(s)	11, 78, 197, 371, 388, 395, 530
HpyF10VI	GCNNNNNNNGC	4 cut(s)	183, 377, 401, 488
HpyF3I	CTNAG	3 cut(s)	200, 361, 546
Hsp92II	CATG	6 cut(s)	104, 137, 155, 194, 222, 388
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	144, 510, 558
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	8 cut(s)	52, 73, 126, 150, 159, 306, 313, 479
Lsp1109I	GCAGC	5 cut(s)	43, 65, 181, 407, 500
LweI	GCATC	2 cut(s)	367, 543
MaeI	CTAG	2 cut(s)	108, 519
MaeIII	GTNAC	4 cut(s)	96, 160, 226, 590
MalI	GATC	3 cut(s)	146, 512, 560
MboI	GATC	3 cut(s)	144, 510, 558
MboII	GAAGA	5 cut(s)	269, 349, 425, 562, 578
MluCI	AATT	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	9 cut(s)	18, 21, 83, 161, 245, 297, 338, 441, 472
Mph1103I	ATGCAT	2 cut(s)	373, 390
MroNI	GCCGGC	1 cut(s)	59
MseI	TTAA	1 cut(s)	613
MspA1I	CMGCKG	2 cut(s)	56, 398
MspI	CCGG	2 cut(s)	60, 300
MspR9I	CCNGG	2 cut(s)	300, 301
Mva1269I	GAATGC	1 cut(s)	373
MwoI	GCNNNNNNNGC	4 cut(s)	183, 377, 401, 488
NaeI	GCCGGC	1 cut(s)	61
NciI	CCSGG	2 cut(s)	300, 301
NdeII	GATC	3 cut(s)	144, 510, 558
NgoMIV	GCCGGC	1 cut(s)	59
NlaIII	CATG	6 cut(s)	104, 137, 155, 194, 222, 388
NmuCI	GTSAC	2 cut(s)	96, 160
NsiI	ATGCAT	2 cut(s)	373, 390
PaeR7I	CTCGAG	1 cut(s)	249
PagI	TCATGA	1 cut(s)	133
PctI	GAATGC	1 cut(s)	373
PdiI	GCCGGC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	5 cut(s)	55, 58, 196, 397, 490
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PvuII	CAGCTG	2 cut(s)	56, 398
RsaI	GTAC	2 cut(s)	421, 523
RsaNI	GTAC	2 cut(s)	420, 522
SaqAI	TTAA	1 cut(s)	613
SatI	GCNGC	5 cut(s)	54, 57, 195, 396, 489
Sau3AI	GATC	3 cut(s)	144, 510, 558
ScaI	AGTACT	1 cut(s)	523
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	300, 301
SetI	ASST	6 cut(s)	58, 175, 330, 346, 400, 547
SfaNI	GCATC	2 cut(s)	367, 543
Sfr274I	CTCGAG	1 cut(s)	249
SlaI	CTCGAG	1 cut(s)	249
SmaI	CCCGGG	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
Sse9I	AATT	1 cut(s)	44
SspMI	CTAG	2 cut(s)	108, 519
StyD4I	CCNGG	2 cut(s)	298, 299
TaaI	ACNGT	3 cut(s)	285, 424, 598
TaqI	TCGA	4 cut(s)	17, 250, 426, 436
TasI	AATT	1 cut(s)	44
TatI	WGTACW	2 cut(s)	419, 521
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	613
Tru9I	TTAA	1 cut(s)	613
TseFI	GTSAC	2 cut(s)	96, 160
TseI	GCWGC	5 cut(s)	53, 56, 194, 395, 488
Tsp45I	GTSAC	2 cut(s)	96, 160
TspDTI	ATGAA	2 cut(s)	122, 150
TspGWI	ACGGA	1 cut(s)	37
TspMI	CCCGGG	1 cut(s)	299
XapI	RAATTY	1 cut(s)	44
XhoI	CTCGAG	1 cut(s)	249
XmaI	CCCGGG	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	318
XspI	CTAG	2 cut(s)	108, 519
ZrmI	AGTACT	1 cut(s)	523
Zsp2I	ATGCAT	2 cut(s)	373, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.