AT1G30620

UDP-arabinose 4-epimerase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
10854517 .. 10858280
3764 bp
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UTR
Exon/CDS
Intron
AT1G30620.1

Sequence Viewer

Length: 1260 bp
ATGTTTAGTTTTGGCCGAGCAAGAAGCCAAGGGAGGCAAAACAGATCTATGTCTCTTGGAGGACTGGATTATGCAGACCCCAAGAAGAAAAACAATTACTTGGGAAAGATTCTTTTGACAGCTTCTCTTACAGCCTTGTGCATTTTCATGCTCAAGCAATCTCCAACATTCAATACTCCTAGCGTGTTTTCTCGACATGAGCCAGGGGTTACACATGTTTTGGTCACTGGTGGTGCTGGGTATATTGGTTCACATGCAGCTCTAAGGCTTCTAAAGGAATCATATCGAGTAACCATTGTGGACAATCTATCACGGGGCAATCTCGCTGCAGTCAGGATTTTGCAAGAACTATTTCCGGAACCTGGAAGGCTTCAATTTATTTATGCTGATCTTGGAGATGCCAAAGCTGTCAACAAGATATTCACAGAGAATGCCTTTGACGCTGTGATGCATTTCGCTGCTGTTGCATATGTTGGGGAAAGCACACAATTCCCTCTTAAGTATTATCACAATATTACATCGAACACTTTGGTAGTATTAGAGACAATGGCTGCTCATGGAGTAAAGACTTTGATATATTCAAGCACTTGTGCAACGTATGGGGAGCCTGATATTATGCCAATTACAGAGGAAACTCCTCAGGTGCCAATCAACCCATATGGTAAGGCCAAGAAGATGGCAGAAGATATCATTTTGGATTTCTCGAAAAACTCAGATATGGCAGTTATGATCCTAAGATATTTCAATGTGATTGGGTCCGATCCAGAGGGCAGATTGGGTGAAGCCCCAAGACCTGAGCTGCGAGAGCATGGACGCATCTCCGGTGCTTGTTTTGATGCAGCACGTGGCATCATGCCTGGCCTACAGATCAAAGGAACAGACTACAAAACCGCTGATGGAACTTGCGTACGGGATTACATTGATGTCACTGATTTGGTTGATGCTCATGTTAAAGCTCTTCAAAAGGCAAAACCACGCAAAGTTGGAATCTACAATGTTGGCACCGGGAAAGGTAGCTCGGTGAAAGAGTTTGTTGAGGCGTGCAAGAAAGCAACTGGTGTTGAGATCAAGATCGACTATTTGCCTAGACGTGCAGGTGATTACGCTGAGGTTTACAGTGATCCAAGCAAGATTAGGAAGGAACTTAACTGGACAGCTAAGCACACTAATCTCAAAGAGAGTCTTGAGACTGCATGGAGATGGCAGAAGCTGCACCGTAATGGCTATGGCTTAACAACCTCATCGGTCTCGGTTTACTGA

Protein Analysis

419

Amino Acids

46.31

Weight (kDa)

9.14

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RmlD_sub_bind PF04321 72 - 252 1.2e-10 RmlD substrate binding domain
Epimerase PF01370 73 - 334 5.3e-51 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 73 - 253 4.4e-14 Polysaccharide biosynthesis protein
GDP_Man_Dehyd PF16363 74 - 389 9.1e-53 GDP-mannose 4,6 dehydratase
3Beta_HSD PF01073 74 - 235 7.9e-14 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10 PF13460 77 - 250 8.7e-07 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011714)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1085
Acc36I ACCTGC 1 cut(s) 1085
AccB1I GGYRCC 2 cut(s) 643, 1001
AccIII TCCGGA 1 cut(s) 355
AciI CCGC 1 cut(s) 891
AclWI GGATC 3 cut(s) 724, 755, 1115
AcoI YGGCCR 1 cut(s) 13
AcvI CACGTG 1 cut(s) 845
AfaI GTAC 1 cut(s) 909
AfiI CCNNNNNNNGG 1 cut(s) 362
AflII CTTAAG 1 cut(s) 497
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 5 cut(s) 172, 374, 582, 745, 962
AjiI CACGTC 1 cut(s) 1091
AjnI CCWGG 3 cut(s) 202, 361, 856
AluBI AGCT 8 cut(s) 122, 260, 407, 799, 956, 1017, 1157, 1210
AluI AGCT 8 cut(s) 122, 260, 407, 799, 956, 1017, 1157, 1210
Alw26I GTCTC 4 cut(s) 57, 536, 1181, 1252
AlwI GGATC 3 cut(s) 724, 755, 1115
AlwNI CAGNNNCTG 1 cut(s) 1210
Aor13HI TCCGGA 1 cut(s) 355
AoxI GGCC 3 cut(s) 13, 666, 859
ApeKI GCWGC 7 cut(s) 257, 326, 458, 551, 799, 839, 1210
Asp700I GAANNNNTTC 1 cut(s) 351
AspS9I GGNCC 1 cut(s) 756
AsuC2I CCSGG 1 cut(s) 1006
AsuHPI GGTGA 3 cut(s) 791, 1033, 1109
AvaII GGWCC 1 cut(s) 756
AxyI CCTNAGG 1 cut(s) 639
BanI GGYRCC 2 cut(s) 643, 1001
BbrPI CACGTG 1 cut(s) 845
BbvCI CCTCAGC 1 cut(s) 1107
BbvI GCAGC 7 cut(s) 269, 313, 445, 538, 786, 851, 1197
BccI CCATC 3 cut(s) 670, 890, 1194
BciT130I CCWGG 3 cut(s) 204, 363, 858
BcnI CCSGG 1 cut(s) 1006
BcoDI GTCTC 4 cut(s) 57, 536, 1181, 1252
BfaI CTAG 2 cut(s) 180, 1086
BfmI CTRYAG 2 cut(s) 327, 863
BfrI CTTAAG 1 cut(s) 497
BfuAI ACCTGC 1 cut(s) 1085
BglII AGATCT 1 cut(s) 44
BisI GCNGC 7 cut(s) 258, 327, 459, 552, 800, 840, 1211
BlpI GCTNAGC 1 cut(s) 1158
BlsI GCNGC 7 cut(s) 259, 328, 460, 553, 801, 841, 1212
Bme1390I CCNGG 4 cut(s) 204, 363, 858, 1006
Bme18I GGWCC 1 cut(s) 756
BmgBI CACGTC 1 cut(s) 1091
BmgT120I GGNCC 1 cut(s) 756
BmiI GGNNCC 5 cut(s) 360, 606, 645, 757, 1003
BmrFI CCNGG 4 cut(s) 204, 363, 858, 1006
BmsI GCATC 6 cut(s) 388, 438, 825, 826, 858, 931
Bpu10I CCTNAGC 2 cut(s) 795, 1107
Bpu1102I GCTNAGC 1 cut(s) 1158
BpuEI CTTGAG 2 cut(s) 137, 1205
BpuMI CCSGG 1 cut(s) 1006
BsaAI YACGTR 1 cut(s) 845
BsaBI GATNNNNATC 1 cut(s) 1070
BsaI GGTCTC 1 cut(s) 1252
BsaJI CCNNGG 2 cut(s) 28, 203
BsaWI WCCGGW 2 cut(s) 355, 821
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse1I ACTGG 4 cut(s) 69, 232, 1060, 1154
Bse21I CCTNAGG 1 cut(s) 639
Bse8I GATNNNNATC 1 cut(s) 1070
BseAI TCCGGA 1 cut(s) 355
BseBI CCWGG 3 cut(s) 204, 363, 858
BseDI CCNNGG 2 cut(s) 28, 203
BseJI GATNNNNATC 1 cut(s) 1070
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMII CTCAG 4 cut(s) 653, 726, 786, 1098
BseNI ACTGG 4 cut(s) 69, 232, 1060, 1154
BseRI GAGGAG 1 cut(s) 627
BseXI GCAGC 7 cut(s) 269, 313, 445, 538, 786, 851, 1197
BseYI CCCAGC 1 cut(s) 236
BsgI GTGCAG 2 cut(s) 1113, 1196
BshFI GGCC 3 cut(s) 15, 668, 861
BshNI GGYRCC 2 cut(s) 643, 1001
BsiSI CCGG 3 cut(s) 356, 822, 1005
BsiWI CGTACG 1 cut(s) 907
BslI CCNNNNNNNGG 1 cut(s) 362
BsmAI GTCTC 4 cut(s) 57, 536, 1181, 1252
BsmI GAATGC 1 cut(s) 436
BsnI GGCC 3 cut(s) 15, 668, 861
Bso31I GGTCTC 1 cut(s) 1252
Bsp13I TCCGGA 1 cut(s) 355
Bsp143I GATC 8 cut(s) 44, 388, 729, 760, 867, 1065, 1071, 1120
Bsp1720I GCTNAGC 1 cut(s) 1158
BspACI CCGC 1 cut(s) 891
BspANI GGCC 3 cut(s) 15, 668, 861
BspCNI CTCAG 4 cut(s) 652, 725, 787, 1099
BspEI TCCGGA 1 cut(s) 355
BspLI GGNNCC 5 cut(s) 360, 606, 645, 757, 1003
BspMAI CTGCAG 1 cut(s) 331
BspMI ACCTGC 1 cut(s) 1085
BspPI GGATC 3 cut(s) 724, 755, 1115
BspQI GCTCTTC 1 cut(s) 963
BspT107I GGYRCC 2 cut(s) 643, 1001
BspTI CTTAAG 1 cut(s) 497
BspTNI GGTCTC 1 cut(s) 1252
BsrI ACTGG 4 cut(s) 69, 232, 1060, 1154
BssECI CCNNGG 2 cut(s) 28, 203
BssMI GATC 8 cut(s) 44, 388, 729, 760, 867, 1065, 1071, 1120
BssT1I CCWWGG 1 cut(s) 28
Bst2UI CCWGG 3 cut(s) 204, 363, 858
Bst4CI ACNGT 2 cut(s) 1118, 1217
Bst6I CTCTTC 1 cut(s) 963
BstAFI CTTAAG 1 cut(s) 497
BstAPI GCANNNNNTGC 1 cut(s) 1210
BstBAI YACGTR 1 cut(s) 845
BstC8I GCNNGC 1 cut(s) 1042
BstDEI CTNAG 7 cut(s) 263, 639, 712, 734, 795, 1107, 1158
BstKTI GATC 8 cut(s) 47, 391, 732, 763, 870, 1068, 1074, 1123
BstMAI GTCTC 4 cut(s) 57, 536, 1181, 1252
BstMBI GATC 8 cut(s) 44, 388, 729, 760, 867, 1065, 1071, 1120
BstMWI GCNNNNNNNGC 4 cut(s) 440, 464, 805, 1210
BstNI CCWGG 3 cut(s) 204, 363, 858
BstNSI RCATGY 2 cut(s) 218, 257
BstSCI CCNGG 4 cut(s) 202, 361, 856, 1004
BstSFI CTRYAG 2 cut(s) 327, 863
BstV1I GCAGC 7 cut(s) 269, 313, 445, 538, 786, 851, 1197
BstX2I RGATCY 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 676
BstYI RGATCY 1 cut(s) 44
Bsu36I CCTNAGG 1 cut(s) 639
BsuRI GGCC 3 cut(s) 15, 668, 861
BtrI CACGTC 1 cut(s) 1091
BtsIMutI CAGTG 3 cut(s) 225, 927, 1123
BveI ACCTGC 1 cut(s) 1085
Cac8I GCNNGC 1 cut(s) 1042
CaiI CAGNNNCTG 1 cut(s) 1210
Cfr13I GGNCC 1 cut(s) 756
CseI GACGC 2 cut(s) 449, 822
Csp6I GTAC 1 cut(s) 908
CviAII CATG 9 cut(s) 148, 197, 215, 254, 557, 809, 853, 947, 1194
CviQI GTAC 1 cut(s) 908
DdeI CTNAG 7 cut(s) 263, 639, 712, 734, 795, 1107, 1158
DpnI GATC 8 cut(s) 46, 390, 731, 762, 869, 1067, 1073, 1122
DpnII GATC 8 cut(s) 44, 388, 729, 760, 867, 1065, 1071, 1120
EaeI YGGCCR 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 963
EarI CTCTTC 1 cut(s) 963
Eco130I CCWWGG 1 cut(s) 28
Eco31I GGTCTC 1 cut(s) 1252
Eco32I GATATC 1 cut(s) 688
Eco47I GGWCC 1 cut(s) 756
Eco72I CACGTG 1 cut(s) 845
Eco81I CCTNAGG 1 cut(s) 639
EcoRII CCWGG 3 cut(s) 202, 361, 856
EcoRV GATATC 1 cut(s) 688
EcoT14I CCWWGG 1 cut(s) 28
EcoT22I ATGCAT 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 9 cut(s) 151, 200, 218, 257, 560, 812, 856, 950, 1197
FalI AAGNNNNNCTT 2 cut(s) 1167, 1199
FatI CATG 9 cut(s) 147, 196, 214, 253, 556, 808, 852, 946, 1193
FauNDI CATATG 2 cut(s) 469, 658
Fnu4HI GCNGC 7 cut(s) 258, 327, 459, 552, 800, 840, 1211
Fsp4HI GCNGC 7 cut(s) 258, 327, 459, 552, 800, 840, 1211
FspBI CTAG 2 cut(s) 180, 1086
GluI GCNGC 7 cut(s) 258, 327, 459, 552, 800, 840, 1211
GsaI CCCAGC 1 cut(s) 240
HaeIII GGCC 3 cut(s) 15, 668, 861
HapII CCGG 3 cut(s) 356, 822, 1005
HgaI GACGC 2 cut(s) 449, 822
Hin1II CATG 9 cut(s) 151, 200, 218, 257, 560, 812, 856, 950, 1197
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 4 cut(s) 109, 278, 987, 1180
HpaII CCGG 3 cut(s) 356, 822, 1005
HphI GGTGA 3 cut(s) 791, 1033, 1109
Hpy166II GTNNAC 5 cut(s) 251, 301, 412, 1114, 1255
Hpy188I TCNGA 2 cut(s) 715, 760
Hpy188III TCNNGA 7 cut(s) 192, 334, 356, 703, 764, 1069, 1184
Hpy8I GTNNAC 5 cut(s) 251, 301, 412, 1114, 1255
HpyAV CCTTC 2 cut(s) 360, 1132
HpyCH4III ACNGT 2 cut(s) 1118, 1217
HpyCH4IV ACGT 3 cut(s) 596, 844, 1090
HpyF10VI GCNNNNNNNGC 4 cut(s) 440, 464, 805, 1210
HpyF3I CTNAG 7 cut(s) 263, 639, 712, 734, 795, 1107, 1158
HpySE526I ACGT 3 cut(s) 596, 844, 1090
Hsp92II CATG 9 cut(s) 151, 200, 218, 257, 560, 812, 856, 950, 1197
Kpn2I TCCGGA 1 cut(s) 355
Kzo9I GATC 8 cut(s) 44, 388, 729, 760, 867, 1065, 1071, 1120
LguI GCTCTTC 1 cut(s) 963
LmnI GCTCC 1 cut(s) 604
Lsp1109I GCAGC 7 cut(s) 269, 313, 445, 538, 786, 851, 1197
LweI GCATC 6 cut(s) 388, 438, 825, 826, 858, 931
MaeI CTAG 2 cut(s) 180, 1086
MaeII ACGT 3 cut(s) 596, 844, 1090
MaeIII GTNAC 4 cut(s) 208, 223, 289, 925
MalI GATC 8 cut(s) 46, 390, 731, 762, 869, 1067, 1073, 1122
MboI GATC 8 cut(s) 44, 388, 729, 760, 867, 1065, 1071, 1120
MboII GAAGA 4 cut(s) 97, 685, 695, 950
MflI RGATCY 1 cut(s) 44
MluCI AATT 4 cut(s) 94, 374, 488, 621
MlyI GAGTC 1 cut(s) 1189
MmeI TCCRAC 2 cut(s) 188, 964
MnlI CCTC 9 cut(s) 27, 53, 504, 622, 648, 760, 1030, 1102, 1249
Mph1103I ATGCAT 1 cut(s) 453
MroI TCCGGA 1 cut(s) 355
MroXI GAANNNNTTC 1 cut(s) 351
MseI TTAA 4 cut(s) 498, 951, 1146, 1232
MslI CAYNNNNRTG 3 cut(s) 146, 1198, 1218
MspA1I CMGCKG 1 cut(s) 893
MspCI CTTAAG 1 cut(s) 497
MspI CCGG 3 cut(s) 356, 822, 1005
MspR9I CCNGG 4 cut(s) 204, 363, 858, 1006
Mva1269I GAATGC 1 cut(s) 436
MvaI CCWGG 3 cut(s) 204, 363, 858
MwoI GCNNNNNNNGC 4 cut(s) 440, 464, 805, 1210
NciI CCSGG 1 cut(s) 1006
NdeI CATATG 2 cut(s) 469, 658
NdeII GATC 8 cut(s) 44, 388, 729, 760, 867, 1065, 1071, 1120
NlaIII CATG 9 cut(s) 151, 200, 218, 257, 560, 812, 856, 950, 1197
NlaIV GGNNCC 5 cut(s) 360, 606, 645, 757, 1003
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 2 cut(s) 223, 925
NsiI ATGCAT 1 cut(s) 453
NspI RCATGY 2 cut(s) 218, 257
PaqCI CACCTGC 1 cut(s) 1085
PciI ACATGT 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 963
PctI GAATGC 1 cut(s) 436
PdmI GAANNNNTTC 1 cut(s) 351
PfeI GAWTC 3 cut(s) 109, 278, 987
Pfl23II CGTACG 1 cut(s) 907
PkrI GCNGC 7 cut(s) 259, 328, 460, 553, 801, 841, 1212
PleI GAGTC 1 cut(s) 1188
PmaCI CACGTG 1 cut(s) 845
PmlI CACGTG 1 cut(s) 845
PpsI GAGTC 1 cut(s) 1188
Ppu21I YACGTR 1 cut(s) 845
PscI ACATGT 1 cut(s) 214
Psp6I CCWGG 3 cut(s) 202, 361, 856
PspCI CACGTG 1 cut(s) 845
PspFI CCCAGC 1 cut(s) 236
PspGI CCWGG 3 cut(s) 202, 361, 856
PspLI CGTACG 1 cut(s) 907
PspN4I GGNNCC 5 cut(s) 360, 606, 645, 757, 1003
PspPI GGNCC 1 cut(s) 756
PstI CTGCAG 1 cut(s) 331
PstNI CAGNNNCTG 1 cut(s) 1210
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 1 cut(s) 909
RsaNI GTAC 1 cut(s) 908
RseI CAYNNNNRTG 3 cut(s) 146, 1198, 1218
SapI GCTCTTC 1 cut(s) 963
SaqAI TTAA 4 cut(s) 498, 951, 1146, 1232
SatI GCNGC 7 cut(s) 258, 327, 459, 552, 800, 840, 1211
Sau3AI GATC 8 cut(s) 44, 388, 729, 760, 867, 1065, 1071, 1120
Sau96I GGNCC 1 cut(s) 756
SchI GAGTC 1 cut(s) 1189
ScrFI CCNGG 4 cut(s) 204, 363, 858, 1006
SfaNI GCATC 6 cut(s) 388, 438, 825, 826, 858, 931
SfcI CTRYAG 2 cut(s) 327, 863
SinI GGWCC 1 cut(s) 756
SmiMI CAYNNNNRTG 3 cut(s) 146, 1198, 1218
SmlI CTYRAG 3 cut(s) 152, 497, 1184
SmoI CTYRAG 3 cut(s) 152, 497, 1184
Sse9I AATT 4 cut(s) 94, 374, 488, 621
SsiI CCGC 1 cut(s) 891
SspI AATATT 1 cut(s) 514
SspMI CTAG 2 cut(s) 180, 1086
StyD4I CCNGG 4 cut(s) 202, 361, 856, 1004
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 2 cut(s) 1118, 1217
TaiI ACGT 3 cut(s) 599, 847, 1093
TaqI TCGA 5 cut(s) 193, 286, 521, 704, 1074
TaqII GACCGA 1 cut(s) 1234
TasI AATT 4 cut(s) 94, 374, 488, 621
TfiI GAWTC 3 cut(s) 109, 278, 987
Tru1I TTAA 4 cut(s) 498, 951, 1146, 1232
Tru9I TTAA 4 cut(s) 498, 951, 1146, 1232
TscAI CASTG 3 cut(s) 232, 934, 1123
TseFI GTSAC 2 cut(s) 223, 925
TseI GCWGC 7 cut(s) 257, 326, 458, 551, 799, 839, 1210
Tsp45I GTSAC 2 cut(s) 223, 925
TspDTI ATGAA 1 cut(s) 136
TspRI CASTG 3 cut(s) 232, 934, 1123
Vha464I CTTAAG 1 cut(s) 497
VpaK11BI GGWCC 1 cut(s) 756
XceI RCATGY 2 cut(s) 218, 257
XmnI GAANNNNTTC 1 cut(s) 351
XspI CTAG 2 cut(s) 180, 1086
Zsp2I ATGCAT 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.