Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0011714

Physical Location & Seq

Genomic Coordinates Forward (+)

11172625 .. 11181367

Gene Structure 8743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1127400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGTTCAAGCAGTCACATGATTCTAGCAGTCTCAAAAAGTTCTCTTATCATGAAGCAGGGATCACTCATGTCTTTGTCACAGGAGGAGCTGGCTACATAGGCTCTCATGCTGCACTTAGGCTCTTGAAGGACTCATACCGTGTAACGATAGTGGACAATCTCTCTCGAGGAAACATCGGTGCTGTTAGGGTTCTTCAACAGTTGTTTCCAGAACCCGGGAGGCTTCAGTTCATATACACTGACCTCGGAGATGCAAAAGCTGTCAATAAAATCTTCTCGGAGAATGCATTTGATGCTGTCATGCATTTTGCAGCTGTTGCTTATGTTGGTGAAAGTACACTCGAGCCTCTTCGATACTATCACAATATCACATCAAATACCCTGTTGGTTTTGGAGGCAATGGCAGCACACAATGTAAAAACATTGATCTATTCTAGTACTTGTGCAACTTATGGTGAACCTAGGAAGATGCCGATCACTGAAGAAACCGAGCAAGTCCCAATCAATCCATATGGAAAAGCAAAGAAGATGGCAGAAGATATCATACTAGATTTCTCCAAAAACTCAAACATGGCAGTCATGATCTTACGATATTTTAATGTGATAGGATCAGACCCGGAGGGAAGACTAGGAGAGGCTCCTCGACCTGAGCTACGTGAGCAGGGACGAATATCTGGTGCCTGTTTTGATGCCGCTCGAGGGATTATTCCTGGACTGAAGGTCAGAGGAACAGACTATGATACAGCTGATGGTACTTGTGTGAGGGACTATATTGATGTCACTGACCTGGTGGATGCTCATGTGAAAGCTCTCGCCAATGCAAAACCGGGGAAGGTTGGGATCTACAATGTGGGCACTGGAAGAGGTAGTTCAGTGAAGGAGTTTGTTGAGGCATGCAAGAAGGCAACAGGAGTGGACATAAAGGTTGAATACCTCAGCCGAAGGCCAGGGGACTATGCTAAAGTTTATAGTGATCCTTCCAAGGTAAGGCAGGAGTTGAATTGGACAGCCAAGTACACACTTAAAGAAAGCCTACAGATTGCATGGAGATGGCAAAAATTGCATTTGAATGGCTATGGTCCTTCCAATACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0009058 GO:0009832 GO:0009987 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019322 GO:0019566 GO:0019567 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044238 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046364 GO:0050373 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

365

Amino Acids

40.25

Weight (kDa)

8.78

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	23 - 204	8.8e-12	RmlD substrate binding domain
Epimerase	PF01370	24 - 285	7.5e-50	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	24 - 204	3.6e-12	Polysaccharide biosynthesis protein
GDP_Man_Dehyd	PF16363	25 - 346	1.2e-52	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	26 - 186	1.5e-13	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4	PF07993	26 - 208	5.2e-06	Male sterility protein
NAD_binding_10	PF13460	28 - 201	1.9e-07	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30620 AT1G30620 AT1G30620 AT1G30620 AT1G30620
fragaria_vesca	FvH4_6g39750
malus_domestica	MD17G1127400.v1.1
prunus_persica	Prupe.3G187800_v2.0.a1
pyrus_communis	pycom09g05830
rosa_chinensis	RchiOBHm_Chr2g0153861
rosa_laevigata	RLG00000020734
rosa_multiflora	Rmu_sc0003887.1_g000013
rosa_roxburghii	Rroxscaffold_2G00094700
rosa_rugosa	Rorug02G0442600 Rorug02G0442700.1
rosa_samantha	Rh2AG506500 Rh2BG516400 Rh2CG492200 Rh2DG528600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	677
AccBSI	CCGCTC	1 cut(s)	695
AciI	CCGC	1 cut(s)	693
AclWI	GGATC	4 cut(s)	68, 616, 848, 968
AcuI	CTGAAG	3 cut(s)	209, 501, 737
AfaI	GTAC	4 cut(s)	337, 439, 754, 1016
AfiI	CCNNNNNNNGG	3 cut(s)	215, 699, 987
AgsI	TTSAA	6 cut(s)	7, 127, 197, 929, 1000, 1069
AhdI	GACNNNNNGTC	1 cut(s)	719
AjnI	CCWGG	3 cut(s)	709, 786, 946
AluBI	AGCT	6 cut(s)	89, 260, 314, 652, 746, 809
AluI	AGCT	6 cut(s)	89, 260, 314, 652, 746, 809
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	4 cut(s)	68, 616, 848, 968
Ama87I	CYCGRG	4 cut(s)	165, 215, 341, 696
AoxI	GGCC	1 cut(s)	944
ApeKI	GCWGC	3 cut(s)	110, 311, 404
AspA2I	CCTAGG	1 cut(s)	461
AspS9I	GGNCC	1 cut(s)	1079
AsuC2I	CCSGG	4 cut(s)	216, 217, 617, 828
AsuHPI	GGTGA	2 cut(s)	341, 467
AvaI	CYCGRG	4 cut(s)	165, 215, 341, 696
AvaII	GGWCC	1 cut(s)	1079
AvrII	CCTAGG	1 cut(s)	461
BaeGI	GKGCMC	1 cut(s)	857
BaeI	ACNNNNGTAYC	2 cut(s)	744, 777
BanI	GGYRCC	1 cut(s)	677
BarI	GAAGNNNNNNTAC	4 cut(s)	119, 151, 528, 560
BbsI	GAAGAC	1 cut(s)	631
BbvCI	CCTCAGC	1 cut(s)	935
BbvI	GCAGC	3 cut(s)	97, 323, 416
BccI	CCATC	3 cut(s)	523, 743, 1044
BciT130I	CCWGG	3 cut(s)	711, 788, 948
BcnI	CCSGG	4 cut(s)	216, 217, 617, 828
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	5 cut(s)	24, 435, 462, 548, 629
BfmI	CTRYAG	1 cut(s)	1034
BisI	GCNGC	4 cut(s)	111, 312, 405, 693
BlnI	CCTAGG	1 cut(s)	461
BlsI	GCNGC	4 cut(s)	112, 313, 406, 694
BmcAI	AGTACT	1 cut(s)	439
Bme1390I	CCNGG	7 cut(s)	216, 217, 617, 711, 788, 828, 948
Bme18I	GGWCC	1 cut(s)	1079
BmeRI	GACNNNNNGTC	1 cut(s)	719
BmeT110I	CYCGRG	4 cut(s)	165, 215, 341, 696
BmgT120I	GGNCC	1 cut(s)	1079
BmiI	GGNNCC	2 cut(s)	639, 679
BmrFI	CCNGG	7 cut(s)	216, 217, 617, 711, 788, 828, 948
BmsI	GCATC	5 cut(s)	241, 283, 459, 679, 784
BpiI	GAAGAC	1 cut(s)	631
Bpu10I	CCTNAGC	2 cut(s)	648, 935
BpuMI	CCSGG	4 cut(s)	216, 217, 617, 828
BsaAI	YACGTR	1 cut(s)	656
BsaBI	GATNNNNATC	1 cut(s)	473
BsaJI	CCNNGG	6 cut(s)	215, 244, 461, 827, 947, 981
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 699, 987
Bse1I	ACTGG	1 cut(s)	862
Bse3DI	GCAATG	1 cut(s)	405
Bse8I	GATNNNNATC	1 cut(s)	473
BseBI	CCWGG	3 cut(s)	711, 788, 948
BseDI	CCNNGG	6 cut(s)	215, 244, 461, 827, 947, 981
BseGI	GGATG	1 cut(s)	799
BseJI	GATNNNNATC	1 cut(s)	473
BseLI	CCNNNNNNNGG	3 cut(s)	215, 699, 987
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	639, 949
BseNI	ACTGG	1 cut(s)	862
BseRI	GAGGAG	2 cut(s)	99, 630
BseSI	GKGCMC	1 cut(s)	857
BseXI	GCAGC	3 cut(s)	97, 323, 416
BsgI	GTGCAG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	946
BshNI	GGYRCC	1 cut(s)	677
BsiHKCI	CYCGRG	4 cut(s)	165, 215, 341, 696
BsiSI	CCGG	3 cut(s)	216, 617, 827
BslFI	GGGAC	4 cut(s)	482, 678, 779, 965
BslI	CCNNNNNNNGG	3 cut(s)	215, 699, 987
BsmAI	GTCTC	1 cut(s)	35
BsmFI	GGGAC	4 cut(s)	482, 678, 779, 965
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	946
BsoBI	CYCGRG	4 cut(s)	165, 215, 341, 696
Bsp1286I	GDGCHC	1 cut(s)	857
Bsp143I	GATC	7 cut(s)	60, 426, 474, 582, 608, 840, 973
BspACI	CCGC	1 cut(s)	693
BspANI	GGCC	1 cut(s)	946
BspCNI	CTCAG	2 cut(s)	640, 948
BspHI	TCATGA	2 cut(s)	49, 579
BspLI	GGNNCC	2 cut(s)	639, 679
BspPI	GGATC	4 cut(s)	68, 616, 848, 968
BspT107I	GGYRCC	1 cut(s)	677
BsrBI	CCGCTC	1 cut(s)	695
BsrDI	GCAATG	1 cut(s)	405
BsrI	ACTGG	1 cut(s)	862
BssECI	CCNNGG	6 cut(s)	215, 244, 461, 827, 947, 981
BssMI	GATC	7 cut(s)	60, 426, 474, 582, 608, 840, 973
BssT1I	CCWWGG	2 cut(s)	461, 981
Bst2UI	CCWGG	3 cut(s)	711, 788, 948
Bst4CI	ACNGT	2 cut(s)	140, 201
Bst6I	CTCTTC	2 cut(s)	354, 856
BstAPI	GCANNNNNTGC	3 cut(s)	293, 317, 1060
BstBAI	YACGTR	1 cut(s)	656
BstC8I	GCNNGC	2 cut(s)	91, 895
BstDEI	CTNAG	4 cut(s)	116, 648, 935, 1092
BstF5I	GGATG	1 cut(s)	799
BstKTI	GATC	7 cut(s)	63, 429, 477, 585, 611, 843, 976
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	7 cut(s)	60, 426, 474, 582, 608, 840, 973
BstMWI	GCNNNNNNNGC	6 cut(s)	99, 293, 317, 404, 658, 1060
BstNI	CCWGG	3 cut(s)	711, 788, 948
BstNSI	RCATGY	1 cut(s)	897
BstSCI	CCNGG	7 cut(s)	214, 215, 615, 709, 786, 826, 946
BstSFI	CTRYAG	1 cut(s)	1034
BstSLI	GKGCMC	1 cut(s)	857
BstV1I	GCAGC	3 cut(s)	97, 323, 416
BstV2I	GAAGAC	1 cut(s)	631
BstX2I	RGATCY	1 cut(s)	840
BstYI	RGATCY	1 cut(s)	840
BsuRI	GGCC	1 cut(s)	946
BtsCI	GGATG	1 cut(s)	799
BtsIMutI	CAGTG	5 cut(s)	237, 477, 780, 855, 879
Cac8I	GCNNGC	2 cut(s)	91, 895
CciI	TCATGA	2 cut(s)	49, 579
Cfr13I	GGNCC	1 cut(s)	1079
Cfr9I	CCCGGG	1 cut(s)	215
CsiI	ACCWGGT	1 cut(s)	786
Csp6I	GTAC	4 cut(s)	336, 438, 753, 1015
CspCI	CAANNNNNGTGG	2 cut(s)	894, 929
CviQI	GTAC	4 cut(s)	336, 438, 753, 1015
DdeI	CTNAG	4 cut(s)	116, 648, 935, 1092
DpnI	GATC	7 cut(s)	62, 428, 476, 584, 610, 842, 975
DpnII	GATC	7 cut(s)	60, 426, 474, 582, 608, 840, 973
DriI	GACNNNNNGTC	1 cut(s)	719
Eam1104I	CTCTTC	2 cut(s)	354, 856
Eam1105I	GACNNNNNGTC	1 cut(s)	719
EarI	CTCTTC	2 cut(s)	354, 856
Eco130I	CCWWGG	2 cut(s)	461, 981
Eco32I	GATATC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	1079
Eco57I	CTGAAG	3 cut(s)	209, 501, 737
Eco88I	CYCGRG	4 cut(s)	165, 215, 341, 696
EcoRII	CCWGG	3 cut(s)	709, 786, 946
EcoRV	GATATC	1 cut(s)	541
EcoT14I	CCWWGG	2 cut(s)	461, 981
EcoT22I	ATGCAT	2 cut(s)	289, 306
ErhI	CCWWGG	2 cut(s)	461, 981
FaqI	GGGAC	4 cut(s)	482, 678, 779, 965
FauNDI	CATATG	1 cut(s)	511
Fnu4HI	GCNGC	4 cut(s)	111, 312, 405, 693
FokI	GGATG	1 cut(s)	806
Fsp4HI	GCNGC	4 cut(s)	111, 312, 405, 693
FspBI	CTAG	5 cut(s)	24, 435, 462, 548, 629
GluI	GCNGC	4 cut(s)	111, 312, 405, 693
HaeIII	GGCC	1 cut(s)	946
HapII	CCGG	3 cut(s)	216, 617, 827
HinfI	GANTC	2 cut(s)	20, 131
HpaII	CCGG	3 cut(s)	216, 617, 827
HphI	GGTGA	2 cut(s)	341, 467
Hpy166II	GTNNAC	5 cut(s)	154, 338, 458, 916, 1017
Hpy188I	TCNGA	4 cut(s)	248, 280, 613, 725
Hpy188III	TCNNGA	5 cut(s)	50, 124, 165, 209, 580
Hpy8I	GTNNAC	5 cut(s)	154, 338, 458, 916, 1017
HpyAV	CCTTC	8 cut(s)	121, 712, 826, 871, 895, 936, 987, 1092
HpyCH4III	ACNGT	2 cut(s)	140, 201
HpyCH4IV	ACGT	1 cut(s)	655
HpyF10VI	GCNNNNNNNGC	6 cut(s)	99, 293, 317, 404, 658, 1060
HpyF3I	CTNAG	4 cut(s)	116, 648, 935, 1092
HpySE526I	ACGT	1 cut(s)	655
Kzo9I	GATC	7 cut(s)	60, 426, 474, 582, 608, 840, 973
LmnI	GCTCC	2 cut(s)	86, 643
Lsp1109I	GCAGC	3 cut(s)	97, 323, 416
LweI	GCATC	5 cut(s)	241, 283, 459, 679, 784
MabI	ACCWGGT	1 cut(s)	786
MaeI	CTAG	5 cut(s)	24, 435, 462, 548, 629
MaeII	ACGT	1 cut(s)	655
MaeIII	GTNAC	4 cut(s)	12, 76, 142, 778
MalI	GATC	7 cut(s)	62, 428, 476, 584, 610, 842, 975
MbiI	CCGCTC	1 cut(s)	695
MboI	GATC	7 cut(s)	60, 426, 474, 582, 608, 840, 973
MboII	GAAGA	9 cut(s)	185, 265, 341, 478, 494, 538, 548, 636, 873
MflI	RGATCY	1 cut(s)	840
MhlI	GDGCHC	1 cut(s)	857
MluCI	AATT	2 cut(s)	1000, 1058
MlyI	GAGTC	1 cut(s)	125
Mph1103I	ATGCAT	2 cut(s)	289, 306
MseI	TTAA	2 cut(s)	597, 1023
MslI	CAYNNNNRTG	2 cut(s)	1048, 1068
MspA1I	CMGCKG	2 cut(s)	314, 746
MspI	CCGG	3 cut(s)	216, 617, 827
MspR9I	CCNGG	7 cut(s)	216, 217, 617, 711, 788, 828, 948
Mva1269I	GAATGC	1 cut(s)	289
MvaI	CCWGG	3 cut(s)	711, 788, 948
MwoI	GCNNNNNNNGC	6 cut(s)	99, 293, 317, 404, 658, 1060
NciI	CCSGG	4 cut(s)	216, 217, 617, 828
NdeI	CATATG	1 cut(s)	511
NdeII	GATC	7 cut(s)	60, 426, 474, 582, 608, 840, 973
NlaIV	GGNNCC	2 cut(s)	639, 679
NmuCI	GTSAC	3 cut(s)	12, 76, 778
NsiI	ATGCAT	2 cut(s)	289, 306
NspI	RCATGY	1 cut(s)	897
PaeI	GCATGC	1 cut(s)	897
PaeR7I	CTCGAG	3 cut(s)	165, 341, 696
PagI	TCATGA	2 cut(s)	49, 579
PctI	GAATGC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	20
PfoI	TCCNGGA	1 cut(s)	709
PkrI	GCNGC	4 cut(s)	112, 313, 406, 694
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Ppu21I	YACGTR	1 cut(s)	656
Psp6I	CCWGG	3 cut(s)	709, 786, 946
PspGI	CCWGG	3 cut(s)	709, 786, 946
PspN4I	GGNNCC	2 cut(s)	639, 679
PspPI	GGNCC	1 cut(s)	1079
PspXI	VCTCGAGB	2 cut(s)	341, 696
PsuI	RGATCY	1 cut(s)	840
PvuII	CAGCTG	2 cut(s)	314, 746
RsaI	GTAC	4 cut(s)	337, 439, 754, 1016
RsaNI	GTAC	4 cut(s)	336, 438, 753, 1015
RseI	CAYNNNNRTG	2 cut(s)	1048, 1068
SaqAI	TTAA	2 cut(s)	597, 1023
SatI	GCNGC	4 cut(s)	111, 312, 405, 693
Sau3AI	GATC	7 cut(s)	60, 426, 474, 582, 608, 840, 973
Sau96I	GGNCC	1 cut(s)	1079
ScaI	AGTACT	1 cut(s)	439
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	7 cut(s)	216, 217, 617, 711, 788, 828, 948
SduI	GDGCHC	1 cut(s)	857
SexAI	ACCWGGT	1 cut(s)	786
SfaNI	GCATC	5 cut(s)	241, 283, 459, 679, 784
SfcI	CTRYAG	1 cut(s)	1034
Sfr274I	CTCGAG	3 cut(s)	165, 341, 696
SinI	GGWCC	1 cut(s)	1079
SlaI	CTCGAG	3 cut(s)	165, 341, 696
SmaI	CCCGGG	1 cut(s)	217
SmiMI	CAYNNNNRTG	2 cut(s)	1048, 1068
SmlI	CTYRAG	3 cut(s)	165, 341, 696
SmoI	CTYRAG	3 cut(s)	165, 341, 696
SphI	GCATGC	1 cut(s)	897
Sse9I	AATT	2 cut(s)	1000, 1058
SsiI	CCGC	1 cut(s)	693
SspMI	CTAG	5 cut(s)	24, 435, 462, 548, 629
StyD4I	CCNGG	7 cut(s)	214, 215, 615, 709, 786, 826, 946
StyI	CCWWGG	2 cut(s)	461, 981
TaaI	ACNGT	2 cut(s)	140, 201
TaiI	ACGT	1 cut(s)	658
TaqI	TCGA	5 cut(s)	166, 342, 352, 643, 697
TasI	AATT	2 cut(s)	1000, 1058
TatI	WGTACW	3 cut(s)	335, 437, 1014
TauI	GCSGC	1 cut(s)	695
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	2 cut(s)	597, 1023
Tru9I	TTAA	2 cut(s)	597, 1023
TscAI	CASTG	5 cut(s)	244, 484, 787, 862, 879
TseFI	GTSAC	3 cut(s)	12, 76, 778
TseI	GCWGC	3 cut(s)	110, 311, 404
Tsp45I	GTSAC	3 cut(s)	12, 76, 778
TspDTI	ATGAA	2 cut(s)	66, 220
TspMI	CCCGGG	1 cut(s)	215
TspRI	CASTG	5 cut(s)	244, 484, 787, 862, 879
VpaK11BI	GGWCC	1 cut(s)	1079
XceI	RCATGY	1 cut(s)	897
XhoI	CTCGAG	3 cut(s)	165, 341, 696
XmaI	CCCGGG	1 cut(s)	215
XmaJI	CCTAGG	1 cut(s)	461
XspI	CTAG	5 cut(s)	24, 435, 462, 548, 629
ZrmI	AGTACT	1 cut(s)	439
Zsp2I	ATGCAT	2 cut(s)	289, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.