Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003887.1

Orthogroup ID

OG0011714

Physical Location & Seq

Genomic Coordinates Forward (+)

56313 .. 58580

Gene Structure 2268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003887.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

atggattttgcagactcgaaacgaaggggcaatgttccaggcagatttttggcagctgcagtcctcattactgtttgcattttcgtctacaagcagtcacttaactccagcaatgaacgcaacctgttctcttatcacgaagcaggagtaacacatgtattggttactggaggtgctggctacataggctctcatgctgcacttaggctgctgaaggattcataccgtgtaaccatagtggataatctttctcgaggaaatattggtgctgttaggattcttcagcagttatttccagaacctgggaggcttcagtttgttaaagctgacctgggagatgcaaaagctgtcaataaaatcttctcagaaaatgcatttgatgctgttatgcattttgcagctgttgcttatgttggtgaaagtacacttgaacctcttaggtattatcataatatcacatcaaatactctattggttttggaggcaatggcagcacacaatgtaaagacattgatctattctagtacttgtgccacatacggtgaacccaagacaatgccgattacggaagaaactaagcaagttccaatcaatccatatggaaaagccaagaagatggcagaagatatcatactggatttctccaaaaactcaaacatggcagtcatgatcttacgatattttaatgttataggatcagatcctgagggaagattaggagaggctcctcgtcctgagctacgtgagcagggccgaatatctggagcttgttttgatgcagctcgaggaattatttctggactgaaggtcagaggaatagattatgcgacacccgatggcacttgcgtgagggactatattgatgtcactgacctggttgatgctcatgtaaaagctcttgccaacgcacagccaagtaaagttggcatctacaatgtgggaactggaaaaggtagttcagtgaaggagtttgtggaagcatgtaagaaggcgacaggggcagatatcaaggtcgaatatctaggtcgaaggccaggggattatgctaaagtttatagtgatccttccaagataaggaaagagttaaactggacggctcagcacacaaatcttctacagagcctacagacagcatggagatggcaaaaaaaacatttcaacggttatggttctttaaatattatggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0009058 GO:0009832 GO:0009987 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019322 GO:0019566 GO:0019567 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044238 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046364 GO:0050373 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

396

Amino Acids

43.54

Weight (kDa)

9.12

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30620 AT1G30620 AT1G30620 AT1G30620 AT1G30620
fragaria_vesca	FvH4_6g39750
malus_domestica	MD17G1127400.v1.1
prunus_persica	Prupe.3G187800_v2.0.a1
pyrus_communis	pycom09g05830
rosa_chinensis	RchiOBHm_Chr2g0153861
rosa_laevigata	RLG00000020734
rosa_multiflora	Rmu_sc0003887.1_g000013
rosa_roxburghii	Rroxscaffold_2G00094700
rosa_rugosa	Rorug02G0442600 Rorug02G0442700.1
rosa_samantha	Rh2AG506500 Rh2BG516400 Rh2CG492200 Rh2DG528600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	87
AclWI	GGATC	3 cut(s)	695, 703, 1055
AcuI	CTGAAG	4 cut(s)	233, 266, 296, 824
AfaI	GTAC	2 cut(s)	424, 526
AfiI	CCNNNNNNNGG	2 cut(s)	302, 1074
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	431, 1159
AhdI	GACNNNNNGTC	1 cut(s)	806
AjnI	CCWGG	5 cut(s)	37, 301, 330, 873, 1033
AleI	CACNNNNGTG	1 cut(s)	845
AluBI	AGCT	8 cut(s)	56, 326, 347, 401, 739, 767, 782, 896
AluI	AGCT	8 cut(s)	56, 326, 347, 401, 739, 767, 782, 896
AlwI	GGATC	3 cut(s)	695, 703, 1055
AlwNI	CAGNNNCTG	2 cut(s)	302, 704
Ama87I	CYCGRG	2 cut(s)	252, 783
AoxI	GGCC	2 cut(s)	751, 1031
ApeKI	GCWGC	7 cut(s)	53, 56, 197, 208, 398, 491, 779
Asp700I	GAANNNNTTC	1 cut(s)	793
AspS9I	GGNCC	1 cut(s)	751
AsuHPI	GGTGA	2 cut(s)	428, 554
AvaI	CYCGRG	2 cut(s)	252, 783
AxyI	CCTNAGG	1 cut(s)	705
BarI	GAAGNNNNNNTAC	4 cut(s)	206, 238, 615, 647
BbvI	GCAGC	7 cut(s)	43, 65, 184, 195, 410, 503, 791
BccI	CCATC	3 cut(s)	610, 830, 1134
BceAI	ACGGC	1 cut(s)	1110
BciT130I	CCWGG	5 cut(s)	39, 303, 332, 875, 1035
BfaI	CTAG	2 cut(s)	522, 1022
BfmI	CTRYAG	3 cut(s)	57, 1115, 1124
BisI	GCNGC	7 cut(s)	54, 57, 198, 209, 399, 492, 780
BlpI	GCTNAGC	1 cut(s)	1098
BlsI	GCNGC	7 cut(s)	55, 58, 199, 210, 400, 493, 781
BmcAI	AGTACT	1 cut(s)	526
Bme1390I	CCNGG	5 cut(s)	39, 303, 332, 875, 1035
BmeRI	GACNNNNNGTC	1 cut(s)	806
BmeT110I	CYCGRG	2 cut(s)	252, 783
BmgT120I	GGNCC	1 cut(s)	751
BmiI	GGNNCC	1 cut(s)	726
BmrFI	CCNGG	5 cut(s)	39, 303, 332, 875, 1035
BmsI	GCATC	5 cut(s)	328, 370, 766, 871, 936
BpmI	CTGGAG	3 cut(s)	91, 189, 783
Bpu10I	CCTNAGC	1 cut(s)	735
Bpu1102I	GCTNAGC	1 cut(s)	1098
BsaAI	YACGTR	1 cut(s)	743
BsaJI	CCNNGG	3 cut(s)	302, 331, 1034
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 1074
Bse1I	ACTGG	4 cut(s)	172, 639, 949, 1094
Bse21I	CCTNAGG	1 cut(s)	705
Bse3DI	GCAATG	3 cut(s)	37, 118, 492
BseBI	CCWGG	5 cut(s)	39, 303, 332, 875, 1035
BseDI	CCNNGG	3 cut(s)	302, 331, 1034
BseLI	CCNNNNNNNGG	2 cut(s)	302, 1074
BseMI	GCAATG	3 cut(s)	37, 118, 492
BseMII	CTCAG	4 cut(s)	378, 696, 726, 1112
BseNI	ACTGG	4 cut(s)	172, 639, 949, 1094
BseRI	GAGGAG	1 cut(s)	717
BseXI	GCAGC	7 cut(s)	43, 65, 184, 195, 410, 503, 791
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	753, 1033
BsiHKCI	CYCGRG	2 cut(s)	252, 783
BslFI	GGGAC	1 cut(s)	866
BslI	CCNNNNNNNGG	2 cut(s)	302, 1074
BsmFI	GGGAC	1 cut(s)	866
BsnI	GGCC	2 cut(s)	753, 1033
BsoBI	CYCGRG	2 cut(s)	252, 783
Bsp143I	GATC	5 cut(s)	513, 669, 695, 700, 1060
Bsp1720I	GCTNAGC	1 cut(s)	1098
BspANI	GGCC	2 cut(s)	753, 1033
BspCNI	CTCAG	4 cut(s)	377, 697, 727, 1111
BspHI	TCATGA	1 cut(s)	666
BspLI	GGNNCC	1 cut(s)	726
BspMAI	CTGCAG	1 cut(s)	61
BspPI	GGATC	3 cut(s)	695, 703, 1055
BsrDI	GCAATG	3 cut(s)	37, 118, 492
BsrI	ACTGG	4 cut(s)	172, 639, 949, 1094
BssECI	CCNNGG	3 cut(s)	302, 331, 1034
BssMI	GATC	5 cut(s)	513, 669, 695, 700, 1060
Bst2UI	CCWGG	5 cut(s)	39, 303, 332, 875, 1035
Bst4CI	ACNGT	4 cut(s)	73, 227, 542, 1163
BstAPI	GCANNNNNTGC	2 cut(s)	380, 404
BstBAI	YACGTR	1 cut(s)	743
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	7 cut(s)	203, 364, 437, 576, 705, 735, 1098
BstKTI	GATC	5 cut(s)	516, 672, 698, 703, 1063
BstMBI	GATC	5 cut(s)	513, 669, 695, 700, 1060
BstMWI	GCNNNNNNNGC	7 cut(s)	117, 186, 380, 404, 491, 745, 998
BstNI	CCWGG	5 cut(s)	39, 303, 332, 875, 1035
BstNSI	RCATGY	2 cut(s)	158, 984
BstSCI	CCNGG	5 cut(s)	37, 301, 330, 873, 1033
BstSFI	CTRYAG	3 cut(s)	57, 1115, 1124
BstV1I	GCAGC	7 cut(s)	43, 65, 184, 195, 410, 503, 791
BstX2I	RGATCY	1 cut(s)	700
BstXI	CCANNNNNNTGG	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	700
Bsu36I	CCTNAGG	1 cut(s)	705
BsuRI	GGCC	2 cut(s)	753, 1033
BtsIMutI	CAGTG	2 cut(s)	867, 966
Cac8I	GCNNGC	1 cut(s)	178
CaiI	CAGNNNCTG	2 cut(s)	302, 704
CciI	TCATGA	1 cut(s)	666
Cfr13I	GGNCC	1 cut(s)	751
CsiI	ACCWGGT	1 cut(s)	873
Csp6I	GTAC	2 cut(s)	423, 525
CviAII	CATG	7 cut(s)	155, 194, 658, 667, 887, 981, 1134
CviQI	GTAC	2 cut(s)	423, 525
DdeI	CTNAG	7 cut(s)	203, 364, 437, 576, 705, 735, 1098
DpnI	GATC	5 cut(s)	515, 671, 697, 702, 1062
DpnII	GATC	5 cut(s)	513, 669, 695, 700, 1060
DraI	TTTAAA	1 cut(s)	1176
DriI	GACNNNNNGTC	1 cut(s)	806
Eam1105I	GACNNNNNGTC	1 cut(s)	806
Eco32I	GATATC	2 cut(s)	628, 1006
Eco57I	CTGAAG	4 cut(s)	233, 266, 296, 824
Eco81I	CCTNAGG	1 cut(s)	705
Eco88I	CYCGRG	2 cut(s)	252, 783
EcoRII	CCWGG	5 cut(s)	37, 301, 330, 873, 1033
EcoRV	GATATC	2 cut(s)	628, 1006
EcoT22I	ATGCAT	2 cut(s)	376, 393
FaeI	CATG	7 cut(s)	158, 197, 661, 670, 890, 984, 1137
FaqI	GGGAC	1 cut(s)	866
FatI	CATG	7 cut(s)	154, 193, 657, 666, 886, 980, 1133
FauNDI	CATATG	1 cut(s)	598
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	7 cut(s)	54, 57, 198, 209, 399, 492, 780
Fsp4HI	GCNGC	7 cut(s)	54, 57, 198, 209, 399, 492, 780
FspBI	CTAG	2 cut(s)	522, 1022
GluI	GCNGC	7 cut(s)	54, 57, 198, 209, 399, 492, 780
GsuI	CTGGAG	3 cut(s)	91, 189, 783
HaeIII	GGCC	2 cut(s)	753, 1033
Hin1II	CATG	7 cut(s)	158, 197, 661, 670, 890, 984, 1137
HinfI	GANTC	3 cut(s)	14, 218, 277
HphI	GGTGA	2 cut(s)	428, 554
Hpy166II	GTNNAC	3 cut(s)	88, 425, 545
Hpy188I	TCNGA	3 cut(s)	367, 700, 812
Hpy188III	TCNNGA	8 cut(s)	137, 252, 296, 667, 704, 734, 762, 798
Hpy8I	GTNNAC	3 cut(s)	88, 425, 545
HpyAV	CCTTC	7 cut(s)	18, 208, 799, 958, 982, 1023, 1074
HpyCH4III	ACNGT	4 cut(s)	73, 227, 542, 1163
HpyCH4IV	ACGT	1 cut(s)	742
HpyCH4V	TGCA	9 cut(s)	11, 59, 78, 200, 341, 374, 391, 398, 779
HpyF10VI	GCNNNNNNNGC	7 cut(s)	117, 186, 380, 404, 491, 745, 998
HpyF3I	CTNAG	7 cut(s)	203, 364, 437, 576, 705, 735, 1098
HpySE526I	ACGT	1 cut(s)	742
Hsp92II	CATG	7 cut(s)	158, 197, 661, 670, 890, 984, 1137
Kzo9I	GATC	5 cut(s)	513, 669, 695, 700, 1060
LmnI	GCTCC	2 cut(s)	730, 764
Lsp1109I	GCAGC	7 cut(s)	43, 65, 184, 195, 410, 503, 791
LweI	GCATC	5 cut(s)	328, 370, 766, 871, 936
MabI	ACCWGGT	1 cut(s)	873
MaeI	CTAG	2 cut(s)	522, 1022
MaeII	ACGT	1 cut(s)	742
MaeIII	GTNAC	5 cut(s)	96, 148, 163, 229, 865
MalI	GATC	5 cut(s)	515, 671, 697, 702, 1062
MboI	GATC	5 cut(s)	513, 669, 695, 700, 1060
MboII	GAAGA	7 cut(s)	272, 352, 581, 625, 635, 723, 1103
MflI	RGATCY	1 cut(s)	700
MluCI	AATT	1 cut(s)	789
MlyI	GAGTC	1 cut(s)	8
Mph1103I	ATGCAT	2 cut(s)	376, 393
MroXI	GAANNNNTTC	1 cut(s)	793
MseI	TTAA	5 cut(s)	102, 321, 684, 1085, 1175
MslI	CAYNNNNRTG	2 cut(s)	845, 1138
MspA1I	CMGCKG	2 cut(s)	56, 401
MspR9I	CCNGG	5 cut(s)	39, 303, 332, 875, 1035
MvaI	CCWGG	5 cut(s)	39, 303, 332, 875, 1035
MwoI	GCNNNNNNNGC	7 cut(s)	117, 186, 380, 404, 491, 745, 998
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	5 cut(s)	513, 669, 695, 700, 1060
NlaIII	CATG	7 cut(s)	158, 197, 661, 670, 890, 984, 1137
NlaIV	GGNNCC	1 cut(s)	726
NmuCI	GTSAC	2 cut(s)	96, 865
NsiI	ATGCAT	2 cut(s)	376, 393
NspI	RCATGY	2 cut(s)	158, 984
OliI	CACNNNNGTG	1 cut(s)	845
PaeR7I	CTCGAG	2 cut(s)	252, 783
PagI	TCATGA	1 cut(s)	666
PciI	ACATGT	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	793
PfeI	GAWTC	2 cut(s)	218, 277
PflMI	CCANNNNNTGG	1 cut(s)	302
PkrI	GCNGC	7 cut(s)	55, 58, 199, 210, 400, 493, 781
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
Ppu21I	YACGTR	1 cut(s)	743
PscI	ACATGT	1 cut(s)	154
Psp6I	CCWGG	5 cut(s)	37, 301, 330, 873, 1033
PspGI	CCWGG	5 cut(s)	37, 301, 330, 873, 1033
PspN4I	GGNNCC	1 cut(s)	726
PspPI	GGNCC	1 cut(s)	751
PspXI	VCTCGAGB	1 cut(s)	783
PstI	CTGCAG	1 cut(s)	61
PstNI	CAGNNNCTG	2 cut(s)	302, 704
PsuI	RGATCY	1 cut(s)	700
PvuII	CAGCTG	2 cut(s)	56, 401
RsaI	GTAC	2 cut(s)	424, 526
RsaNI	GTAC	2 cut(s)	423, 525
RseI	CAYNNNNRTG	2 cut(s)	845, 1138
SaqAI	TTAA	5 cut(s)	102, 321, 684, 1085, 1175
SatI	GCNGC	7 cut(s)	54, 57, 198, 209, 399, 492, 780
Sau3AI	GATC	5 cut(s)	513, 669, 695, 700, 1060
Sau96I	GGNCC	1 cut(s)	751
ScaI	AGTACT	1 cut(s)	526
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	5 cut(s)	39, 303, 332, 875, 1035
SexAI	ACCWGGT	1 cut(s)	873
SfaNI	GCATC	5 cut(s)	328, 370, 766, 871, 936
SfcI	CTRYAG	3 cut(s)	57, 1115, 1124
Sfr274I	CTCGAG	2 cut(s)	252, 783
SlaI	CTCGAG	2 cut(s)	252, 783
SmiMI	CAYNNNNRTG	2 cut(s)	845, 1138
SmlI	CTYRAG	2 cut(s)	252, 783
SmoI	CTYRAG	2 cut(s)	252, 783
Sse9I	AATT	1 cut(s)	789
SspI	AATATT	2 cut(s)	262, 1180
SspMI	CTAG	2 cut(s)	522, 1022
StyD4I	CCNGG	5 cut(s)	37, 301, 330, 873, 1033
TaaI	ACNGT	4 cut(s)	73, 227, 542, 1163
TaiI	ACGT	1 cut(s)	745
TaqI	TCGA	5 cut(s)	17, 253, 784, 1014, 1027
TasI	AATT	1 cut(s)	789
TatI	WGTACW	2 cut(s)	422, 524
TfiI	GAWTC	2 cut(s)	218, 277
Tru1I	TTAA	5 cut(s)	102, 321, 684, 1085, 1175
Tru9I	TTAA	5 cut(s)	102, 321, 684, 1085, 1175
TscAI	CASTG	2 cut(s)	874, 966
TseFI	GTSAC	2 cut(s)	96, 865
TseI	GCWGC	7 cut(s)	53, 56, 197, 208, 398, 491, 779
Tsp45I	GTSAC	2 cut(s)	96, 865
TspDTI	ATGAA	2 cut(s)	129, 210
TspGWI	ACGGA	1 cut(s)	581
TspRI	CASTG	2 cut(s)	874, 966
Van91I	CCANNNNNTGG	1 cut(s)	302
XceI	RCATGY	2 cut(s)	158, 984
XhoI	CTCGAG	2 cut(s)	252, 783
XmiI	GTMKAC	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	793
XspI	CTAG	2 cut(s)	522, 1022
ZrmI	AGTACT	1 cut(s)	526
Zsp2I	ATGCAT	2 cut(s)	376, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.