Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0011714

Physical Location & Seq

Genomic Coordinates Forward (+)

4337712 .. 4339803

Gene Structure 2092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g05830.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGATATTGCAGACTCGAAACGAAGGAGCAAATTCTCCGGCAAGATTTTCGCAGCAGCCGGCCTAATCACCCTCTGCATTGTCTTGTTCAAGCAGTCACATGATTCTAGCAGTCCCAACAAGTCCTTCTCTTATCATGAAGCAGGGATCACGCATGTCTTGGTCACAGGAGGTGCTGGTTACATAGGCTCTCATGCTGCACTTAGGCTTTTGAAGGACTCATACCGTGTAACGATAGTGGACAATCTTTCTCGAGGAAACATCGGTGCTGTTAGGGTTCTTCAACAGTTGTTTCCAGAACCCGGGAGGCTGCAATTCATATACGCTGACCTCGGAGATGCAAAAGCTGTCAATAAGATCTTCTCAGAGAATGCATTTGATGCTGTCATGCATTTTGCAGCTGTTGCTTATGTTGGTGAAAGTACACTCGAGCCCCTTCGATACTATCACAATATCACATCAAATACCCTCTTGGTTTTGGAGGCAATGGCAGCACACAATGTAAAAACATTGATCTATTCCAGTACTTGTGCCACTTATGGTGAACCTGAGAAGATGCCGATCACCGAAGAAACCGAGCAAGTCCCAATCAATCCATATGGAAAAGCAAAGAAGATGGCAGAAGATATCATACTAGATTTCTCCAAAAACTCAAACATGGCAGTCATGATCTTACGATATTTTAATGTGATAGGATCAGACCCTGAGGGAAGACTAGGAGAGGCTCCTCGACCTGAGCTACGTGAGCAGGGACGAATCTCTGGTGCCTGTTTTGATGCCGCTCGAGGGATTATTCCTGGACTGAAGGTCAGAGGAACAGACTATGAAACAGCTGATGGCACTTGTGTGAGGGACTATATAGATGTCACTGACCTGGTTGATGCTCATGTAAAAGCTCTCGCCAACGCACAACCTGGGAAGGTTGGGATCTACAATGTCGGCACTGGAAAAGGTAGTTCAGTGAAGGAATTTGTTGAGGCATGCAAGAAGGCGACAGGGGTGGACATAAAGGTTGATTACCTCGACCGAAGGCCAGGGGACTATGCTAAAGTTTATAGTGATCCTTCCAAGGTAAGGCAGGAGCTGAATTGGACAGCCCACTACACACTTCAAGAGAGCCTGCAGATTGCATGGAGATGGCAAAAATCGCATTTGAATGGCTATGGTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0009058 GO:0009832 GO:0009987 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019322 GO:0019566 GO:0019567 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044238 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046364 GO:0050373 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

391

Amino Acids

42.87

Weight (kDa)

7.65

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30620 AT1G30620 AT1G30620 AT1G30620 AT1G30620
fragaria_vesca	FvH4_6g39750
malus_domestica	MD17G1127400.v1.1
prunus_persica	Prupe.3G187800_v2.0.a1
pyrus_communis	pycom09g05830
rosa_chinensis	RchiOBHm_Chr2g0153861
rosa_laevigata	RLG00000020734
rosa_multiflora	Rmu_sc0003887.1_g000013
rosa_roxburghii	Rroxscaffold_2G00094700
rosa_rugosa	Rorug02G0442600 Rorug02G0442700.1
rosa_samantha	Rh2AG506500 Rh2BG516400 Rh2CG492200 Rh2DG528600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	764
AccBSI	CCGCTC	1 cut(s)	782
AciI	CCGC	1 cut(s)	780
AclWI	GGATC	4 cut(s)	155, 703, 935, 1055
AcsI	RAATTY	2 cut(s)	32, 968
AcuI	CTGAAG	1 cut(s)	824
AfaI	GTAC	2 cut(s)	424, 526
AfiI	CCNNNNNNNGG	3 cut(s)	302, 786, 1074
AgsI	TTSAA	5 cut(s)	91, 214, 284, 1112, 1156
AhdI	GACNNNNNGTC	1 cut(s)	806
AjnI	CCWGG	4 cut(s)	796, 873, 913, 1033
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AleI	CACNNNNGTG	1 cut(s)	845
AluBI	AGCT	6 cut(s)	347, 401, 739, 833, 896, 1084
AluI	AGCT	6 cut(s)	347, 401, 739, 833, 896, 1084
AlwI	GGATC	4 cut(s)	155, 703, 935, 1055
AlwNI	CAGNNNCTG	2 cut(s)	704, 1084
Ama87I	CYCGRG	4 cut(s)	252, 302, 428, 783
AoxI	GGCC	2 cut(s)	61, 1031
ApeKI	GCWGC	6 cut(s)	53, 56, 197, 310, 398, 491
ApoI	RAATTY	2 cut(s)	32, 968
AspS9I	GGNCC	1 cut(s)	1166
AsuC2I	CCSGG	2 cut(s)	303, 304
AsuHPI	GGTGA	4 cut(s)	61, 428, 554, 556
AvaI	CYCGRG	4 cut(s)	252, 302, 428, 783
AvaII	GGWCC	1 cut(s)	1166
AxyI	CCTNAGG	1 cut(s)	705
BanI	GGYRCC	1 cut(s)	764
BanII	GRGCYC	1 cut(s)	435
BarI	GAAGNNNNNNTAC	4 cut(s)	206, 238, 615, 647
BbsI	GAAGAC	1 cut(s)	718
BbvI	GCAGC	6 cut(s)	65, 68, 184, 297, 410, 503
BccI	CCATC	3 cut(s)	610, 830, 1131
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	4 cut(s)	798, 875, 915, 1035
BcnI	CCSGG	2 cut(s)	303, 304
BfaI	CTAG	3 cut(s)	108, 635, 716
BfmI	CTRYAG	1 cut(s)	1121
BglII	AGATCT	1 cut(s)	357
BisI	GCNGC	7 cut(s)	54, 57, 198, 311, 399, 492, 780
BlsI	GCNGC	7 cut(s)	55, 58, 199, 312, 400, 493, 781
BmcAI	AGTACT	1 cut(s)	526
Bme1390I	CCNGG	6 cut(s)	303, 304, 798, 875, 915, 1035
Bme18I	GGWCC	1 cut(s)	1166
BmeRI	GACNNNNNGTC	1 cut(s)	806
BmeT110I	CYCGRG	4 cut(s)	252, 302, 428, 783
BmgT120I	GGNCC	1 cut(s)	1166
BmiI	GGNNCC	2 cut(s)	726, 766
BmrFI	CCNGG	6 cut(s)	303, 304, 798, 875, 915, 1035
BmsI	GCATC	5 cut(s)	328, 370, 546, 766, 871
BpiI	GAAGAC	1 cut(s)	718
Bpu10I	CCTNAGC	1 cut(s)	735
BpuMI	CCSGG	2 cut(s)	303, 304
BsaAI	YACGTR	1 cut(s)	743
BsaBI	GATNNNNATC	1 cut(s)	560
BsaJI	CCNNGG	5 cut(s)	302, 331, 914, 1034, 1068
Bsc4I	CCNNNNNNNGG	3 cut(s)	302, 786, 1074
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	2 cut(s)	522, 949
Bse21I	CCTNAGG	1 cut(s)	705
Bse3DI	GCAATG	1 cut(s)	492
Bse8I	GATNNNNATC	1 cut(s)	560
BseBI	CCWGG	4 cut(s)	798, 875, 915, 1035
BseDI	CCNNGG	5 cut(s)	302, 331, 914, 1034, 1068
BseJI	GATNNNNATC	1 cut(s)	560
BseLI	CCNNNNNNNGG	3 cut(s)	302, 786, 1074
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	4 cut(s)	378, 540, 696, 726
BseNI	ACTGG	2 cut(s)	522, 949
BseRI	GAGGAG	1 cut(s)	717
BseXI	GCAGC	6 cut(s)	65, 68, 184, 297, 410, 503
BsgI	GTGCAG	1 cut(s)	183
Bsh1285I	CGRYCG	1 cut(s)	1027
BshFI	GGCC	2 cut(s)	63, 1033
BshNI	GGYRCC	1 cut(s)	764
BsiEI	CGRYCG	1 cut(s)	1027
BsiHKCI	CYCGRG	4 cut(s)	252, 302, 428, 783
BsiSI	CCGG	3 cut(s)	39, 60, 303
BslFI	GGGAC	5 cut(s)	99, 569, 765, 866, 1052
BslI	CCNNNNNNNGG	3 cut(s)	302, 786, 1074
BsmFI	GGGAC	5 cut(s)	99, 569, 765, 866, 1052
BsmI	GAATGC	1 cut(s)	376
BsnI	GGCC	2 cut(s)	63, 1033
BsoBI	CYCGRG	4 cut(s)	252, 302, 428, 783
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp143I	GATC	8 cut(s)	147, 357, 513, 561, 669, 695, 927, 1060
BspACI	CCGC	1 cut(s)	780
BspANI	GGCC	2 cut(s)	63, 1033
BspCNI	CTCAG	4 cut(s)	377, 541, 697, 727
BspHI	TCATGA	2 cut(s)	136, 666
BspLI	GGNNCC	2 cut(s)	726, 766
BspMAI	CTGCAG	1 cut(s)	1125
BspPI	GGATC	4 cut(s)	155, 703, 935, 1055
BspT107I	GGYRCC	1 cut(s)	764
BsrBI	CCGCTC	1 cut(s)	782
BsrDI	GCAATG	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	522, 949
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	5 cut(s)	302, 331, 914, 1034, 1068
BssMI	GATC	8 cut(s)	147, 357, 513, 561, 669, 695, 927, 1060
BssT1I	CCWWGG	1 cut(s)	1068
Bst2UI	CCWGG	4 cut(s)	798, 875, 915, 1035
Bst4CI	ACNGT	2 cut(s)	227, 288
BstAPI	GCANNNNNTGC	2 cut(s)	380, 404
BstBAI	YACGTR	1 cut(s)	743
BstC8I	GCNNGC	3 cut(s)	61, 982, 1121
BstDEI	CTNAG	6 cut(s)	203, 364, 549, 705, 735, 1170
BstKTI	GATC	8 cut(s)	150, 360, 516, 564, 672, 698, 930, 1063
BstMBI	GATC	8 cut(s)	147, 357, 513, 561, 669, 695, 927, 1060
BstMCI	CGRYCG	1 cut(s)	1027
BstMWI	GCNNNNNNNGC	5 cut(s)	380, 404, 491, 745, 1147
BstNI	CCWGG	4 cut(s)	798, 875, 915, 1035
BstNSI	RCATGY	2 cut(s)	158, 984
BstSCI	CCNGG	6 cut(s)	301, 302, 796, 873, 913, 1033
BstSFI	CTRYAG	1 cut(s)	1121
BstV1I	GCAGC	6 cut(s)	65, 68, 184, 297, 410, 503
BstV2I	GAAGAC	1 cut(s)	718
BstX2I	RGATCY	2 cut(s)	357, 927
BstYI	RGATCY	2 cut(s)	357, 927
Bsu36I	CCTNAGG	1 cut(s)	705
BsuRI	GGCC	2 cut(s)	63, 1033
BtsIMutI	CAGTG	3 cut(s)	867, 942, 966
Cac8I	GCNNGC	3 cut(s)	61, 982, 1121
CaiI	CAGNNNCTG	2 cut(s)	704, 1084
CciI	TCATGA	2 cut(s)	136, 666
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	1166
Cfr9I	CCCGGG	1 cut(s)	302
CsiI	ACCWGGT	1 cut(s)	873
Csp6I	GTAC	2 cut(s)	423, 525
CviQI	GTAC	2 cut(s)	423, 525
DdeI	CTNAG	6 cut(s)	203, 364, 549, 705, 735, 1170
DpnI	GATC	8 cut(s)	149, 359, 515, 563, 671, 697, 929, 1062
DpnII	GATC	8 cut(s)	147, 357, 513, 561, 669, 695, 927, 1060
DriI	GACNNNNNGTC	1 cut(s)	806
Eam1105I	GACNNNNNGTC	1 cut(s)	806
Eco130I	CCWWGG	1 cut(s)	1068
Eco24I	GRGCYC	1 cut(s)	435
Eco32I	GATATC	1 cut(s)	628
Eco47I	GGWCC	1 cut(s)	1166
Eco57I	CTGAAG	1 cut(s)	824
Eco81I	CCTNAGG	1 cut(s)	705
Eco88I	CYCGRG	4 cut(s)	252, 302, 428, 783
EcoRII	CCWGG	4 cut(s)	796, 873, 913, 1033
EcoRV	GATATC	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	1068
EcoT22I	ATGCAT	2 cut(s)	376, 393
EcoT38I	GRGCYC	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	1068
FaqI	GGGAC	5 cut(s)	99, 569, 765, 866, 1052
FauNDI	CATATG	1 cut(s)	598
Fnu4HI	GCNGC	7 cut(s)	54, 57, 198, 311, 399, 492, 780
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	7 cut(s)	54, 57, 198, 311, 399, 492, 780
FspBI	CTAG	3 cut(s)	108, 635, 716
GluI	GCNGC	7 cut(s)	54, 57, 198, 311, 399, 492, 780
HaeIII	GGCC	2 cut(s)	63, 1033
HapII	CCGG	3 cut(s)	39, 60, 303
HinfI	GANTC	4 cut(s)	14, 104, 218, 756
HpaII	CCGG	3 cut(s)	39, 60, 303
HphI	GGTGA	4 cut(s)	61, 428, 554, 556
Hpy166II	GTNNAC	4 cut(s)	241, 425, 545, 1003
Hpy188I	TCNGA	4 cut(s)	335, 367, 700, 812
Hpy188III	TCNNGA	5 cut(s)	137, 252, 296, 667, 1112
Hpy8I	GTNNAC	4 cut(s)	241, 425, 545, 1003
HpyCH4III	ACNGT	2 cut(s)	227, 288
HpyCH4IV	ACGT	1 cut(s)	742
HpyF10VI	GCNNNNNNNGC	5 cut(s)	380, 404, 491, 745, 1147
HpyF3I	CTNAG	6 cut(s)	203, 364, 549, 705, 735, 1170
HpySE526I	ACGT	1 cut(s)	742
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
Kzo9I	GATC	8 cut(s)	147, 357, 513, 561, 669, 695, 927, 1060
LmnI	GCTCC	3 cut(s)	27, 730, 1081
Lsp1109I	GCAGC	6 cut(s)	65, 68, 184, 297, 410, 503
LweI	GCATC	5 cut(s)	328, 370, 546, 766, 871
MabI	ACCWGGT	1 cut(s)	873
MaeI	CTAG	3 cut(s)	108, 635, 716
MaeII	ACGT	1 cut(s)	742
MaeIII	GTNAC	5 cut(s)	96, 163, 179, 229, 865
MalI	GATC	8 cut(s)	149, 359, 515, 563, 671, 697, 929, 1062
MbiI	CCGCTC	1 cut(s)	782
MboI	GATC	8 cut(s)	147, 357, 513, 561, 669, 695, 927, 1060
MboII	GAAGA	7 cut(s)	272, 352, 565, 581, 625, 635, 723
MflI	RGATCY	2 cut(s)	357, 927
MhlI	GDGCHC	1 cut(s)	435
MluCI	AATT	4 cut(s)	32, 314, 968, 1087
MlyI	GAGTC	2 cut(s)	8, 212
Mph1103I	ATGCAT	2 cut(s)	376, 393
MroNI	GCCGGC	1 cut(s)	59
MseI	TTAA	1 cut(s)	684
MslI	CAYNNNNRTG	3 cut(s)	845, 1135, 1155
MspA1I	CMGCKG	2 cut(s)	401, 833
MspI	CCGG	3 cut(s)	39, 60, 303
MspR9I	CCNGG	6 cut(s)	303, 304, 798, 875, 915, 1035
Mva1269I	GAATGC	1 cut(s)	376
MvaI	CCWGG	4 cut(s)	798, 875, 915, 1035
MwoI	GCNNNNNNNGC	5 cut(s)	380, 404, 491, 745, 1147
NaeI	GCCGGC	1 cut(s)	61
NciI	CCSGG	2 cut(s)	303, 304
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	8 cut(s)	147, 357, 513, 561, 669, 695, 927, 1060
NgoMIV	GCCGGC	1 cut(s)	59
NlaIV	GGNNCC	2 cut(s)	726, 766
NmuCI	GTSAC	3 cut(s)	96, 163, 865
NsiI	ATGCAT	2 cut(s)	376, 393
NspI	RCATGY	2 cut(s)	158, 984
OliI	CACNNNNGTG	1 cut(s)	845
PaeI	GCATGC	1 cut(s)	984
PaeR7I	CTCGAG	3 cut(s)	252, 428, 783
PagI	TCATGA	2 cut(s)	136, 666
PctI	GAATGC	1 cut(s)	376
PdiI	GCCGGC	1 cut(s)	61
PfeI	GAWTC	2 cut(s)	104, 756
PfoI	TCCNGGA	1 cut(s)	796
PkrI	GCNGC	7 cut(s)	55, 58, 199, 312, 400, 493, 781
PleI	GAGTC	2 cut(s)	8, 212
PpsI	GAGTC	2 cut(s)	8, 212
Ppu21I	YACGTR	1 cut(s)	743
Psp6I	CCWGG	4 cut(s)	796, 873, 913, 1033
PspGI	CCWGG	4 cut(s)	796, 873, 913, 1033
PspN4I	GGNNCC	2 cut(s)	726, 766
PspPI	GGNCC	1 cut(s)	1166
PspXI	VCTCGAGB	2 cut(s)	428, 783
PstI	CTGCAG	1 cut(s)	1125
PstNI	CAGNNNCTG	2 cut(s)	704, 1084
PsuI	RGATCY	2 cut(s)	357, 927
PvuII	CAGCTG	2 cut(s)	401, 833
RsaI	GTAC	2 cut(s)	424, 526
RsaNI	GTAC	2 cut(s)	423, 525
RseI	CAYNNNNRTG	3 cut(s)	845, 1135, 1155
SaqAI	TTAA	1 cut(s)	684
SatI	GCNGC	7 cut(s)	54, 57, 198, 311, 399, 492, 780
Sau3AI	GATC	8 cut(s)	147, 357, 513, 561, 669, 695, 927, 1060
Sau96I	GGNCC	1 cut(s)	1166
ScaI	AGTACT	1 cut(s)	526
SchI	GAGTC	2 cut(s)	8, 212
ScrFI	CCNGG	6 cut(s)	303, 304, 798, 875, 915, 1035
SduI	GDGCHC	1 cut(s)	435
SexAI	ACCWGGT	1 cut(s)	873
SfaNI	GCATC	5 cut(s)	328, 370, 546, 766, 871
SfcI	CTRYAG	1 cut(s)	1121
Sfr274I	CTCGAG	3 cut(s)	252, 428, 783
SinI	GGWCC	1 cut(s)	1166
SlaI	CTCGAG	3 cut(s)	252, 428, 783
SmaI	CCCGGG	1 cut(s)	304
SmiMI	CAYNNNNRTG	3 cut(s)	845, 1135, 1155
SmlI	CTYRAG	3 cut(s)	252, 428, 783
SmoI	CTYRAG	3 cut(s)	252, 428, 783
SphI	GCATGC	1 cut(s)	984
Sse9I	AATT	4 cut(s)	32, 314, 968, 1087
SsiI	CCGC	1 cut(s)	780
SspMI	CTAG	3 cut(s)	108, 635, 716
StyD4I	CCNGG	6 cut(s)	301, 302, 796, 873, 913, 1033
StyI	CCWWGG	1 cut(s)	1068
TaaI	ACNGT	2 cut(s)	227, 288
TaiI	ACGT	1 cut(s)	745
TaqI	TCGA	7 cut(s)	17, 253, 429, 439, 730, 784, 1023
TaqII	GACCGA	1 cut(s)	1041
TasI	AATT	4 cut(s)	32, 314, 968, 1087
TatI	WGTACW	2 cut(s)	422, 524
TauI	GCSGC	1 cut(s)	782
TfiI	GAWTC	2 cut(s)	104, 756
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TscAI	CASTG	3 cut(s)	874, 949, 966
TseFI	GTSAC	3 cut(s)	96, 163, 865
TseI	GCWGC	6 cut(s)	53, 56, 197, 310, 398, 491
Tsp45I	GTSAC	3 cut(s)	96, 163, 865
TspDTI	ATGAA	3 cut(s)	153, 307, 840
TspMI	CCCGGG	1 cut(s)	302
TspRI	CASTG	3 cut(s)	874, 949, 966
VpaK11BI	GGWCC	1 cut(s)	1166
XapI	RAATTY	2 cut(s)	32, 968
XceI	RCATGY	2 cut(s)	158, 984
XhoI	CTCGAG	3 cut(s)	252, 428, 783
XmaI	CCCGGG	1 cut(s)	302
XspI	CTAG	3 cut(s)	108, 635, 716
ZrmI	AGTACT	1 cut(s)	526
Zsp2I	ATGCAT	2 cut(s)	376, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.