Prupe.3G187800_v2.0.a1

UDP-arabinose 4-epimerase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
20139673 .. 20141912
2240 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G187800.1

Sequence Viewer

Length: 1188 bp
ATGGATATTGCAGTTGCAAAACGAAGGAGCAGTTTTTCTGGCAAATTTTTTGCAGCTGCTGTCCTCATTACCCTCTGCTTTGTCATGTTCAAGCACTCGTCGCTTAATTCTAGCAGCCCCAACATGTTTTCTTACCGTGAAGTCGGCGTGACGCATGTCTTGGTTACAGGAGGTGCTGGCTACATAGGTTCTCATGCTGCACTTAGGCTTTTGAAGGATTCATATCGTGTAACCATTGTGGACAATCTCTCCCGAGGAAATATCGGCGCCGTTAGGGTTCTTCAGAAGTTATTTCCAGAACCCGGGAGACTTCAGTTTATTTACGCAGACCTGGGAGATGCCAAAGCTGTCAACAAAATCTTTTCAGAGAATGCATTTGATGCTGTCATGCATTTTGCAGCTGTTGCCTATGTTGGTGAAAGCACACTTGAGCCTCTTAGATATTATCACAACATCACATCAAACACCCTGTTGGTTTTGGAGGCAATGGCAGCACACAATGTGAAGACATTGATCTATTCTAGTACTTGTGCCACATATGGAGAACCTGAGAAGATGCCGATCACCGAAGAAACTACGCAGGTCCCAATCAATCCATATGGAAAAGCCAAGAAGATGGCAGAAGATATCATACTGGATTTCTCCAAAAACTCAGACATGGGGGTCATGATCTTACGATACTTTAATGTGATAGGATCAGACCCTGAGGGAAAACTAGGAGAGGCTCCTCGACCTGAGCTACGTGAGCAGGGCCGAATATCTGGTGCTTGTTTTGATGCAGCTCGAGGGATTATTCCTGGACTGAAGGTCAGAGGAGCAGACTATGAGACAGCTGATGGCACTTGTGTGAGGGACTACATTGATGTCACTGACCTGGTTGATGCTCATGTAAAAGCTCTTGCCCATGCACAGCCTGGAAAGGTTGGGATCTACAATGTTGGCACTGGAAAAGGTAGTTCAGTGAAGGAGTTTGTCGAGGCGTGTAAGAAGGCGACAGGGGTGGACATAAAGGTTGAATACCTCAGCCGAAGGCCAGGGGATTATGCTAAAGTTTATAGTGACCCTTCCAAGGTAAGGCAGGAGTTAAATTGGACAGCCCGCTATACACTTCAAGAGAGCTTACAGATTGCATGGAGATGGCAAAAATCCCATCTGAACGGCTATGGTCTTTCCAATGCTATGGGTTGA

Protein Analysis

396

Amino Acids

43.35

Weight (kDa)

8.73

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011714)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 662
Acc36I ACCTGC 1 cut(s) 571
AccB1I GGYRCC 1 cut(s) 266
AciI CCGC 1 cut(s) 1099
AclWI GGATC 2 cut(s) 703, 935
AcsI RAATTY 1 cut(s) 44
AcuI CTGAAG 3 cut(s) 266, 296, 824
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 502
AfaI GTAC 1 cut(s) 526
AfiI CCNNNNNNNGG 3 cut(s) 302, 1069, 1074
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 4 cut(s) 91, 214, 1016, 1112
AhdI GACNNNNNGTC 1 cut(s) 806
AjnI CCWGG 5 cut(s) 330, 796, 873, 913, 1033
AleI CACNNNNGTG 1 cut(s) 845
AluBI AGCT 8 cut(s) 56, 347, 401, 739, 782, 833, 896, 1119
AluI AGCT 8 cut(s) 56, 347, 401, 739, 782, 833, 896, 1119
Alw26I GTCTC 2 cut(s) 301, 821
AlwI GGATC 2 cut(s) 703, 935
AlwNI CAGNNNCTG 2 cut(s) 59, 704
Ama87I CYCGRG 3 cut(s) 252, 302, 783
AoxI GGCC 2 cut(s) 751, 1031
ApeKI GCWGC 7 cut(s) 53, 56, 114, 197, 398, 491, 779
ApoI RAATTY 1 cut(s) 44
AspLEI GCGC 1 cut(s) 269
AspS9I GGNCC 2 cut(s) 583, 751
AsuC2I CCSGG 2 cut(s) 303, 304
AsuHPI GGTGA 2 cut(s) 428, 556
AvaI CYCGRG 3 cut(s) 252, 302, 783
AvaII GGWCC 1 cut(s) 583
AxyI CCTNAGG 1 cut(s) 705
BanI GGYRCC 1 cut(s) 266
BarI GAAGNNNNNNTAC 2 cut(s) 615, 647
BbsI GAAGAC 1 cut(s) 512
BbvCI CCTCAGC 1 cut(s) 1022
BbvI GCAGC 7 cut(s) 43, 65, 126, 184, 410, 503, 791
BccI CCATC 4 cut(s) 610, 830, 1131, 1158
BceAI ACGGC 2 cut(s) 254, 1174
BciT130I CCWGG 5 cut(s) 332, 798, 875, 915, 1035
BcnI CCSGG 2 cut(s) 303, 304
BcoDI GTCTC 2 cut(s) 301, 821
BfaI CTAG 3 cut(s) 111, 522, 716
BfoI RGCGCY 1 cut(s) 270
BfuAI ACCTGC 1 cut(s) 571
BisI GCNGC 7 cut(s) 54, 57, 115, 198, 399, 492, 780
BlsI GCNGC 7 cut(s) 55, 58, 116, 199, 400, 493, 781
BmcAI AGTACT 1 cut(s) 526
Bme1390I CCNGG 7 cut(s) 303, 304, 332, 798, 875, 915, 1035
Bme18I GGWCC 1 cut(s) 583
BmeRI GACNNNNNGTC 1 cut(s) 806
BmeT110I CYCGRG 3 cut(s) 252, 302, 783
BmgT120I GGNCC 2 cut(s) 583, 751
BmiI GGNNCC 3 cut(s) 268, 585, 726
BmrFI CCNGG 7 cut(s) 303, 304, 332, 798, 875, 915, 1035
BmsI GCATC 5 cut(s) 328, 370, 546, 766, 871
BoxI GACNNNNGTC 1 cut(s) 155
BpiI GAAGAC 1 cut(s) 512
Bpu10I CCTNAGC 2 cut(s) 735, 1022
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 2 cut(s) 303, 304
BsaAI YACGTR 1 cut(s) 743
BsaBI GATNNNNATC 2 cut(s) 222, 560
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 5 cut(s) 253, 302, 331, 1034, 1068
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 1069, 1074
Bse1I ACTGG 2 cut(s) 639, 949
Bse21I CCTNAGG 1 cut(s) 705
Bse3DI GCAATG 1 cut(s) 492
Bse8I GATNNNNATC 2 cut(s) 222, 560
BseBI CCWGG 5 cut(s) 332, 798, 875, 915, 1035
BseDI CCNNGG 5 cut(s) 253, 302, 331, 1034, 1068
BseJI GATNNNNATC 2 cut(s) 222, 560
BseLI CCNNNNNNNGG 3 cut(s) 302, 1069, 1074
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 5 cut(s) 540, 666, 696, 726, 1036
BseNI ACTGG 2 cut(s) 639, 949
BseRI GAGGAG 2 cut(s) 717, 828
BseXI GCAGC 7 cut(s) 43, 65, 126, 184, 410, 503, 791
BsgI GTGCAG 1 cut(s) 183
BshFI GGCC 2 cut(s) 753, 1033
BshNI GGYRCC 1 cut(s) 266
BsiHKCI CYCGRG 3 cut(s) 252, 302, 783
BsiSI CCGG 1 cut(s) 303
BslFI GGGAC 2 cut(s) 569, 866
BslI CCNNNNNNNGG 3 cut(s) 302, 1069, 1074
BsmAI GTCTC 2 cut(s) 301, 821
BsmFI GGGAC 2 cut(s) 569, 866
BsmI GAATGC 1 cut(s) 376
BsnI GGCC 2 cut(s) 753, 1033
BsoBI CYCGRG 3 cut(s) 252, 302, 783
Bsp143I GATC 5 cut(s) 513, 561, 669, 695, 927
BspACI CCGC 1 cut(s) 1099
BspANI GGCC 2 cut(s) 753, 1033
BspCNI CTCAG 5 cut(s) 541, 665, 697, 727, 1035
BspHI TCATGA 1 cut(s) 666
BspLI GGNNCC 3 cut(s) 268, 585, 726
BspMI ACCTGC 1 cut(s) 571
BspPI GGATC 2 cut(s) 703, 935
BspT107I GGYRCC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 492
BsrI ACTGG 2 cut(s) 639, 949
BssECI CCNNGG 5 cut(s) 253, 302, 331, 1034, 1068
BssMI GATC 5 cut(s) 513, 561, 669, 695, 927
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 1068
Bst2UI CCWGG 5 cut(s) 332, 798, 875, 915, 1035
Bst4CI ACNGT 1 cut(s) 137
BstACI GRCGYC 1 cut(s) 267
BstAPI GCANNNNNTGC 2 cut(s) 380, 404
BstBAI YACGTR 1 cut(s) 743
BstC8I GCNNGC 2 cut(s) 178, 1099
BstDEI CTNAG 7 cut(s) 203, 437, 549, 652, 705, 735, 1022
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 5 cut(s) 516, 564, 672, 698, 930
BstMAI GTCTC 2 cut(s) 301, 821
BstMBI GATC 5 cut(s) 513, 561, 669, 695, 927
BstMWI GCNNNNNNNGC 5 cut(s) 100, 380, 404, 491, 745
BstNI CCWGG 5 cut(s) 332, 798, 875, 915, 1035
BstNSI RCATGY 2 cut(s) 127, 158
BstPAI GACNNNNGTC 1 cut(s) 155
BstSCI CCNGG 7 cut(s) 301, 302, 330, 796, 873, 913, 1033
BstV1I GCAGC 7 cut(s) 43, 65, 126, 184, 410, 503, 791
BstV2I GAAGAC 1 cut(s) 512
BstX2I RGATCY 1 cut(s) 927
BstXI CCANNNNNNTGG 2 cut(s) 616, 1180
BstYI RGATCY 1 cut(s) 927
Bsu36I CCTNAGG 1 cut(s) 705
BsuRI GGCC 2 cut(s) 753, 1033
BtsIMutI CAGTG 3 cut(s) 867, 942, 966
BveI ACCTGC 1 cut(s) 571
Cac8I GCNNGC 2 cut(s) 178, 1099
CaiI CAGNNNCTG 2 cut(s) 59, 704
CciI TCATGA 1 cut(s) 666
CfoI GCGC 1 cut(s) 269
Cfr13I GGNCC 2 cut(s) 583, 751
Cfr9I CCCGGG 1 cut(s) 302
CseI GACGC 1 cut(s) 160
CsiI ACCWGGT 1 cut(s) 873
Csp6I GTAC 1 cut(s) 525
CviQI GTAC 1 cut(s) 525
DdeI CTNAG 7 cut(s) 203, 437, 549, 652, 705, 735, 1022
DinI GGCGCC 1 cut(s) 268
DpnI GATC 5 cut(s) 515, 563, 671, 697, 929
DpnII GATC 5 cut(s) 513, 561, 669, 695, 927
DraIII CACNNNGTG 1 cut(s) 502
DrdI GACNNNNNNGTC 1 cut(s) 662
DriI GACNNNNNGTC 1 cut(s) 806
DseDI GACNNNNNNGTC 1 cut(s) 662
Eam1105I GACNNNNNGTC 1 cut(s) 806
Eco130I CCWWGG 1 cut(s) 1068
Eco32I GATATC 1 cut(s) 628
Eco47I GGWCC 1 cut(s) 583
Eco57I CTGAAG 3 cut(s) 266, 296, 824
Eco81I CCTNAGG 1 cut(s) 705
Eco88I CYCGRG 3 cut(s) 252, 302, 783
EcoO109I RGGNCCY 1 cut(s) 583
EcoRII CCWGG 5 cut(s) 330, 796, 873, 913, 1033
EcoRV GATATC 1 cut(s) 628
EcoT14I CCWWGG 1 cut(s) 1068
EcoT22I ATGCAT 2 cut(s) 376, 393
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 1068
FaqI GGGAC 2 cut(s) 569, 866
FauI CCCGC 1 cut(s) 1106
FauNDI CATATG 2 cut(s) 538, 598
Fnu4HI GCNGC 7 cut(s) 54, 57, 115, 198, 399, 492, 780
Fsp4HI GCNGC 7 cut(s) 54, 57, 115, 198, 399, 492, 780
FspBI CTAG 3 cut(s) 111, 522, 716
GlaI GCGC 1 cut(s) 268
GluI GCNGC 7 cut(s) 54, 57, 115, 198, 399, 492, 780
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 2 cut(s) 753, 1033
HapII CCGG 1 cut(s) 303
HgaI GACGC 1 cut(s) 160
HhaI GCGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 267
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 1 cut(s) 218
HpaII CCGG 1 cut(s) 303
HphI GGTGA 2 cut(s) 428, 556
Hpy166II GTNNAC 3 cut(s) 241, 352, 1003
Hpy188I TCNGA 6 cut(s) 285, 367, 655, 700, 812, 1155
Hpy188III TCNNGA 4 cut(s) 252, 296, 667, 1112
Hpy8I GTNNAC 3 cut(s) 241, 352, 1003
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 7 cut(s) 18, 208, 799, 958, 982, 1023, 1074
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 742
HpyF10VI GCNNNNNNNGC 5 cut(s) 100, 380, 404, 491, 745
HpyF3I CTNAG 7 cut(s) 203, 437, 549, 652, 705, 735, 1022
HpySE526I ACGT 1 cut(s) 742
Hsp92I GRCGYC 1 cut(s) 267
HspAI GCGC 1 cut(s) 267
KasI GGCGCC 1 cut(s) 266
Kzo9I GATC 5 cut(s) 513, 561, 669, 695, 927
LmnI GCTCC 3 cut(s) 27, 730, 815
Lsp1109I GCAGC 7 cut(s) 43, 65, 126, 184, 410, 503, 791
LweI GCATC 5 cut(s) 328, 370, 546, 766, 871
MabI ACCWGGT 1 cut(s) 873
MaeI CTAG 3 cut(s) 111, 522, 716
MaeII ACGT 1 cut(s) 742
MaeIII GTNAC 5 cut(s) 148, 163, 229, 865, 1058
MalI GATC 5 cut(s) 515, 563, 671, 697, 929
MboI GATC 5 cut(s) 513, 561, 669, 695, 927
MboII GAAGA 6 cut(s) 272, 517, 565, 581, 625, 635
MflI RGATCY 1 cut(s) 927
MluCI AATT 3 cut(s) 44, 106, 1087
Mly113I GGCGCC 1 cut(s) 267
Mph1103I ATGCAT 2 cut(s) 376, 393
MseI TTAA 3 cut(s) 105, 684, 1085
MslI CAYNNNNRTG 2 cut(s) 845, 1135
MspA1I CMGCKG 3 cut(s) 56, 401, 833
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 7 cut(s) 303, 304, 332, 798, 875, 915, 1035
Mva1269I GAATGC 1 cut(s) 376
MvaI CCWGG 5 cut(s) 332, 798, 875, 915, 1035
MwoI GCNNNNNNNGC 5 cut(s) 100, 380, 404, 491, 745
NarI GGCGCC 1 cut(s) 267
NciI CCSGG 2 cut(s) 303, 304
NdeI CATATG 2 cut(s) 538, 598
NdeII GATC 5 cut(s) 513, 561, 669, 695, 927
NlaIV GGNNCC 3 cut(s) 268, 585, 726
NmuCI GTSAC 3 cut(s) 148, 865, 1058
NsiI ATGCAT 2 cut(s) 376, 393
NspI RCATGY 2 cut(s) 127, 158
OliI CACNNNNGTG 1 cut(s) 845
PaeR7I CTCGAG 1 cut(s) 783
PagI TCATGA 1 cut(s) 666
PciI ACATGT 1 cut(s) 123
PctI GAATGC 1 cut(s) 376
PfeI GAWTC 1 cut(s) 218
PfoI TCCNGGA 1 cut(s) 796
PkrI GCNGC 7 cut(s) 55, 58, 116, 199, 400, 493, 781
PluTI GGCGCC 1 cut(s) 270
Ppu21I YACGTR 1 cut(s) 743
PpuMI RGGWCCY 1 cut(s) 583
PscI ACATGT 1 cut(s) 123
PshAI GACNNNNGTC 1 cut(s) 155
Psp5II RGGWCCY 1 cut(s) 583
Psp6I CCWGG 5 cut(s) 330, 796, 873, 913, 1033
PspGI CCWGG 5 cut(s) 330, 796, 873, 913, 1033
PspN4I GGNNCC 3 cut(s) 268, 585, 726
PspPI GGNCC 2 cut(s) 583, 751
PspPPI RGGWCCY 1 cut(s) 583
PspXI VCTCGAGB 1 cut(s) 783
PstNI CAGNNNCTG 2 cut(s) 59, 704
PsuI RGATCY 1 cut(s) 927
PvuII CAGCTG 3 cut(s) 56, 401, 833
RsaI GTAC 1 cut(s) 526
RsaNI GTAC 1 cut(s) 525
RseI CAYNNNNRTG 2 cut(s) 845, 1135
SaqAI TTAA 3 cut(s) 105, 684, 1085
SatI GCNGC 7 cut(s) 54, 57, 115, 198, 399, 492, 780
Sau3AI GATC 5 cut(s) 513, 561, 669, 695, 927
Sau96I GGNCC 2 cut(s) 583, 751
ScaI AGTACT 1 cut(s) 526
ScrFI CCNGG 7 cut(s) 303, 304, 332, 798, 875, 915, 1035
SexAI ACCWGGT 1 cut(s) 873
SfaNI GCATC 5 cut(s) 328, 370, 546, 766, 871
SfoI GGCGCC 1 cut(s) 268
Sfr274I CTCGAG 1 cut(s) 783
SinI GGWCC 1 cut(s) 583
SlaI CTCGAG 1 cut(s) 783
SmaI CCCGGG 1 cut(s) 304
SmiMI CAYNNNNRTG 2 cut(s) 845, 1135
SmlI CTYRAG 2 cut(s) 428, 783
SmoI CTYRAG 2 cut(s) 428, 783
Sse9I AATT 3 cut(s) 44, 106, 1087
SsiI CCGC 1 cut(s) 1099
SspDI GGCGCC 1 cut(s) 266
SspMI CTAG 3 cut(s) 111, 522, 716
StyD4I CCNGG 7 cut(s) 301, 302, 330, 796, 873, 913, 1033
StyI CCWWGG 1 cut(s) 1068
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 1 cut(s) 745
TaqI TCGA 3 cut(s) 730, 784, 975
TasI AATT 3 cut(s) 44, 106, 1087
TatI WGTACW 1 cut(s) 524
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 3 cut(s) 105, 684, 1085
Tru9I TTAA 3 cut(s) 105, 684, 1085
TscAI CASTG 3 cut(s) 874, 949, 966
TseFI GTSAC 3 cut(s) 148, 865, 1058
TseI GCWGC 7 cut(s) 53, 56, 114, 197, 398, 491, 779
Tsp45I GTSAC 3 cut(s) 148, 865, 1058
TspDTI ATGAA 1 cut(s) 210
TspMI CCCGGG 1 cut(s) 302
TspRI CASTG 3 cut(s) 874, 949, 966
VpaK11BI GGWCC 1 cut(s) 583
XapI RAATTY 1 cut(s) 44
XceI RCATGY 2 cut(s) 127, 158
XcmI CCANNNNNNNNNTGG 1 cut(s) 911
XhoI CTCGAG 1 cut(s) 783
XmaI CCCGGG 1 cut(s) 302
XspI CTAG 3 cut(s) 111, 522, 716
ZrmI AGTACT 1 cut(s) 526
Zsp2I ATGCAT 2 cut(s) 376, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.