Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0013129

Physical Location & Seq

Genomic Coordinates Forward (+)

10406323 .. 10407525

Gene Structure 1203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCCTCCACTGCATGCTTTTTGCACCACCATGCACTCACTACCGCCGCTTCTGCCCGGCCCTCATCGTCTTCGCAGCGCCAAGTGGTGAACATCAACAAGCACAACCAGGTTGTGATCTGCCGGGCCCAGAAGCAGGCCGCCGGCCAGGAAGAAGAGAGCGGTGCTATCGTCTCGCGGCGGTTGGCTCTCACAGTCCTCATCGGTGCTGCAGCCCTTGGCTCCAAGGTCTCCCCAGCTGATGCAGCTTATGGCGAATCAGCCAATGTCTTTGGAAAGCCCAAGTCGAACACAGACTTCTTGCCATACTTTGGAAAGGGATTCAAGCTATCCATTCCTTCAAAATGGAACCCTAGCAAAGAGGTTGAGTACCCCGGTCAAGTTCTTAGGTACGAGGATAACTTCGACACCACGACCAACGTGGCCGTCACAATCACCCCAACCGAGAAGAAGTCCGTCGGCGACTATGGCCCCCCTGAGGAATTCCTCAATCAGGTGGACTATTTGCTAGGCAAACAAGCTTACTTTGGCAAGACTGAGTCCGAGGGTGGTTTCGACTCGGGCGCAGTGGCCACAGCCAACATATTGGACAGTTCTAGCCAGGTGGTTGACGGAAAGCAGTACTACTATATATCTGTGTTGACAAGGACAGCAGACGGAGATGAAGGAGGCAAGCATCAGCTTATCACAGCCACCGTGAAAGACGGCAACCTCTACATTCTAAAGGCTCAAGCTGGAGACAAGAGGTGGTTCAAGGGAGCAAGGAAGTTTGTGGAGAGCACTGCATCTTCTTTCAGTGTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0019684 GO:0019898 GO:0019904 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbP

Protein Analysis

269

Amino Acids

28.8

Weight (kDa)

8.36

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	99 - 267	1.6e-37	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06680 AT1G06680
fragaria_vesca	FvH4_6g38900
malus_domestica	MD09G1146300.v1.1 MD17G1132900.v1.1
prunus_persica	Prupe.3G179400_v2.0.a1
pyrus_communis	pycom09g06660 pycom17g12650
rosa_chinensis	RchiOBHm_Chr2g0152481
rosa_laevigata	RLG00000020637
rosa_multiflora	Rmu_co8478837.1_g000001 Rmu_sc0005366.1_g000010
rosa_roxburghii	Rroxscaffold_2G00095680
rosa_rugosa	Rorug02G0433100
rosa_samantha	Rh2AG494900 Rh2BG507100 Rh2DG518300
rosa_wichuraiana	Rw2G040730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	311
AccBSI	CCGCTC	1 cut(s)	162
AccII	CGCG	1 cut(s)	178
AciI	CCGC	6 cut(s)	45, 48, 141, 162, 178, 181
AcoI	YGGCCR	3 cut(s)	145, 423, 570
AcsI	RAATTY	1 cut(s)	482
AfaI	GTAC	3 cut(s)	371, 392, 623
AfiI	CCNNNNNNNGG	4 cut(s)	136, 311, 478, 493
AgsI	TTSAA	3 cut(s)	325, 342, 754
AjnI	CCWGG	3 cut(s)	108, 147, 600
AluBI	AGCT	6 cut(s)	239, 248, 328, 521, 682, 734
AluI	AGCT	6 cut(s)	239, 248, 328, 521, 682, 734
Alw21I	GWGCWC	1 cut(s)	782
Alw26I	GTCTC	3 cut(s)	178, 235, 732
Ama87I	CYCGRG	1 cut(s)	559
AoxI	GGCC	8 cut(s)	3, 59, 126, 138, 145, 423, 469, 570
ApaI	GGGCCC	1 cut(s)	130
ApeKI	GCWGC	4 cut(s)	76, 209, 212, 245
ApoI	RAATTY	1 cut(s)	482
AspLEI	GCGC	2 cut(s)	81, 566
AspS9I	GGNCC	4 cut(s)	60, 126, 127, 470
AsuC2I	CCSGG	3 cut(s)	58, 125, 375
AsuHPI	GGTGA	2 cut(s)	100, 427
AvaI	CYCGRG	1 cut(s)	559
AxyI	CCTNAGG	1 cut(s)	477
BaeGI	GKGCMC	1 cut(s)	130
BalI	TGGCCA	1 cut(s)	572
BanII	GRGCYC	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	782
BbvI	GCAGC	4 cut(s)	88, 196, 224, 257
BceAI	ACGGC	2 cut(s)	410, 721
BciT130I	CCWGG	3 cut(s)	110, 149, 602
BcnI	CCSGG	3 cut(s)	58, 125, 375
BcoDI	GTCTC	3 cut(s)	178, 235, 732
BfaI	CTAG	3 cut(s)	354, 509, 597
BfmI	CTRYAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	82
BisI	GCNGC	7 cut(s)	48, 77, 141, 179, 210, 213, 246
BlsI	GCNGC	7 cut(s)	49, 78, 142, 180, 211, 214, 247
BmcAI	AGTACT	1 cut(s)	623
Bme1390I	CCNGG	6 cut(s)	58, 110, 125, 149, 375, 602
BmeT110I	CYCGRG	1 cut(s)	559
BmgT120I	GGNCC	4 cut(s)	60, 126, 127, 470
BmiI	GGNNCC	4 cut(s)	128, 223, 350, 472
BmrFI	CCNGG	6 cut(s)	58, 110, 125, 149, 375, 602
BmsI	GCATC	3 cut(s)	232, 685, 794
BpiI	GAAGAC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	756
BpuEI	CTTGAG	1 cut(s)	714
BpuMI	CCSGG	3 cut(s)	58, 125, 375
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	4 cut(s)	217, 225, 373, 543
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 311, 478, 493
Bse118I	RCCGGY	1 cut(s)	143
Bse21I	CCTNAGG	1 cut(s)	477
BseBI	CCWGG	3 cut(s)	110, 149, 602
BseDI	CCNNGG	4 cut(s)	217, 225, 373, 543
BseLI	CCNNNNNNNGG	4 cut(s)	136, 311, 478, 493
BseMII	CTCAG	2 cut(s)	468, 528
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	4 cut(s)	88, 196, 224, 257
BseYI	CCCAGC	1 cut(s)	235
Bsh1236I	CGCG	1 cut(s)	178
BshFI	GGCC	8 cut(s)	5, 61, 128, 140, 147, 425, 471, 572
BsiHKAI	GWGCWC	1 cut(s)	782
BsiHKCI	CYCGRG	1 cut(s)	559
BsiSI	CCGG	4 cut(s)	58, 124, 144, 375
BslI	CCNNNNNNNGG	4 cut(s)	136, 311, 478, 493
BsmAI	GTCTC	3 cut(s)	178, 235, 732
BsmBI	CGTCTC	1 cut(s)	178
BsnI	GGCC	8 cut(s)	5, 61, 128, 140, 147, 425, 471, 572
Bso31I	GGTCTC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	559
Bsp120I	GGGCCC	1 cut(s)	126
Bsp1286I	GDGCHC	2 cut(s)	130, 782
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	6 cut(s)	45, 48, 141, 162, 178, 181
BspANI	GGCC	8 cut(s)	5, 61, 128, 140, 147, 425, 471, 572
BspCNI	CTCAG	2 cut(s)	469, 529
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	4 cut(s)	128, 223, 350, 472
BspMAI	CTGCAG	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	235
BsrBI	CCGCTC	1 cut(s)	162
BsrFI	RCCGGY	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	4 cut(s)	217, 225, 373, 543
BssMI	GATC	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	217, 225
Bst2UI	CCWGG	3 cut(s)	110, 149, 602
Bst4CI	ACNGT	3 cut(s)	196, 593, 697
Bst6I	CTCTTC	1 cut(s)	150
BstC8I	GCNNGC	4 cut(s)	16, 138, 145, 674
BstDEI	CTNAG	3 cut(s)	386, 477, 537
BstENI	CCTNNNNNAGG	1 cut(s)	491
BstFNI	CGCG	1 cut(s)	178
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	2 cut(s)	81, 566
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	3 cut(s)	178, 235, 732
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 53, 245, 468
BstNI	CCWGG	3 cut(s)	110, 149, 602
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	6 cut(s)	56, 108, 123, 147, 373, 600
BstSFI	CTRYAG	1 cut(s)	210
BstSLI	GKGCMC	1 cut(s)	130
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	4 cut(s)	88, 196, 224, 257
BstV2I	GAAGAC	1 cut(s)	63
BstXI	CCANNNNNNTGG	1 cut(s)	586
Bsu36I	CCTNAGG	1 cut(s)	477
BsuRI	GGCC	8 cut(s)	5, 61, 128, 140, 147, 425, 471, 572
BtsI	GCAGTG	3 cut(s)	9, 573, 780
BtsIMutI	CAGTG	4 cut(s)	9, 573, 780, 802
Cac8I	GCNNGC	4 cut(s)	16, 138, 145, 674
CfoI	GCGC	2 cut(s)	81, 566
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	4 cut(s)	60, 126, 127, 470
CsiI	ACCWGGT	1 cut(s)	108
Csp6I	GTAC	3 cut(s)	370, 391, 622
CviAII	CATG	2 cut(s)	15, 32
CviQI	GTAC	3 cut(s)	370, 391, 622
DdeI	CTNAG	3 cut(s)	386, 477, 537
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
EaeI	YGGCCR	3 cut(s)	145, 423, 570
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco130I	CCWWGG	2 cut(s)	217, 225
Eco24I	GRGCYC	1 cut(s)	130
Eco31I	GGTCTC	1 cut(s)	235
Eco81I	CCTNAGG	1 cut(s)	477
Eco88I	CYCGRG	1 cut(s)	559
EcoNI	CCTNNNNNAGG	1 cut(s)	491
EcoRI	GAATTC	1 cut(s)	482
EcoRII	CCWGG	3 cut(s)	108, 147, 600
EcoT14I	CCWWGG	2 cut(s)	217, 225
EcoT38I	GRGCYC	1 cut(s)	130
ErhI	CCWWGG	2 cut(s)	217, 225
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	2 cut(s)	18, 35
FaiI	YATR	9 cut(s)	16, 33, 252, 307, 468, 584, 630, 632, 805
FatI	CATG	2 cut(s)	14, 31
Fnu4HI	GCNGC	7 cut(s)	48, 77, 141, 179, 210, 213, 246
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	7 cut(s)	48, 77, 141, 179, 210, 213, 246
FspBI	CTAG	3 cut(s)	354, 509, 597
GlaI	GCGC	2 cut(s)	80, 565
GluI	GCNGC	7 cut(s)	48, 77, 141, 179, 210, 213, 246
GsaI	CCCAGC	1 cut(s)	239
GsuI	CTGGAG	1 cut(s)	756
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	8 cut(s)	5, 61, 128, 140, 147, 425, 471, 572
HapII	CCGG	4 cut(s)	58, 124, 144, 375
HhaI	GCGC	2 cut(s)	81, 566
Hin1II	CATG	2 cut(s)	18, 35
Hin6I	GCGC	2 cut(s)	79, 564
HinP1I	GCGC	2 cut(s)	79, 564
HincII	GTYRAC	2 cut(s)	610, 642
HindII	GTYRAC	2 cut(s)	610, 642
HindIII	AAGCTT	1 cut(s)	519
HinfI	GANTC	4 cut(s)	257, 321, 539, 557
HpaII	CCGG	4 cut(s)	58, 124, 144, 375
HphI	GGTGA	2 cut(s)	100, 427
Hpy166II	GTNNAC	4 cut(s)	91, 499, 610, 642
Hpy188I	TCNGA	1 cut(s)	544
Hpy8I	GTNNAC	4 cut(s)	91, 499, 610, 642
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	2 cut(s)	348, 659
HpyCH4III	ACNGT	3 cut(s)	196, 593, 697
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	7 cut(s)	14, 25, 35, 212, 245, 785, 803
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 53, 245, 468
HpyF3I	CTNAG	3 cut(s)	386, 477, 537
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	2 cut(s)	18, 35
HspAI	GCGC	2 cut(s)	79, 564
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	227, 758
Lsp1109I	GCAGC	4 cut(s)	88, 196, 224, 257
LweI	GCATC	3 cut(s)	232, 685, 794
MabI	ACCWGGT	1 cut(s)	108
MaeI	CTAG	3 cut(s)	354, 509, 597
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	1 cut(s)	119
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	1 cut(s)	117
MboII	GAAGA	5 cut(s)	63, 164, 167, 460, 780
MhlI	GDGCHC	2 cut(s)	130, 782
MlsI	TGGCCA	1 cut(s)	572
MluCI	AATT	1 cut(s)	482
MluNI	TGGCCA	1 cut(s)	572
MlyI	GAGTC	2 cut(s)	548, 551
Mox20I	TGGCCA	1 cut(s)	572
MroNI	GCCGGC	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	572
MslI	CAYNNNNRTG	1 cut(s)	30
Msp20I	TGGCCA	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	4 cut(s)	58, 124, 144, 375
MspR9I	CCNGG	6 cut(s)	58, 110, 125, 149, 375, 602
MvaI	CCWGG	3 cut(s)	110, 149, 602
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	4 cut(s)	11, 53, 245, 468
NaeI	GCCGGC	1 cut(s)	145
NciI	CCSGG	3 cut(s)	58, 125, 375
NdeII	GATC	1 cut(s)	117
NgoMIV	GCCGGC	1 cut(s)	143
NlaIII	CATG	2 cut(s)	18, 35
NlaIV	GGNNCC	4 cut(s)	128, 223, 350, 472
NmuCI	GTSAC	1 cut(s)	427
NspI	RCATGY	1 cut(s)	18
PaeI	GCATGC	1 cut(s)	18
PdiI	GCCGGC	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	257, 321
PflFI	GACNNNGTC	1 cut(s)	538
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	7 cut(s)	49, 78, 142, 180, 211, 214, 247
PleI	GAGTC	2 cut(s)	547, 551
PpsI	GAGTC	2 cut(s)	547, 551
Psp6I	CCWGG	3 cut(s)	108, 147, 600
PspFI	CCCAGC	1 cut(s)	235
PspGI	CCWGG	3 cut(s)	108, 147, 600
PspN4I	GGNNCC	4 cut(s)	128, 223, 350, 472
PspOMI	GGGCCC	1 cut(s)	126
PspPI	GGNCC	4 cut(s)	60, 126, 127, 470
PstI	CTGCAG	1 cut(s)	214
PsyI	GACNNNGTC	1 cut(s)	538
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	3 cut(s)	371, 392, 623
RsaNI	GTAC	3 cut(s)	370, 391, 622
RseI	CAYNNNNRTG	1 cut(s)	30
SatI	GCNGC	7 cut(s)	48, 77, 141, 179, 210, 213, 246
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	4 cut(s)	60, 126, 127, 470
ScaI	AGTACT	1 cut(s)	623
SchI	GAGTC	2 cut(s)	548, 551
ScrFI	CCNGG	6 cut(s)	58, 110, 125, 149, 375, 602
SduI	GDGCHC	2 cut(s)	130, 782
SexAI	ACCWGGT	1 cut(s)	108
SfaNI	GCATC	3 cut(s)	232, 685, 794
SfcI	CTRYAG	1 cut(s)	210
SmiMI	CAYNNNNRTG	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	729
SmoI	CTYRAG	1 cut(s)	729
SphI	GCATGC	1 cut(s)	18
Sse9I	AATT	1 cut(s)	482
SsiI	CCGC	6 cut(s)	45, 48, 141, 162, 178, 181
SspMI	CTAG	3 cut(s)	354, 509, 597
StyD4I	CCNGG	6 cut(s)	56, 108, 123, 147, 373, 600
StyI	CCWWGG	2 cut(s)	217, 225
TaaI	ACNGT	3 cut(s)	196, 593, 697
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	3 cut(s)	287, 405, 555
TasI	AATT	1 cut(s)	482
TatI	WGTACW	1 cut(s)	621
TauI	GCSGC	3 cut(s)	50, 143, 181
TfiI	GAWTC	2 cut(s)	257, 321
TscAI	CASTG	4 cut(s)	16, 573, 787, 802
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	4 cut(s)	76, 209, 212, 245
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	1 cut(s)	678
TspGWI	ACGGA	3 cut(s)	445, 627, 672
TspRI	CASTG	4 cut(s)	16, 573, 787, 802
Tth111I	GACNNNGTC	1 cut(s)	538
Van91I	CCANNNNNTGG	1 cut(s)	311
XagI	CCTNNNNNAGG	1 cut(s)	491
XapI	RAATTY	1 cut(s)	482
XceI	RCATGY	1 cut(s)	18
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XspI	CTAG	3 cut(s)	354, 509, 597
ZrmI	AGTACT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.