pycom17g13150

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0016898
Physical Location & Seq
Reverse (-)
10833294 .. 10834726
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1194 bp
ATGGACGAACCTTTTATTTCCAGGACCGAGACAGCACTTGGTGTCGGAGGTGACGACCAACAAGTAGAGTCTTCGAGCACTTCAACGGCCCGATCACCACGAAGAAGAAGCCACCCCTCAGGTTACCTTGACGTAGTCAGCTCTGATGTTATCCTCCCCATCATTGCAACACCAAACTCTACCTCCTACGCCAATCTCATCGCGAACCTGAACAAGAACAAGCGAAGGAAGCTCAAGCGCCGCTCCCACTCAGCTCCCTTGGTGTTCACTGGCACCAAGGAGCTCATTCAAGACTCCCTGGATGATCCAAGACCTGCCCATAAATCAACACCCTTCATTGTTCGCCAGGCCTTCATCGGCGTCATTGTCTATGTCATTATCGGCATTGTCATAATCTTGACAGCCGGGGGTTTCAAGGGGAAAGCCACTTACAAGCCGGTTGATGCCTTGTACTTCATTGTGGTCACGCTCTGTACGATTGGATATGGTGACATTGTTCCTGACACGACGGCTACCAAGCTCTTCACCTGTTTCTTCATCTTGGTTGGTTTTGGATTCATCGACATTCTGCTGAACGGGTTGGTGGTGTACATCTGCGACAGGCAAGAATTGGTGTTGCTGAGCACTATCGATGAGACAAAGTTCAACCACATGATTCAGACGTACATGATCGATAAAGAGAAAGGAAGAATGAGAATAAGGATCAAGGTCGGGTTGGCATTGGGAGTGGTTATTGGTTGTATAGCTATAGGGACAATTGCAGTACATTTTCTGGAGCAGATGAGCTGGGTTGATAGTTTTTACCTCTCTGTTACTTCTGTGACAACGGTAGGTTACGGCGATTTCGCTTTCCAGACAGTTGGGGGTAGGTGTTTTGCAATAATCTGGTTACTGGTTAGCACATTAGCTGTTGCTAGGGCTTTTCTGTACTTGACTGAGCTTAGAATCGACAAGCGGAATCGCCGAATCGCGAAATGGGTTCTTCAGAAGGAGATCACCCTCAGGGACCTATTGGCAGCAGACCTAGATAATGATGGATGCATCAGCAAATCAGAGTTCGTCATATACAAGCTGAAGGAGATGGGGAGAGTAGCAGAGAGTGACATCCTGCAGATATCCAAGCAATTTGATTCTTTGGAACACAACAACAGTGGCAAAATTACTCTTGTTGATCTAATGGGAAGCAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

398

Amino Acids

44.1

Weight (kDa)

8.88

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 121 - 195 1.9e-13 Ion channel
Ion_trans_2 PF07885 244 - 312 2.6e-14 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016898)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g38350
malus_domestica MD09G1150900.v1.1
prunus_persica Prupe.3G174100_v2.0.a1
pyrus_communis pycom09g07070 pycom17g13150
rosa_chinensis RchiOBHm_Chr2g0151661
rosa_multiflora Rmu_sc0005294.1_g000051
rosa_roxburghii Rroxscaffold_2G00096280
rosa_rugosa Rorug02G0427600
rosa_samantha Rh2AG488500 Rh2BG501200 Rh2CG475000 Rh2DG512300
rosa_wichuraiana Rw2G040060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 322
AccB1I GGYRCC 1 cut(s) 272
AccBSI CCGCTC 1 cut(s) 243
AccII CGCG 2 cut(s) 203, 971
AciI CCGC 2 cut(s) 241, 955
AclWI GGATC 2 cut(s) 299, 710
AcuI CTGAAG 2 cut(s) 968, 1094
AcyI GRCGYC 1 cut(s) 360
AdeI CACNNNGTG 1 cut(s) 41
AfaI GTAC 6 cut(s) 452, 475, 590, 665, 765, 929
AflIII ACRYGT 1 cut(s) 1188
AgsI TTSAA 4 cut(s) 84, 290, 415, 646
AjnI CCWGG 3 cut(s) 20, 297, 345
Alw21I GWGCWC 3 cut(s) 80, 285, 626
Alw26I GTCTC 2 cut(s) 23, 629
AlwI GGATC 2 cut(s) 299, 710
AoxI GGCC 2 cut(s) 87, 348
ApeKI GCWGC 1 cut(s) 1016
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 3 cut(s) 24, 88, 1006
AsuC2I CCSGG 1 cut(s) 406
AsuHPI GGTGA 5 cut(s) 62, 87, 500, 517, 988
AvaII GGWCC 2 cut(s) 24, 1006
AxyI CCTNAGG 2 cut(s) 118, 1001
BanI GGYRCC 1 cut(s) 272
BanII GRGCYC 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 3 cut(s) 80, 285, 626
BbvI GCAGC 1 cut(s) 1028
BccI CCATC 3 cut(s) 167, 1028, 1075
BceAI ACGGC 3 cut(s) 102, 525, 853
BciT130I CCWGG 3 cut(s) 22, 299, 347
BcnI CCSGG 1 cut(s) 406
BcoDI GTCTC 2 cut(s) 23, 629
BfaI CTAG 2 cut(s) 915, 1025
BfmI CTRYAG 2 cut(s) 747, 1109
BfoI RGCGCY 1 cut(s) 241
BfuAI ACCTGC 1 cut(s) 322
BisI GCNGC 2 cut(s) 241, 1017
BlpI GCTNAGC 1 cut(s) 620
BlsI GCNGC 2 cut(s) 242, 1018
Bme1390I CCNGG 4 cut(s) 22, 299, 347, 406
Bme18I GGWCC 2 cut(s) 24, 1006
BmgT120I GGNCC 3 cut(s) 24, 88, 1006
BmiI GGNNCC 2 cut(s) 274, 1007
BmrFI CCNGG 4 cut(s) 22, 299, 347, 406
BmsI GCATC 3 cut(s) 433, 1028, 1050
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 794
Bpu1102I GCTNAGC 1 cut(s) 620
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 406
Bsa29I ATCGAT 2 cut(s) 630, 672
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 4 cut(s) 258, 276, 297, 405
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bse118I RCCGGY 1 cut(s) 436
Bse1I ACTGG 2 cut(s) 274, 897
Bse21I CCTNAGG 2 cut(s) 118, 1001
Bse3DI GCAATG 1 cut(s) 162
BseBI CCWGG 3 cut(s) 22, 299, 347
BseCI ATCGAT 2 cut(s) 630, 672
BseDI CCNNGG 4 cut(s) 258, 276, 297, 405
BseGI GGATG 3 cut(s) 307, 1043, 1104
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 5 cut(s) 132, 264, 611, 927, 1015
BseNI ACTGG 2 cut(s) 274, 897
BseXI GCAGC 1 cut(s) 1028
BseYI CCCAGC 1 cut(s) 786
Bsh1236I CGCG 2 cut(s) 203, 971
BshFI GGCC 2 cut(s) 89, 350
BshNI GGYRCC 1 cut(s) 272
BshVI ATCGAT 2 cut(s) 630, 672
BsiHKAI GWGCWC 3 cut(s) 80, 285, 626
BsiSI CCGG 2 cut(s) 405, 437
BslFI GGGAC 2 cut(s) 766, 1019
BsmAI GTCTC 2 cut(s) 23, 629
BsmFI GGGAC 2 cut(s) 766, 1019
BsnI GGCC 2 cut(s) 89, 350
Bsp1286I GDGCHC 3 cut(s) 80, 285, 626
Bsp1407I TGTACA 1 cut(s) 588
Bsp143I GATC 6 cut(s) 92, 304, 669, 702, 993, 1171
Bsp1720I GCTNAGC 1 cut(s) 620
Bsp68I TCGCGA 2 cut(s) 203, 971
BspACI CCGC 2 cut(s) 241, 955
BspANI GGCC 2 cut(s) 89, 350
BspCNI CTCAG 5 cut(s) 131, 263, 612, 928, 1014
BspDI ATCGAT 2 cut(s) 630, 672
BspFNI CGCG 2 cut(s) 203, 971
BspLI GGNNCC 2 cut(s) 274, 1007
BspMAI CTGCAG 1 cut(s) 1113
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 2 cut(s) 299, 710
BspQI GCTCTTC 1 cut(s) 527
BspT107I GGYRCC 1 cut(s) 272
BsrBI CCGCTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 162
BsrFI RCCGGY 1 cut(s) 436
BsrGI TGTACA 1 cut(s) 588
BsrI ACTGG 2 cut(s) 274, 897
BssAI RCCGGY 1 cut(s) 436
BssECI CCNNGG 4 cut(s) 258, 276, 297, 405
BssMI GATC 6 cut(s) 92, 304, 669, 702, 993, 1171
BssNI GRCGYC 1 cut(s) 360
BssT1I CCWWGG 2 cut(s) 258, 276
Bst2UI CCWGG 3 cut(s) 22, 299, 347
Bst4CI ACNGT 3 cut(s) 829, 859, 1151
Bst6I CTCTTC 1 cut(s) 527
BstACI GRCGYC 1 cut(s) 360
BstAUI TGTACA 1 cut(s) 588
BstDEI CTNAG 6 cut(s) 118, 250, 620, 936, 941, 1001
BstEII GGTNACC 1 cut(s) 122
BstF5I GGATG 3 cut(s) 307, 1043, 1104
BstFNI CGCG 2 cut(s) 203, 971
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 6 cut(s) 95, 307, 672, 705, 996, 1174
BstMAI GTCTC 2 cut(s) 23, 629
BstMBI GATC 6 cut(s) 92, 304, 669, 702, 993, 1171
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstNI CCWGG 3 cut(s) 22, 299, 347
BstNSI RCATGY 1 cut(s) 1192
BstPI GGTNACC 1 cut(s) 122
BstSCI CCNGG 4 cut(s) 20, 297, 345, 404
BstSFI CTRYAG 2 cut(s) 747, 1109
BstUI CGCG 2 cut(s) 203, 971
BstV1I GCAGC 1 cut(s) 1028
BstV2I GAAGAC 1 cut(s) 63
BstXI CCANNNNNNTGG 1 cut(s) 860
Bsu15I ATCGAT 2 cut(s) 630, 672
Bsu36I CCTNAGG 2 cut(s) 118, 1001
BsuRI GGCC 2 cut(s) 89, 350
BsuTUI ATCGAT 2 cut(s) 630, 672
BtgZI GCGATG 1 cut(s) 184
BtsCI GGATG 3 cut(s) 307, 1043, 1104
BtsIMutI CAGTG 2 cut(s) 267, 1156
BtuMI TCGCGA 2 cut(s) 203, 971
BveI ACCTGC 1 cut(s) 322
CfoI GCGC 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 436
Cfr13I GGNCC 3 cut(s) 24, 88, 1006
ClaI ATCGAT 2 cut(s) 630, 672
CseI GACGC 1 cut(s) 349
Csp6I GTAC 6 cut(s) 451, 474, 589, 664, 764, 928
CspCI CAANNNNNGTGG 2 cut(s) 1132, 1167
CviAII CATG 3 cut(s) 652, 667, 1189
CviQI GTAC 6 cut(s) 451, 474, 589, 664, 764, 928
DdeI CTNAG 6 cut(s) 118, 250, 620, 936, 941, 1001
DpnI GATC 6 cut(s) 94, 306, 671, 704, 995, 1173
DpnII GATC 6 cut(s) 92, 304, 669, 702, 993, 1171
DraIII CACNNNGTG 1 cut(s) 41
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
Ecl136II GAGCTC 1 cut(s) 283
Eco130I CCWWGG 2 cut(s) 258, 276
Eco147I AGGCCT 1 cut(s) 350
Eco24I GRGCYC 1 cut(s) 285
Eco32I GATATC 1 cut(s) 1116
Eco47I GGWCC 2 cut(s) 24, 1006
Eco53kI GAGCTC 1 cut(s) 283
Eco57I CTGAAG 2 cut(s) 968, 1094
Eco81I CCTNAGG 2 cut(s) 118, 1001
Eco91I GGTNACC 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 1006
EcoO65I GGTNACC 1 cut(s) 122
EcoRII CCWGG 3 cut(s) 20, 297, 345
EcoRV GATATC 1 cut(s) 1116
EcoT14I CCWWGG 2 cut(s) 258, 276
EcoT22I ATGCAT 1 cut(s) 1043
EcoT38I GRGCYC 1 cut(s) 285
ErhI CCWWGG 2 cut(s) 258, 276
FaeI CATG 3 cut(s) 655, 670, 1192
FaqI GGGAC 2 cut(s) 766, 1019
FatI CATG 3 cut(s) 651, 666, 1188
Fnu4HI GCNGC 2 cut(s) 241, 1017
FokI GGATG 3 cut(s) 314, 1050, 1091
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 2 cut(s) 241, 1017
FspBI CTAG 2 cut(s) 915, 1025
GlaI GCGC 1 cut(s) 239
GluI GCNGC 2 cut(s) 241, 1017
GsaI CCCAGC 1 cut(s) 790
GsuI CTGGAG 1 cut(s) 794
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 2 cut(s) 89, 350
HapII CCGG 2 cut(s) 405, 437
HgaI GACGC 1 cut(s) 349
HhaI GCGC 1 cut(s) 240
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 3 cut(s) 655, 670, 1192
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HinfI GANTC 8 cut(s) 68, 293, 555, 655, 945, 958, 966, 1130
HpaII CCGG 2 cut(s) 405, 437
HphI GGTGA 5 cut(s) 62, 87, 500, 517, 988
Hpy166II GTNNAC 2 cut(s) 267, 589
Hpy188I TCNGA 5 cut(s) 47, 145, 660, 987, 1054
Hpy188III TCNNGA 7 cut(s) 202, 290, 397, 500, 773, 853, 970
Hpy8I GTNNAC 2 cut(s) 267, 589
Hpy99I CGWCG 1 cut(s) 511
HpyAV CCTTC 5 cut(s) 219, 343, 361, 982, 1069
HpyCH4III ACNGT 3 cut(s) 829, 859, 1151
HpyCH4IV ACGT 2 cut(s) 132, 662
HpyCH4V TGCA 5 cut(s) 167, 761, 878, 1041, 1111
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 6 cut(s) 118, 250, 620, 936, 941, 1001
HpySE526I ACGT 2 cut(s) 132, 662
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 3 cut(s) 655, 670, 1192
HspAI GCGC 1 cut(s) 238
Kzo9I GATC 6 cut(s) 92, 304, 669, 702, 993, 1171
LguI GCTCTTC 1 cut(s) 527
LmnI GCTCC 4 cut(s) 248, 259, 280, 775
Lsp1109I GCAGC 1 cut(s) 1028
LweI GCATC 3 cut(s) 433, 1028, 1050
MaeI CTAG 2 cut(s) 915, 1025
MaeII ACGT 2 cut(s) 132, 662
MaeIII GTNAC 9 cut(s) 50, 122, 463, 488, 811, 820, 833, 888, 1100
MalI GATC 6 cut(s) 94, 306, 671, 704, 995, 1173
MbiI CCGCTC 1 cut(s) 243
MboI GATC 6 cut(s) 92, 304, 669, 702, 993, 1171
MboII GAAGA 7 cut(s) 63, 114, 117, 514, 526, 699, 974
MfeI CAATTG 1 cut(s) 756
MhlI GDGCHC 3 cut(s) 80, 285, 626
MluCI AATT 4 cut(s) 608, 756, 1124, 1158
MlyI GAGTC 2 cut(s) 77, 287
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 6 cut(s) 41, 127, 164, 193, 815, 1010
Mph1103I ATGCAT 1 cut(s) 1043
MspI CCGG 2 cut(s) 405, 437
MspR9I CCNGG 4 cut(s) 22, 299, 347, 406
MunI CAATTG 1 cut(s) 756
MvaI CCWGG 3 cut(s) 22, 299, 347
MvnI CGCG 2 cut(s) 203, 971
MwoI GCNNNNNNNGC 1 cut(s) 229
NciI CCSGG 1 cut(s) 406
NdeII GATC 6 cut(s) 92, 304, 669, 702, 993, 1171
NlaIII CATG 3 cut(s) 655, 670, 1192
NlaIV GGNNCC 2 cut(s) 274, 1007
NmuCI GTSAC 5 cut(s) 50, 463, 488, 820, 1100
NruI TCGCGA 2 cut(s) 203, 971
NsiI ATGCAT 1 cut(s) 1043
NspI RCATGY 1 cut(s) 1192
PceI AGGCCT 1 cut(s) 350
PciI ACATGT 1 cut(s) 1188
PciSI GCTCTTC 1 cut(s) 527
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 473
PfeI GAWTC 6 cut(s) 555, 655, 945, 958, 966, 1130
PflFI GACNNNGTC 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 20
PkrI GCNGC 2 cut(s) 242, 1018
PleI GAGTC 2 cut(s) 76, 287
PpsI GAGTC 2 cut(s) 76, 287
PpuMI RGGWCCY 1 cut(s) 1006
PscI ACATGT 1 cut(s) 1188
Psp124BI GAGCTC 1 cut(s) 285
Psp5II RGGWCCY 1 cut(s) 1006
Psp6I CCWGG 3 cut(s) 20, 297, 345
PspEI GGTNACC 1 cut(s) 122
PspFI CCCAGC 1 cut(s) 786
PspGI CCWGG 3 cut(s) 20, 297, 345
PspN4I GGNNCC 2 cut(s) 274, 1007
PspPI GGNCC 3 cut(s) 24, 88, 1006
PspPPI RGGWCCY 1 cut(s) 1006
PstI CTGCAG 1 cut(s) 1113
PsyI GACNNNGTC 1 cut(s) 134
RruI TCGCGA 2 cut(s) 203, 971
RsaI GTAC 6 cut(s) 452, 475, 590, 665, 765, 929
RsaNI GTAC 6 cut(s) 451, 474, 589, 664, 764, 928
SacI GAGCTC 1 cut(s) 285
SapI GCTCTTC 1 cut(s) 527
SatI GCNGC 2 cut(s) 241, 1017
Sau3AI GATC 6 cut(s) 92, 304, 669, 702, 993, 1171
Sau96I GGNCC 3 cut(s) 24, 88, 1006
SchI GAGTC 2 cut(s) 77, 287
ScrFI CCNGG 4 cut(s) 22, 299, 347, 406
SduI GDGCHC 3 cut(s) 80, 285, 626
SfaNI GCATC 3 cut(s) 433, 1028, 1050
SfcI CTRYAG 2 cut(s) 747, 1109
SinI GGWCC 2 cut(s) 24, 1006
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 4 cut(s) 608, 756, 1124, 1158
SseBI AGGCCT 1 cut(s) 350
SsiI CCGC 2 cut(s) 241, 955
SspMI CTAG 2 cut(s) 915, 1025
SstI GAGCTC 1 cut(s) 285
StuI AGGCCT 1 cut(s) 350
StyD4I CCNGG 4 cut(s) 20, 297, 345, 404
StyI CCWWGG 2 cut(s) 258, 276
TaaI ACNGT 3 cut(s) 829, 859, 1151
TaiI ACGT 2 cut(s) 135, 665
TaqI TCGA 5 cut(s) 74, 561, 630, 672, 948
TaqII GACCGA 1 cut(s) 41
TasI AATT 4 cut(s) 608, 756, 1124, 1158
TatI WGTACW 4 cut(s) 450, 588, 763, 927
TauI GCSGC 1 cut(s) 243
TfiI GAWTC 6 cut(s) 555, 655, 945, 958, 966, 1130
TscAI CASTG 2 cut(s) 274, 1156
TseFI GTSAC 5 cut(s) 50, 463, 488, 820, 1100
TseI GCWGC 1 cut(s) 1016
Tsp45I GTSAC 5 cut(s) 50, 463, 488, 820, 1100
TspDTI ATGAA 5 cut(s) 325, 343, 445, 526, 547
TspRI CASTG 2 cut(s) 274, 1156
Tth111I GACNNNGTC 1 cut(s) 134
VpaK11BI GGWCC 2 cut(s) 24, 1006
XceI RCATGY 1 cut(s) 1192
XspI CTAG 2 cut(s) 915, 1025
Zsp2I ATGCAT 1 cut(s) 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.