pycom17g16760

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0018346
Physical Location & Seq
Reverse (-)
14779848 .. 14780298
451 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 399 bp
ATGGGATATGAGTTCTACCATCCTGACGACCAGAAAGTCTTTGTCGCCAGAACTGCTAAGTTTCTAGAGGACGAATTTGTTCTCAAAGGAACTATAAGTAAAACGATGGAAATTAATGAGATTAAAGATGAACCACAAACAAGCACAAGACATATTGACAACCATGTTCCTGGACCCCAAGCTCCACGTAGATCTGAAAGGGTTAGTAAGCCACCTAAGAGGTATGGCTTAGACAATGACTTTGCGGAATTGTACCTTCTGGGTGACAATGACACAAAGGAGGACCCTAGGGACTACAAAGAAGCAATGTCCGACATTGATTCAAAGAGATGGCAAGAGGCCATGAAATCCGAGATGGATTCCATGTATCAAAATCAGGGGTCTTCAAGAGGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
rve

Protein Analysis

133

Amino Acids

15.41

Weight (kDa)

5.25

Isoelectric Point (pI)

53.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09832
malus_domestica MD17G1125600.v1.1
pyrus_communis pycom07g08290 pycom08g03650 pycom10g05700 pycom13g21050 pycom17g16760
rosa_wichuraiana Rw1G014600 Rw4G005310 Rw4G016610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 35
AciI CCGC 1 cut(s) 245
AcsI RAATTY 1 cut(s) 74
AfaI GTAC 1 cut(s) 254
AgsI TTSAA 2 cut(s) 324, 387
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
AoxI GGCC 1 cut(s) 339
ApoI RAATTY 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AseI ATTAAT 1 cut(s) 114
Asp700I GAANNNNTTC 1 cut(s) 78
AspA2I CCTAGG 1 cut(s) 287
AspS9I GGNCC 2 cut(s) 173, 283
AsuHPI GGTGA 1 cut(s) 275
AvaII GGWCC 2 cut(s) 173, 283
AvrII CCTAGG 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 375
BccI CCATC 4 cut(s) 27, 100, 324, 349
BciT130I CCWGG 1 cut(s) 171
BfaI CTAG 2 cut(s) 65, 288
BglII AGATCT 1 cut(s) 191
BlnI CCTAGG 1 cut(s) 287
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 2 cut(s) 173, 283
BmgT120I GGNCC 2 cut(s) 173, 283
BmiI GGNNCC 2 cut(s) 175, 285
BmrFI CCNGG 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 375
BsaAI YACGTR 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 287
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 287
BseGI GGATG 1 cut(s) 19
BseMI GCAATG 1 cut(s) 312
BshFI GGCC 1 cut(s) 341
BslFI GGGAC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 1 cut(s) 341
Bsp143I GATC 1 cut(s) 191
BspACI CCGC 1 cut(s) 245
BspANI GGCC 1 cut(s) 341
BspLI GGNNCC 2 cut(s) 175, 285
BsrDI GCAATG 1 cut(s) 312
BssECI CCNNGG 1 cut(s) 287
BssMI GATC 1 cut(s) 191
BssT1I CCWWGG 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 171
BstBAI YACGTR 1 cut(s) 188
BstDEI CTNAG 3 cut(s) 57, 216, 229
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 1 cut(s) 194
BstMBI GATC 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 191
BstXI CCANNNNNNTGG 1 cut(s) 170
BstYI RGATCY 1 cut(s) 191
BsuRI GGCC 1 cut(s) 341
BtsCI GGATG 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 173, 283
Csp6I GTAC 1 cut(s) 253
CviAII CATG 3 cut(s) 164, 343, 364
CviJI RGCY 4 cut(s) 182, 211, 228, 341
CviKI_1 RGCY 4 cut(s) 182, 211, 228, 341
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 3 cut(s) 57, 216, 229
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
DrdI GACNNNNNNGTC 1 cut(s) 35
DseDI GACNNNNNNGTC 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 287
Eco47I GGWCC 2 cut(s) 173, 283
EcoO109I RGGNCCY 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 3 cut(s) 167, 346, 367
FaiI YATR 7 cut(s) 9, 95, 153, 165, 225, 344, 365
FaqI GGGAC 1 cut(s) 305
FatI CATG 3 cut(s) 163, 342, 363
FokI GGATG 1 cut(s) 6
FspBI CTAG 2 cut(s) 65, 288
HaeIII GGCC 1 cut(s) 341
Hin1II CATG 3 cut(s) 167, 346, 367
HinfI GANTC 2 cut(s) 320, 359
HphI GGTGA 1 cut(s) 275
Hpy188I TCNGA 3 cut(s) 196, 313, 352
Hpy188III TCNNGA 3 cut(s) 23, 65, 387
HpyAV CCTTC 1 cut(s) 266
HpyCH4IV ACGT 1 cut(s) 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 3 cut(s) 57, 216, 229
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 3 cut(s) 167, 346, 367
Kzo9I GATC 1 cut(s) 191
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 7 cut(s) 36, 44, 61, 156, 183, 245, 362
MaeI CTAG 2 cut(s) 65, 288
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 263
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MboII GAAGA 1 cut(s) 375
MflI RGATCY 1 cut(s) 191
MluCI AATT 3 cut(s) 74, 111, 248
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 5 cut(s) 61, 213, 274, 331, 383
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 2 cut(s) 114, 123
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 1 cut(s) 191
NlaIII CATG 3 cut(s) 167, 346, 367
NlaIV GGNNCC 2 cut(s) 175, 285
NmuCI GTSAC 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 78
PfeI GAWTC 2 cut(s) 320, 359
PfoI TCCNGGA 1 cut(s) 169
Ppu21I YACGTR 1 cut(s) 188
PpuMI RGGWCCY 1 cut(s) 283
PshBI ATTAAT 1 cut(s) 114
Psp5II RGGWCCY 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 2 cut(s) 175, 285
PspPI GGNCC 2 cut(s) 173, 283
PspPPI RGGWCCY 1 cut(s) 283
PsuI RGATCY 1 cut(s) 191
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SaqAI TTAA 2 cut(s) 114, 123
Sau3AI GATC 1 cut(s) 191
Sau96I GGNCC 2 cut(s) 173, 283
ScrFI CCNGG 1 cut(s) 171
SetI ASST 5 cut(s) 184, 190, 217, 224, 258
SinI GGWCC 2 cut(s) 173, 283
Sse9I AATT 3 cut(s) 74, 111, 248
SsiI CCGC 1 cut(s) 245
SspMI CTAG 2 cut(s) 65, 288
StyD4I CCNGG 1 cut(s) 169
StyI CCWWGG 1 cut(s) 287
TaiI ACGT 1 cut(s) 190
TasI AATT 3 cut(s) 74, 111, 248
TfiI GAWTC 2 cut(s) 320, 359
Tru1I TTAA 2 cut(s) 114, 123
Tru9I TTAA 2 cut(s) 114, 123
TseFI GTSAC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 2 cut(s) 144, 359
VpaK11BI GGWCC 2 cut(s) 173, 283
VspI ATTAAT 1 cut(s) 114
XapI RAATTY 1 cut(s) 74
XbaI TCTAGA 1 cut(s) 64
XmaJI CCTAGG 1 cut(s) 287
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 2 cut(s) 65, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.