Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0020452

Physical Location & Seq

Genomic Coordinates Forward (+)

15683331 .. 15684112

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g18270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCAGGAATGCGTCATGGCCACTCTAGCAAAGAAAATTGTACTTCTGGTGACTCATCAAGTTGAATTCCTCTCAGAAGTTGATAAAATTCTAGTACATTCAAATTATTTTTCTCATGAAACCTTGTTTCATTTGCAGGTAATGGAGGTTGGACATGTTACTCAATCCGGAAGCTATGAGAGTTTTTTGACAGCAGGAACAGCATTTGAGCAACTTGTACATGCTCATAGAGATACGAATCTAAAAAGGGAGATATATTTCGGCCAGAGGAACTTTAGGTGGCTTACCTCACTACAAATAACAGTGAAGGGTGTGCCTGGCGTGCAACTAATAGAAGAAGAAGAGAAAGGGATTGGTGATGTTGGATTGAAACCCATTCGGGATTATTTTCTTGTGTCTAAAGGAACTCTTCTTCTAATCTTAGGCATAATGGCACAATCTGGTTTTATTGGATTTCAGGTTGTTTCAACTTATTGGCTAACTCTAGGCATTCAAATGCCTAACATAACCAATGGCATGCTCATCAGCGTTTATACAGCTATTTCAACATTTAGTGCTCTGTTTGTATATCTAAGGTCATTTTCAACAGCTCATATGGGATTGAAAACTTCCAAAGCCTTCTTCTTTGGTTTCAACGATGCTATATTTAAGGCTCCTATACTTTTCTTTGACTCAACCCCTGCTAGTTGGATTTTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

234

Amino Acids

26.2

Weight (kDa)

6.7

Isoelectric Point (pI)

32.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020452)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g18270
rosa_chinensis	RchiOBHm_Chr2g0142751
rosa_samantha	Rh2BG437300 Rh2BG489800 Rh2DG447000 Rh2DG498600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	127
AccIII	TCCGGA	1 cut(s)	167
AcoI	YGGCCR	2 cut(s)	18, 262
AcsI	RAATTY	2 cut(s)	65, 87
AfaI	GTAC	3 cut(s)	42, 96, 219
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	9 cut(s)	65, 102, 370, 468, 494, 546, 585, 604, 634
AjnI	CCWGG	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	2 cut(s)	605, 637
AluBI	AGCT	3 cut(s)	174, 539, 590
AluI	AGCT	3 cut(s)	174, 539, 590
Alw21I	GWGCWC	1 cut(s)	559
Aor13HI	TCCGGA	1 cut(s)	167
AoxI	GGCC	2 cut(s)	18, 262
ApoI	RAATTY	2 cut(s)	65, 87
AsuHPI	GGTGA	2 cut(s)	61, 368
BalI	TGGCCA	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	559
BciT130I	CCWGG	1 cut(s)	318
BfaI	CTAG	4 cut(s)	26, 92, 485, 684
BfuAI	ACCTGC	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	318
BmiI	GGNNCC	1 cut(s)	654
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	1 cut(s)	628
BsaBI	GATNNNNATC	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	167
Bse8I	GATNNNNATC	1 cut(s)	237
BseAI	TCCGGA	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	318
BseJI	GATNNNNATC	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	20, 264
BsiHKAI	GWGCWC	1 cut(s)	559
BsiSI	CCGG	1 cut(s)	168
BsmI	GAATGC	2 cut(s)	14, 489
BsnI	GGCC	2 cut(s)	20, 264
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp13I	TCCGGA	1 cut(s)	167
Bsp1407I	TGTACA	1 cut(s)	217
BspANI	GGCC	2 cut(s)	20, 264
BspCNI	CTCAG	1 cut(s)	86
BspEI	TCCGGA	1 cut(s)	167
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	654
BspMI	ACCTGC	1 cut(s)	127
BsrGI	TGTACA	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	2 cut(s)	336, 414
BstAUI	TGTACA	1 cut(s)	217
BstC8I	GCNNGC	2 cut(s)	323, 518
BstDEI	CTNAG	3 cut(s)	73, 421, 572
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 200, 322
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	3 cut(s)	158, 224, 520
BstSCI	CCNGG	1 cut(s)	316
BsuRI	GGCC	2 cut(s)	20, 264
BtsIMutI	CAGTG	1 cut(s)	309
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	2 cut(s)	323, 518
CciI	TCATGA	1 cut(s)	115
Csp6I	GTAC	3 cut(s)	41, 95, 218
CviAII	CATG	5 cut(s)	16, 116, 155, 221, 517
CviJI	RGCY	9 cut(s)	20, 174, 264, 283, 478, 539, 590, 617, 653
CviKI_1	RGCY	9 cut(s)	20, 174, 264, 283, 478, 539, 590, 617, 653
CviQI	GTAC	3 cut(s)	41, 95, 218
DdeI	CTNAG	3 cut(s)	73, 421, 572
EaeI	YGGCCR	2 cut(s)	18, 262
Eam1104I	CTCTTC	2 cut(s)	336, 414
EarI	CTCTTC	2 cut(s)	336, 414
EcoRI	GAATTC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	316
FaeI	CATG	5 cut(s)	19, 119, 158, 224, 520
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FatI	CATG	5 cut(s)	15, 115, 154, 220, 516
FauNDI	CATATG	1 cut(s)	594
FspBI	CTAG	4 cut(s)	26, 92, 485, 684
HaeIII	GGCC	2 cut(s)	20, 264
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	5 cut(s)	19, 119, 158, 224, 520
HinfI	GANTC	3 cut(s)	52, 238, 671
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	2 cut(s)	61, 368
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	3 cut(s)	116, 168, 380
HpyAV	CCTTC	2 cut(s)	301, 628
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4V	TGCA	3 cut(s)	4, 136, 325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 200, 322
HpyF3I	CTNAG	3 cut(s)	73, 421, 572
Hsp92II	CATG	5 cut(s)	19, 119, 158, 224, 520
Kpn2I	TCCGGA	1 cut(s)	167
LmnI	GCTCC	1 cut(s)	658
LweI	GCATC	1 cut(s)	628
MaeI	CTAG	4 cut(s)	26, 92, 485, 684
MaeIII	GTNAC	2 cut(s)	49, 157
MboII	GAAGA	6 cut(s)	347, 350, 353, 401, 404, 613
MhlI	GDGCHC	1 cut(s)	559
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	4 cut(s)	36, 65, 87, 103
MluNI	TGGCCA	1 cut(s)	20
MlyI	GAGTC	2 cut(s)	46, 665
MmeI	TCCRAC	3 cut(s)	130, 343, 668
MnlI	CCTC	4 cut(s)	80, 139, 261, 298
Mox20I	TGGCCA	1 cut(s)	20
MroI	TCCGGA	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	20
MseI	TTAA	1 cut(s)	648
MslI	CAYNNNNRTG	1 cut(s)	494
Msp20I	TGGCCA	1 cut(s)	20
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	318
Mva1269I	GAATGC	2 cut(s)	14, 489
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	3 cut(s)	26, 200, 322
NdeI	CATATG	1 cut(s)	594
NlaIII	CATG	5 cut(s)	19, 119, 158, 224, 520
NlaIV	GGNNCC	1 cut(s)	654
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	3 cut(s)	158, 224, 520
PaeI	GCATGC	1 cut(s)	520
PagI	TCATGA	1 cut(s)	115
PciI	ACATGT	1 cut(s)	154
PctI	GAATGC	2 cut(s)	14, 489
PfeI	GAWTC	1 cut(s)	238
PleI	GAGTC	2 cut(s)	46, 665
PpsI	GAGTC	2 cut(s)	46, 665
PscI	ACATGT	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	654
RsaI	GTAC	3 cut(s)	42, 96, 219
RsaNI	GTAC	3 cut(s)	41, 95, 218
RseI	CAYNNNNRTG	1 cut(s)	494
SaqAI	TTAA	1 cut(s)	648
SchI	GAGTC	2 cut(s)	46, 665
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	1 cut(s)	559
SfaNI	GCATC	1 cut(s)	628
SmiMI	CAYNNNNRTG	1 cut(s)	494
SphI	GCATGC	1 cut(s)	520
Sse9I	AATT	4 cut(s)	36, 65, 87, 103
SspMI	CTAG	4 cut(s)	26, 92, 485, 684
StyD4I	CCNGG	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	304
TasI	AATT	4 cut(s)	36, 65, 87, 103
TatI	WGTACW	3 cut(s)	40, 94, 217
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	1 cut(s)	648
Tru9I	TTAA	1 cut(s)	648
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	119, 132
TspRI	CASTG	1 cut(s)	309
XapI	RAATTY	2 cut(s)	65, 87
XceI	RCATGY	3 cut(s)	158, 224, 520
XspI	CTAG	4 cut(s)	26, 92, 485, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.