Rh2BG489800

ABC transporter C family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0020452
Physical Location & Seq
Forward (+)
68944073 .. 68945856
1784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG489800.1

Sequence Viewer

Length: 981 bp
ATGCATTGTTTTCAACAGTGCTCCTCTAAATGCAAGTACTATATTCACAGTTCTAGCATCATTGAGGCACAATTTGAAAAGGCTTATGGAACTGTCATGTATTGGATGGCACCAACCATCATCTCTTCGGTTGTTTTTCTAGGATGCATTGTTTTCAACAGTGCTCCTGTAAATGCAAGTACTATATTCACAGTTCTAGCATCATTGAAAAGCATGGGGGAACCTGTCAGGTTTATACCGGAAGCACTTTCAGTTATGATACAAGTCAAGGTCTCGTTTGATCGGCTGAATTTTTTTCTGCTTGAAAATGAGCTAAAGGATAGTGAAATAAGGAAAGTCCCATCACAGAATTCAGATGAGAGCTTAAAAATAGAAAGTGGCACGTTCAGCTGGGATCCTGAACTAACAACGATCCCAACTCTGAGAGATGTGAATTTGGAAGTAAAATGGGAGCAGAAAATTGCAGTTTGTGGACCAGTTGGTGCTGGAAAATCATCACTTTTGCATGCTTTACTTGGAGAGATGCCCAAAATGTCAGGAATGCTTGTGAATGCTCACAAAGATGCAGTAACAACATTGGGTCCTTCAAACTATCAAGTTCAAGAAGATTCTGAAAAGGAAGATATGATCCAGCCAGAGGAGTCTTATGGGAGTAACCGTAGTGTACCTGGGGTGCAGCTAACAGAAGAAGAAGAGAAGGTGATTGGTGATGTGGGGTTGAAGCCCTTTTGGGATTACATTTTTGTTTCTAAGGCAACACTTCTTCTTTGCTTAGGCACAATAGCGCCGATTGGTTTTCTTGGTCTTCAGGTTGCTTCAACTTACTGGCTAGCTCTAGCCATTCAAATTCCTAAAATAACTAGCGGCATACTCATCGGAGTTTATACTGCAGTATCAACACTTGGTGTTGTCTTTGTATTTCTAAGGTCATACTTCGCAGCCCTTATGGGATTGAAGGCGTCTAGAGCATTTTTTCTGTAG

Protein Analysis

326

Amino Acids

35.93

Weight (kDa)

5.37

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 141 - 243 5.6e-07 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020452)

Species Orthologous Gene IDs
pyrus_communis pycom17g18270
rosa_chinensis RchiOBHm_Chr2g0142751
rosa_samantha Rh2BG437300 Rh2BG489800 Rh2DG447000 Rh2DG498600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 109
AciI CCGC 1 cut(s) 864
AclWI GGATC 4 cut(s) 389, 402, 406, 622
AcsI RAATTY 4 cut(s) 289, 349, 433, 846
AcuI CTGAAG 1 cut(s) 791
AcyI GRCGYC 1 cut(s) 959
AdeI CACNNNGTG 1 cut(s) 905
AfaI GTAC 3 cut(s) 38, 181, 666
AfiI CCNNNNNNNGG 1 cut(s) 637
AjnI CCWGG 1 cut(s) 667
AluBI AGCT 5 cut(s) 313, 363, 390, 679, 833
AluI AGCT 5 cut(s) 313, 363, 390, 679, 833
Alw21I GWGCWC 2 cut(s) 23, 166
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 4 cut(s) 389, 402, 406, 622
ApeKI GCWGC 2 cut(s) 676, 938
ApoI RAATTY 4 cut(s) 289, 349, 433, 846
AspLEI GCGC 1 cut(s) 787
AspS9I GGNCC 2 cut(s) 473, 581
AsuHPI GGTGA 2 cut(s) 712, 719
AsuNHI GCTAGC 1 cut(s) 829
AvaII GGWCC 2 cut(s) 473, 581
BaeI ACNNNNGTAYC 2 cut(s) 876, 909
BamHI GGATCC 1 cut(s) 394
BanI GGYRCC 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 797
Bbv12I GWGCWC 2 cut(s) 23, 166
BbvI GCAGC 2 cut(s) 688, 950
BccI CCATC 3 cut(s) 100, 125, 349
BcgI CGANNNNNNTGC 2 cut(s) 856, 890
BciT130I CCWGG 1 cut(s) 669
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 7 cut(s) 54, 140, 197, 830, 836, 861, 963
BfmI CTRYAG 2 cut(s) 888, 977
BfoI RGCGCY 1 cut(s) 788
BisI GCNGC 3 cut(s) 677, 865, 939
BlsI GCNGC 3 cut(s) 678, 866, 940
BmcAI AGTACT 2 cut(s) 38, 181
Bme1390I CCNGG 1 cut(s) 669
Bme18I GGWCC 2 cut(s) 473, 581
BmgT120I GGNCC 2 cut(s) 473, 581
BmiI GGNNCC 4 cut(s) 111, 222, 396, 582
BmrFI CCNGG 1 cut(s) 669
BmsI GCATC 5 cut(s) 66, 134, 209, 513, 553
BmtI GCTAGC 1 cut(s) 833
BpiI GAAGAC 1 cut(s) 797
Bpu10I CCTNAGC 1 cut(s) 772
BsaHI GRCGYC 1 cut(s) 959
BsaI GGTCTC 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 668
BsaWI WCCGGW 1 cut(s) 238
BsaXI ACNNNNNCTCC 2 cut(s) 643, 673
Bsc4I CCNNNNNNNGG 1 cut(s) 637
Bse1I ACTGG 2 cut(s) 476, 830
BseBI CCWGG 1 cut(s) 669
BseDI CCNNGG 1 cut(s) 668
BseGI GGATG 2 cut(s) 111, 149
BseLI CCNNNNNNNGG 1 cut(s) 637
BseMII CTCAG 1 cut(s) 413
BseNI ACTGG 2 cut(s) 476, 830
BseRI GAGGAG 2 cut(s) 13, 653
BseXI GCAGC 2 cut(s) 688, 950
BseYI CCCAGC 1 cut(s) 390
BsgI GTGCAG 1 cut(s) 695
BshNI GGYRCC 1 cut(s) 109
BsiHKAI GWGCWC 2 cut(s) 23, 166
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 1 cut(s) 637
BsmAI GTCTC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 323
BsmI GAATGC 2 cut(s) 546, 556
Bso31I GGTCTC 1 cut(s) 277
Bsp1286I GDGCHC 2 cut(s) 23, 166
Bsp143I GATC 4 cut(s) 280, 394, 411, 627
BspACI CCGC 1 cut(s) 864
BspCNI CTCAG 1 cut(s) 414
BspLI GGNNCC 4 cut(s) 111, 222, 396, 582
BspMAI CTGCAG 1 cut(s) 892
BspOI GCTAGC 1 cut(s) 833
BspPI GGATC 4 cut(s) 389, 402, 406, 622
BspT107I GGYRCC 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 277
BsrI ACTGG 2 cut(s) 476, 830
BssECI CCNNGG 1 cut(s) 668
BssMI GATC 4 cut(s) 280, 394, 411, 627
BssNI GRCGYC 1 cut(s) 959
Bst2UI CCWGG 1 cut(s) 669
Bst4CI ACNGT 6 cut(s) 18, 50, 94, 161, 193, 659
Bst6I CTCTTC 2 cut(s) 130, 687
BstACI GRCGYC 1 cut(s) 959
BstC8I GCNNGC 2 cut(s) 507, 831
BstDEI CTNAG 4 cut(s) 422, 750, 772, 923
BstF5I GGATG 2 cut(s) 111, 149
BstH2I RGCGCY 1 cut(s) 788
BstHHI GCGC 1 cut(s) 787
BstKTI GATC 4 cut(s) 283, 397, 414, 630
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 4 cut(s) 280, 394, 411, 627
BstMWI GCNNNNNNNGC 2 cut(s) 387, 965
BstNI CCWGG 1 cut(s) 669
BstNSI RCATGY 1 cut(s) 509
BstSCI CCNGG 1 cut(s) 667
BstSFI CTRYAG 2 cut(s) 888, 977
BstV1I GCAGC 2 cut(s) 688, 950
BstV2I GAAGAC 1 cut(s) 797
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BtsCI GGATG 2 cut(s) 111, 149
BtsIMutI CAGTG 2 cut(s) 23, 166
Cac8I GCNNGC 2 cut(s) 507, 831
CfoI GCGC 1 cut(s) 787
Cfr13I GGNCC 2 cut(s) 473, 581
CseI GACGC 1 cut(s) 948
Csp6I GTAC 3 cut(s) 37, 180, 665
CviAII CATG 3 cut(s) 97, 214, 506
CviQI GTAC 3 cut(s) 37, 180, 665
DdeI CTNAG 4 cut(s) 422, 750, 772, 923
DpnI GATC 4 cut(s) 282, 396, 413, 629
DpnII GATC 4 cut(s) 280, 394, 411, 627
DraIII CACNNNGTG 1 cut(s) 905
Eam1104I CTCTTC 2 cut(s) 130, 687
EarI CTCTTC 2 cut(s) 130, 687
Eco31I GGTCTC 1 cut(s) 277
Eco47I GGWCC 2 cut(s) 473, 581
Eco57I CTGAAG 1 cut(s) 791
EcoO109I RGGNCCY 1 cut(s) 581
EcoRI GAATTC 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 667
EcoT22I ATGCAT 2 cut(s) 6, 149
FaeI CATG 3 cut(s) 100, 217, 509
FaqI GGGAC 1 cut(s) 323
FatI CATG 3 cut(s) 96, 213, 505
Fnu4HI GCNGC 3 cut(s) 677, 865, 939
FokI GGATG 2 cut(s) 118, 156
Fsp4HI GCNGC 3 cut(s) 677, 865, 939
FspBI CTAG 7 cut(s) 54, 140, 197, 830, 836, 861, 963
GlaI GCGC 1 cut(s) 786
GluI GCNGC 3 cut(s) 677, 865, 939
GsaI CCCAGC 1 cut(s) 394
HaeII RGCGCY 1 cut(s) 788
HapII CCGG 1 cut(s) 239
HgaI GACGC 1 cut(s) 948
HhaI GCGC 1 cut(s) 787
Hin1I GRCGYC 1 cut(s) 959
Hin1II CATG 3 cut(s) 100, 217, 509
Hin6I GCGC 1 cut(s) 785
HinP1I GCGC 1 cut(s) 785
HinfI GANTC 2 cut(s) 608, 641
HpaII CCGG 1 cut(s) 239
HphI GGTGA 2 cut(s) 712, 719
Hpy166II GTNNAC 2 cut(s) 473, 665
Hpy188I TCNGA 4 cut(s) 355, 423, 613, 878
Hpy188III TCNNGA 4 cut(s) 398, 537, 602, 963
Hpy8I GTNNAC 2 cut(s) 473, 665
HpyAV CCTTC 3 cut(s) 594, 691, 949
HpyCH4III ACNGT 6 cut(s) 18, 50, 94, 161, 193, 659
HpyCH4IV ACGT 1 cut(s) 383
HpyCH4V TGCA 9 cut(s) 4, 33, 147, 176, 464, 505, 566, 676, 890
HpyF10VI GCNNNNNNNGC 2 cut(s) 387, 965
HpyF3I CTNAG 4 cut(s) 422, 750, 772, 923
HpySE526I ACGT 1 cut(s) 383
Hsp92I GRCGYC 1 cut(s) 959
Hsp92II CATG 3 cut(s) 100, 217, 509
HspAI GCGC 1 cut(s) 785
Kzo9I GATC 4 cut(s) 280, 394, 411, 627
LmnI GCTCC 3 cut(s) 26, 169, 451
Lsp1109I GCAGC 2 cut(s) 688, 950
LweI GCATC 5 cut(s) 66, 134, 209, 513, 553
MaeI CTAG 7 cut(s) 54, 140, 197, 830, 836, 861, 963
MaeII ACGT 1 cut(s) 383
MaeIII GTNAC 2 cut(s) 568, 653
MalI GATC 4 cut(s) 282, 396, 413, 629
MboI GATC 4 cut(s) 280, 394, 411, 627
MboII GAAGA 8 cut(s) 117, 617, 632, 698, 701, 704, 755, 797
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 2 cut(s) 23, 166
MluCI AATT 6 cut(s) 71, 289, 349, 433, 459, 846
MlyI GAGTC 1 cut(s) 650
MnlI CCTC 3 cut(s) 34, 58, 631
Mph1103I ATGCAT 2 cut(s) 6, 149
MseI TTAA 1 cut(s) 365
MslI CAYNNNNRTG 1 cut(s) 561
MspA1I CMGCKG 1 cut(s) 390
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 669
Mva1269I GAATGC 2 cut(s) 546, 556
MvaI CCWGG 1 cut(s) 669
MwoI GCNNNNNNNGC 2 cut(s) 387, 965
NdeII GATC 4 cut(s) 280, 394, 411, 627
NheI GCTAGC 1 cut(s) 829
NlaIII CATG 3 cut(s) 100, 217, 509
NlaIV GGNNCC 4 cut(s) 111, 222, 396, 582
NsiI ATGCAT 2 cut(s) 6, 149
NspI RCATGY 1 cut(s) 509
PaeI GCATGC 1 cut(s) 509
PctI GAATGC 2 cut(s) 546, 556
PfeI GAWTC 1 cut(s) 608
PkrI GCNGC 3 cut(s) 678, 866, 940
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
PpuMI RGGWCCY 1 cut(s) 581
Psp5II RGGWCCY 1 cut(s) 581
Psp6I CCWGG 1 cut(s) 667
PspFI CCCAGC 1 cut(s) 390
PspGI CCWGG 1 cut(s) 667
PspN4I GGNNCC 4 cut(s) 111, 222, 396, 582
PspPI GGNCC 2 cut(s) 473, 581
PspPPI RGGWCCY 1 cut(s) 581
PstI CTGCAG 1 cut(s) 892
PsuI RGATCY 1 cut(s) 394
PvuII CAGCTG 1 cut(s) 390
RsaI GTAC 3 cut(s) 38, 181, 666
RsaNI GTAC 3 cut(s) 37, 180, 665
RseI CAYNNNNRTG 1 cut(s) 561
SaqAI TTAA 1 cut(s) 365
SatI GCNGC 3 cut(s) 677, 865, 939
Sau3AI GATC 4 cut(s) 280, 394, 411, 627
Sau96I GGNCC 2 cut(s) 473, 581
ScaI AGTACT 2 cut(s) 38, 181
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 1 cut(s) 669
SduI GDGCHC 2 cut(s) 23, 166
SfaNI GCATC 5 cut(s) 66, 134, 209, 513, 553
SfcI CTRYAG 2 cut(s) 888, 977
SinI GGWCC 2 cut(s) 473, 581
SmiMI CAYNNNNRTG 1 cut(s) 561
SphI GCATGC 1 cut(s) 509
Sse9I AATT 6 cut(s) 71, 289, 349, 433, 459, 846
SsiI CCGC 1 cut(s) 864
SspMI CTAG 7 cut(s) 54, 140, 197, 830, 836, 861, 963
StyD4I CCNGG 1 cut(s) 667
TaaI ACNGT 6 cut(s) 18, 50, 94, 161, 193, 659
TaiI ACGT 1 cut(s) 386
TasI AATT 6 cut(s) 71, 289, 349, 433, 459, 846
TatI WGTACW 2 cut(s) 36, 179
TauI GCSGC 1 cut(s) 867
TfiI GAWTC 1 cut(s) 608
Tru1I TTAA 1 cut(s) 365
Tru9I TTAA 1 cut(s) 365
TscAI CASTG 2 cut(s) 23, 166
TseI GCWGC 2 cut(s) 676, 938
TspRI CASTG 2 cut(s) 23, 166
VpaK11BI GGWCC 2 cut(s) 473, 581
XapI RAATTY 4 cut(s) 289, 349, 433, 846
XbaI TCTAGA 1 cut(s) 962
XceI RCATGY 1 cut(s) 509
XspI CTAG 7 cut(s) 54, 140, 197, 830, 836, 861, 963
ZrmI AGTACT 2 cut(s) 38, 181
Zsp2I ATGCAT 2 cut(s) 6, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.