Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0020452

Physical Location & Seq

Genomic Coordinates Reverse (-)

61916798 .. 61917239

Gene Structure 442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG437300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCATCAAGTAGAGTTTCTCTCAGAATTTGATCAAATTTTGGTGATGGAGGGTGGACAAATTACTCAATCCGAAAGCTACGACGGTCTCTTGACAGAAGGAACAGCATTTAAGCAGCTTGTGCGTGCTCATGGATGTACAGTAACCACATTGGGTCCTTCAAGTTATAAAAGCGAAATAGCAAATAAAAATGAAGATATGGTCCAGCCAGAGGAGTCTTTCCGGACTAACCTCCCTAGAGATAGCAGTGAAGAGGACATATTTTTGAAGGGTGCAACTTACAGAAGAAGAAAAGAAAGAGATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

102

Amino Acids

11.71

Weight (kDa)

4.87

Isoelectric Point (pI)

71.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020452)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g18270
rosa_chinensis	RchiOBHm_Chr2g0142751
rosa_samantha	Rh2BG437300 Rh2BG489800 Rh2DG447000 Rh2DG498600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	168
AccIII	TCCGGA	1 cut(s)	222
AcsI	RAATTY	2 cut(s)	26, 36
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	2 cut(s)	162, 268
AluBI	AGCT	2 cut(s)	78, 118
AluI	AGCT	2 cut(s)	78, 118
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	92
Aor13HI	TCCGGA	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	2 cut(s)	26, 36
AspS9I	GGNCC	2 cut(s)	155, 202
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	2 cut(s)	155, 202
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	40
BclI	TGATCA	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	237
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme18I	GGWCC	2 cut(s)	155, 202
BmgT120I	GGNCC	2 cut(s)	155, 202
BmiI	GGNNCC	1 cut(s)	156
BmsI	GCATC	1 cut(s)	13
BplI	GAGNNNNNCTC	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	92
BsaWI	WCCGGW	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
BseAI	TCCGGA	1 cut(s)	222
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	92
Bso31I	GGTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp13I	TCCGGA	1 cut(s)	222
Bsp1407I	TGTACA	1 cut(s)	137
Bsp143I	GATC	1 cut(s)	31
BspCNI	CTCAG	1 cut(s)	35
BspEI	TCCGGA	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	92
BsrGI	TGTACA	1 cut(s)	137
BssMI	GATC	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	86, 142
Bst6I	CTCTTC	1 cut(s)	246
BstAPI	GCANNNNNTGC	1 cut(s)	121
BstAUI	TGTACA	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	140
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	140
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	155, 202
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	3 cut(s)	78, 118, 208
CviKI_1	RGCY	3 cut(s)	78, 118, 208
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	2 cut(s)	155, 202
EcoO109I	RGGNCCY	1 cut(s)	155
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	134
FaiI	YATR	4 cut(s)	132, 168, 200, 260
FatI	CATG	1 cut(s)	130
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	116
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	1 cut(s)	116
HapII	CCGG	1 cut(s)	223
Hin1II	CATG	1 cut(s)	134
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	2 cut(s)	25, 73
Hpy188III	TCNNGA	2 cut(s)	91, 223
Hpy8I	GTNNAC	1 cut(s)	56
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	3 cut(s)	92, 168, 262
HpyCH4III	ACNGT	2 cut(s)	86, 142
HpyCH4V	TGCA	2 cut(s)	4, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	134
Kpn2I	TCCGGA	1 cut(s)	222
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	31
LpnPI	CCDG	3 cut(s)	218, 222, 236
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	4 cut(s)	206, 263, 297, 300
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	3 cut(s)	26, 36, 60
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	4 cut(s)	43, 205, 242, 247
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	222
MseI	TTAA	1 cut(s)	111
MspI	CCGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	1 cut(s)	156
NsiI	ATGCAT	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	117
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PpuMI	RGGWCCY	1 cut(s)	155
PsiI	TTATAA	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	155, 202
PspPPI	RGGWCCY	1 cut(s)	155
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	2 cut(s)	155, 202
SchI	GAGTC	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	3 cut(s)	80, 120, 234
SfaNI	GCATC	1 cut(s)	13
SinI	GGWCC	2 cut(s)	155, 202
Sse9I	AATT	3 cut(s)	26, 36, 60
SspMI	CTAG	1 cut(s)	237
TaaI	ACNGT	2 cut(s)	86, 142
TasI	AATT	3 cut(s)	26, 36, 60
TatI	WGTACW	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	2 cut(s)	155, 202
XapI	RAATTY	2 cut(s)	26, 36
XspI	CTAG	1 cut(s)	237
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.