Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0020452

Physical Location & Seq

Genomic Coordinates Forward (+)

71868893 .. 71869585

Gene Structure 693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG498600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTCTGCTCTTGCAAAGAAAACTGTAATTCTGGAGACTCATCAAGTTGAATTTCTCTCACAAGTTGACAAGATTTTGGTTAGTTATTATAAGCTCATATTCAAATTTTATTTCCCCTCCAACATATTGTGTTTGATACAAAAGGAACACAGTTTTTTTCCTCACTATTTCCTTTTCCAAGTAATTGAGGATGGACAAATTACTCAATCCGGAAGCTACAAGAGTCTCTTGACAGCAGGAACTGCATTTGCGAAGCTTGTGAATGCTCACAAAGATGCAGTAACAACATTGGGTCCTTCAAACTATCAAGTTCAAGAAGATTCTGAAAAGGAAGATATGATCCAGCCAGAGGAGTCTTATGGGAGTAACCGTAGTGTACCTGGGGTGCAGCTAACAGAAGAAGAAGAGAAGGTGATTGGTGATGTGGGGTTGAAGCCCTTTTGGGATTACATTTTTGTTTCTAAGGCAACACTTCTTCTTTGCTTAGGCACAATAGCGCCGATTGGTTTTCTTGGTCTTCAGGTTGCTTCAACTTACTGGCTAGCTCTAGCCATTCAAATTCCTAAAATAACTAGCGGCATACTCATCGGAGTTTATACTGCAGTATCAACACTTGGTGTTGTCTTTGTATTTCTAAGGTCATACTTCGCAGCCCTTATGGGATTGAAGGCGTCTAGAGCATTTTTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

230

Amino Acids

25.59

Weight (kDa)

6.09

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020452)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g18270
rosa_chinensis	RchiOBHm_Chr2g0142751
rosa_samantha	Rh2BG437300 Rh2BG489800 Rh2DG447000 Rh2DG498600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AccIII	TCCGGA	1 cut(s)	209
AciI	CCGC	1 cut(s)	576
AclWI	GGATC	1 cut(s)	334
AcsI	RAATTY	3 cut(s)	50, 104, 558
AcuI	CTGAAG	1 cut(s)	503
AcyI	GRCGYC	1 cut(s)	671
AdeI	CACNNNGTG	1 cut(s)	617
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgsI	TTSAA	8 cut(s)	50, 103, 300, 314, 433, 531, 557, 667
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	5 cut(s)	94, 216, 256, 391, 545
AluI	AGCT	5 cut(s)	94, 216, 256, 391, 545
Alw26I	GTCTC	2 cut(s)	29, 230
AlwI	GGATC	1 cut(s)	334
AlwNI	CAGNNNCTG	1 cut(s)	242
Aor13HI	TCCGGA	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	388, 650
ApoI	RAATTY	3 cut(s)	50, 104, 558
AspLEI	GCGC	1 cut(s)	499
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	2 cut(s)	424, 431
AsuNHI	GCTAGC	1 cut(s)	541
AvaII	GGWCC	1 cut(s)	293
BaeI	ACNNNNGTAYC	2 cut(s)	588, 621
BbsI	GAAGAC	1 cut(s)	509
BbvI	GCAGC	2 cut(s)	400, 662
BccI	CCATC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	568, 602
BciT130I	CCWGG	1 cut(s)	381
BcoDI	GTCTC	2 cut(s)	29, 230
BfaI	CTAG	4 cut(s)	542, 548, 573, 675
BfmI	CTRYAG	2 cut(s)	600, 689
BfoI	RGCGCY	1 cut(s)	500
BisI	GCNGC	3 cut(s)	389, 577, 651
BlsI	GCNGC	3 cut(s)	390, 578, 652
Bme1390I	CCNGG	1 cut(s)	381
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	381
BmsI	GCATC	1 cut(s)	265
BmtI	GCTAGC	1 cut(s)	545
BpiI	GAAGAC	1 cut(s)	509
BpmI	CTGGAG	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	484
BsaHI	GRCGYC	1 cut(s)	671
BsaJI	CCNNGG	1 cut(s)	380
BsaWI	WCCGGW	1 cut(s)	209
BsaXI	ACNNNNNCTCC	2 cut(s)	355, 385
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	542
BseAI	TCCGGA	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseNI	ACTGG	1 cut(s)	542
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	2 cut(s)	400, 662
BsgI	GTGCAG	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	2 cut(s)	29, 230
BsmI	GAATGC	1 cut(s)	268
Bsp13I	TCCGGA	1 cut(s)	209
Bsp143I	GATC	1 cut(s)	339
BspACI	CCGC	1 cut(s)	576
BspEI	TCCGGA	1 cut(s)	209
BspLI	GGNNCC	1 cut(s)	294
BspMAI	CTGCAG	1 cut(s)	604
BspOI	GCTAGC	1 cut(s)	545
BspPI	GGATC	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	542
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	1 cut(s)	339
BssNI	GRCGYC	1 cut(s)	671
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	3 cut(s)	25, 152, 371
Bst6I	CTCTTC	1 cut(s)	399
BstACI	GRCGYC	1 cut(s)	671
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	3 cut(s)	462, 484, 635
BstF5I	GGATG	1 cut(s)	196
BstH2I	RGCGCY	1 cut(s)	500
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	1 cut(s)	342
BstMAI	GTCTC	2 cut(s)	29, 230
BstMBI	GATC	1 cut(s)	339
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 677
BstNI	CCWGG	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	379
BstSFI	CTRYAG	2 cut(s)	600, 689
BstV1I	GCAGC	2 cut(s)	400, 662
BstV2I	GAAGAC	1 cut(s)	509
BtsCI	GGATG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	543
CaiI	CAGNNNCTG	1 cut(s)	242
CfoI	GCGC	1 cut(s)	499
Cfr13I	GGNCC	1 cut(s)	293
CseI	GACGC	1 cut(s)	660
Csp6I	GTAC	1 cut(s)	377
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	3 cut(s)	462, 484, 635
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
DraIII	CACNNNGTG	1 cut(s)	617
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco47I	GGWCC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	503
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	379
FaiI	YATR	9 cut(s)	90, 98, 125, 338, 360, 581, 597, 643, 659
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
Fnu4HI	GCNGC	3 cut(s)	389, 577, 651
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	3 cut(s)	389, 577, 651
FspBI	CTAG	4 cut(s)	542, 548, 573, 675
GlaI	GCGC	1 cut(s)	498
GluI	GCNGC	3 cut(s)	389, 577, 651
GsuI	CTGGAG	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	500
HapII	CCGG	1 cut(s)	210
HgaI	GACGC	1 cut(s)	660
HhaI	GCGC	1 cut(s)	499
Hin1I	GRCGYC	1 cut(s)	671
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	4 cut(s)	37, 223, 320, 353
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	2 cut(s)	424, 431
Hpy166II	GTNNAC	2 cut(s)	67, 377
Hpy188I	TCNGA	2 cut(s)	325, 590
Hpy188III	TCNNGA	5 cut(s)	32, 210, 229, 314, 675
Hpy8I	GTNNAC	2 cut(s)	67, 377
HpyAV	CCTTC	3 cut(s)	306, 403, 661
HpyCH4III	ACNGT	3 cut(s)	25, 152, 371
HpyCH4V	TGCA	5 cut(s)	14, 245, 278, 388, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 677
HpyF3I	CTNAG	3 cut(s)	462, 484, 635
Hsp92I	GRCGYC	1 cut(s)	671
HspAI	GCGC	1 cut(s)	497
Kpn2I	TCCGGA	1 cut(s)	209
Kzo9I	GATC	1 cut(s)	339
LpnPI	CCDG	9 cut(s)	17, 222, 223, 356, 360, 366, 393, 506, 523
Lsp1109I	GCAGC	2 cut(s)	400, 662
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	4 cut(s)	542, 548, 573, 675
MaeIII	GTNAC	2 cut(s)	280, 365
MalI	GATC	1 cut(s)	341
MboI	GATC	1 cut(s)	339
MboII	GAAGA	7 cut(s)	329, 344, 410, 413, 416, 467, 509
MluCI	AATT	6 cut(s)	27, 50, 104, 183, 198, 558
MlyI	GAGTC	3 cut(s)	31, 232, 362
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	4 cut(s)	127, 171, 181, 343
MroI	TCCGGA	1 cut(s)	209
MslI	CAYNNNNRTG	1 cut(s)	273
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	2 cut(s)	242, 677
NdeII	GATC	1 cut(s)	339
NheI	GCTAGC	1 cut(s)	541
NlaIV	GGNNCC	1 cut(s)	294
PctI	GAATGC	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	3 cut(s)	390, 578, 652
PleI	GAGTC	3 cut(s)	31, 231, 361
PpsI	GAGTC	3 cut(s)	31, 231, 361
PpuMI	RGGWCCY	1 cut(s)	293
PsiI	TTATAA	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	293
PspPPI	RGGWCCY	1 cut(s)	293
PstI	CTGCAG	1 cut(s)	604
PstNI	CAGNNNCTG	1 cut(s)	242
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	273
SatI	GCNGC	3 cut(s)	389, 577, 651
Sau3AI	GATC	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	3 cut(s)	31, 232, 362
ScrFI	CCNGG	1 cut(s)	381
SetI	ASST	9 cut(s)	96, 218, 258, 382, 393, 414, 525, 547, 641
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	2 cut(s)	600, 689
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	6 cut(s)	27, 50, 104, 183, 198, 558
SsiI	CCGC	1 cut(s)	576
SspMI	CTAG	4 cut(s)	542, 548, 573, 675
StyD4I	CCNGG	1 cut(s)	379
TaaI	ACNGT	3 cut(s)	25, 152, 371
TasI	AATT	6 cut(s)	27, 50, 104, 183, 198, 558
TauI	GCSGC	1 cut(s)	579
TfiI	GAWTC	1 cut(s)	320
TseI	GCWGC	2 cut(s)	388, 650
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	3 cut(s)	50, 104, 558
XbaI	TCTAGA	1 cut(s)	674
XspI	CTAG	4 cut(s)	542, 548, 573, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.