Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0020452

Physical Location & Seq

Genomic Coordinates Reverse (-)

64875811 .. 64888198

Gene Structure 12388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG447000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGTTTCTATCTGTTGCGCTCTTACTGGCACTGCATATTTTGCTGCTGGTTTGTGGGATCTAATAGCCAAAAATGAGGAGTCTGATCATTTTGTGATGGAGGGTGGACAAATTACTCAATCCGAAAGCTACGACGGTCTCTTGACAGAAGGAACAGCATTTAAGCAGCTTGTGCGTGCTCATGGATGTACAGTAACCACATTGGGTCCTTCAAGTTATAAAAGCGAAATAGCAAATAAAAATGAAGATATGGTCCAGCCAGAGGAGTCTTTCCGGACTAACCTCCCTAGAGATAGCAGTGAAGAGGACATATTTTTGAAGGGTGCAACTTACAGAAGAAGAAAAGAAAGAGATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

119

Amino Acids

13.35

Weight (kDa)

4.89

Isoelectric Point (pI)

57.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020452)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g18270
rosa_chinensis	RchiOBHm_Chr2g0142751
rosa_samantha	Rh2BG437300 Rh2BG489800 Rh2DG447000 Rh2DG498600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	219
AccIII	TCCGGA	1 cut(s)	273
AclWI	GGATC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	213, 319
AluBI	AGCT	2 cut(s)	129, 169
AluI	AGCT	2 cut(s)	129, 169
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	66
Aor13HI	TCCGGA	1 cut(s)	273
ApeKI	GCWGC	2 cut(s)	44, 166
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	206, 253
AvaII	GGWCC	2 cut(s)	206, 253
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	31, 178
BccI	CCATC	1 cut(s)	91
BclI	TGATCA	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	288
BisI	GCNGC	2 cut(s)	45, 167
BlsI	GCNGC	2 cut(s)	46, 168
Bme18I	GGWCC	2 cut(s)	206, 253
BmgT120I	GGNCC	2 cut(s)	206, 253
BmiI	GGNNCC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	143
BsaWI	WCCGGW	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	31
BseAI	TCCGGA	1 cut(s)	273
BseGI	GGATG	1 cut(s)	191
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	2 cut(s)	92, 278
BseXI	GCAGC	2 cut(s)	31, 178
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	143
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp13I	TCCGGA	1 cut(s)	273
Bsp1407I	TGTACA	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	58, 85
BspEI	TCCGGA	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	1 cut(s)	66
BspTNI	GGTCTC	1 cut(s)	143
BsrGI	TGTACA	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	31
BssMI	GATC	2 cut(s)	58, 85
Bst4CI	ACNGT	2 cut(s)	137, 193
Bst6I	CTCTTC	1 cut(s)	297
BstAPI	GCANNNNNTGC	2 cut(s)	41, 172
BstAUI	TGTACA	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	2 cut(s)	61, 88
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	58, 85
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 172
BstV1I	GCAGC	2 cut(s)	31, 178
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	191
BtsI	GCAGTG	2 cut(s)	30, 304
BtsIMutI	CAGTG	2 cut(s)	30, 304
Cac8I	GCNNGC	1 cut(s)	177
CfoI	GCGC	1 cut(s)	20
Cfr13I	GGNCC	2 cut(s)	206, 253
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	4 cut(s)	68, 129, 169, 259
CviKI_1	RGCY	4 cut(s)	68, 129, 169, 259
CviQI	GTAC	1 cut(s)	189
DpnI	GATC	2 cut(s)	60, 87
DpnII	GATC	2 cut(s)	58, 85
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	206, 253
EcoO109I	RGGNCCY	1 cut(s)	206
FaeI	CATG	1 cut(s)	185
FaiI	YATR	5 cut(s)	37, 183, 219, 251, 311
FatI	CATG	1 cut(s)	181
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	45, 167
FokI	GGATG	1 cut(s)	198
Fsp4HI	GCNGC	2 cut(s)	45, 167
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	2 cut(s)	45, 167
HapII	CCGG	1 cut(s)	274
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	1 cut(s)	185
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HinfI	GANTC	2 cut(s)	80, 266
HpaII	CCGG	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	107
Hpy188I	TCNGA	2 cut(s)	85, 124
Hpy188III	TCNNGA	2 cut(s)	142, 274
Hpy8I	GTNNAC	1 cut(s)	107
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	3 cut(s)	143, 219, 313
HpyCH4III	ACNGT	2 cut(s)	137, 193
HpyCH4V	TGCA	2 cut(s)	35, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 172
Hsp92II	CATG	1 cut(s)	185
HspAI	GCGC	1 cut(s)	18
Kpn2I	TCCGGA	1 cut(s)	273
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	58, 85
LpnPI	CCDG	5 cut(s)	12, 33, 269, 273, 287
Lsp1109I	GCAGC	2 cut(s)	31, 178
MaeI	CTAG	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	2 cut(s)	60, 87
MboI	GATC	2 cut(s)	58, 85
MboII	GAAGA	4 cut(s)	257, 314, 348, 351
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	1 cut(s)	111
MlyI	GAGTC	2 cut(s)	89, 275
MnlI	CCTC	5 cut(s)	70, 94, 256, 293, 298
MroI	TCCGGA	1 cut(s)	273
MseI	TTAA	1 cut(s)	162
MspI	CCGG	1 cut(s)	274
MwoI	GCNNNNNNNGC	2 cut(s)	41, 172
NdeII	GATC	2 cut(s)	58, 85
NlaIII	CATG	1 cut(s)	185
NlaIV	GGNNCC	1 cut(s)	207
PkrI	GCNGC	2 cut(s)	46, 168
PleI	GAGTC	2 cut(s)	88, 274
PpsI	GAGTC	2 cut(s)	88, 274
PpuMI	RGGWCCY	1 cut(s)	206
PsiI	TTATAA	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	2 cut(s)	206, 253
PspPPI	RGGWCCY	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	2 cut(s)	45, 167
Sau3AI	GATC	2 cut(s)	58, 85
Sau96I	GGNCC	2 cut(s)	206, 253
SchI	GAGTC	2 cut(s)	89, 275
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	3 cut(s)	131, 171, 285
SinI	GGWCC	2 cut(s)	206, 253
Sse9I	AATT	1 cut(s)	111
SspMI	CTAG	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	137, 193
TasI	AATT	1 cut(s)	111
TatI	WGTACW	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	2 cut(s)	37, 304
TseI	GCWGC	2 cut(s)	44, 166
TspDTI	ATGAA	1 cut(s)	258
TspRI	CASTG	2 cut(s)	37, 304
VpaK11BI	GGWCC	2 cut(s)	206, 253
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.