Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020452

Physical Location & Seq

Genomic Coordinates Reverse (-)

60373526 .. 60373832

Gene Structure 307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51288

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGTTTCTATCTGTTGCGCTCTTACTGGCACTGCATATTTTGCTGCTGGTTTGTGGGATCTAATAGCCAAAAATGAGGAGTCTGATCATTTTGTTCTTTGCTGCTTGCTGAAAGGTCCAAATGGATCAAAGTTCGAAACCCTGTTTGACACGTCTTCTTTTTTCTTGGTATCAGCTATAAACATTGAAGTCCTTGTACGAACCCATAGCATTCAGGTTTTAGATGTACTGACATGGACAGTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

82

Amino Acids

9.05

Weight (kDa)

4.73

Isoelectric Point (pI)

22.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020452)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g18270
rosa_chinensis	RchiOBHm_Chr2g0142751
rosa_samantha	Rh2BG437300 Rh2BG489800 Rh2DG447000 Rh2DG498600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	66, 133
AfaI	GTAC	2 cut(s)	198, 228
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	188
AjiI	CACGTC	1 cut(s)	153
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
AlwI	GGATC	2 cut(s)	66, 133
ApeKI	GCWGC	2 cut(s)	44, 102
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	116
AsuII	TTCGAA	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	116
BarI	GAAGNNNNNNTAC	2 cut(s)	180, 212
BbsI	GAAGAC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	31, 89
BclI	TGATCA	1 cut(s)	85
BisI	GCNGC	2 cut(s)	45, 103
BlsI	GCNGC	2 cut(s)	46, 104
Bme18I	GGWCC	1 cut(s)	116
BmgBI	CACGTC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	147
Bpu14I	TTCGAA	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	31
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	31, 89
BsmI	GAATGC	1 cut(s)	210
Bsp119I	TTCGAA	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	58, 85, 125
BspPI	GGATC	2 cut(s)	66, 133
BspT104I	TTCGAA	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	31
BssMI	GATC	3 cut(s)	58, 85, 125
Bst4CI	ACNGT	1 cut(s)	241
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstBI	TTCGAA	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	3 cut(s)	61, 88, 128
BstMBI	GATC	3 cut(s)	58, 85, 125
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	31, 89
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BtrI	CACGTC	1 cut(s)	153
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	30, 246
Cac8I	GCNNGC	1 cut(s)	107
CfoI	GCGC	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	197, 227
CviAII	CATG	1 cut(s)	234
CviJI	RGCY	2 cut(s)	68, 176
CviKI_1	RGCY	2 cut(s)	68, 176
CviQI	GTAC	2 cut(s)	197, 227
DpnI	GATC	3 cut(s)	60, 87, 127
DpnII	GATC	3 cut(s)	58, 85, 125
Eco47I	GGWCC	1 cut(s)	116
FaeI	CATG	1 cut(s)	237
FaiI	YATR	4 cut(s)	37, 179, 207, 235
FatI	CATG	1 cut(s)	233
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	45, 103
Fsp4HI	GCNGC	2 cut(s)	45, 103
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	2 cut(s)	45, 103
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	1 cut(s)	237
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	80
Hpy188I	TCNGA	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	1 cut(s)	237
HspAI	GCGC	1 cut(s)	18
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	58, 85, 125
LpnPI	CCDG	4 cut(s)	12, 33, 155, 200
Lsp1109I	GCAGC	2 cut(s)	31, 89
MaeII	ACGT	1 cut(s)	152
MalI	GATC	3 cut(s)	60, 87, 127
MboI	GATC	3 cut(s)	58, 85, 125
MboII	GAAGA	1 cut(s)	147
MflI	RGATCY	1 cut(s)	58
MlyI	GAGTC	1 cut(s)	89
MnlI	CCTC	1 cut(s)	70
Mva1269I	GAATGC	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeII	GATC	3 cut(s)	58, 85, 125
NlaIII	CATG	1 cut(s)	237
NspV	TTCGAA	1 cut(s)	135
PctI	GAATGC	1 cut(s)	210
PkrI	GCNGC	2 cut(s)	46, 104
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	2 cut(s)	198, 228
RsaNI	GTAC	2 cut(s)	197, 227
SatI	GCNGC	2 cut(s)	45, 103
Sau3AI	GATC	3 cut(s)	58, 85, 125
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	1 cut(s)	89
SetI	ASST	4 cut(s)	118, 155, 178, 219
SfuI	TTCGAA	1 cut(s)	135
SgeI	CNNG	8 cut(s)	39, 60, 118, 154, 163, 178, 206, 227
SinI	GGWCC	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	1 cut(s)	135
TatI	WGTACW	1 cut(s)	226
TscAI	CASTG	2 cut(s)	37, 246
TseI	GCWGC	2 cut(s)	44, 102
TspRI	CASTG	2 cut(s)	37, 246
VpaK11BI	GGWCC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.