pycom17g19070

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013388
Physical Location & Seq
Forward (+)
16658348 .. 16660738
2391 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 843 bp
ATGCTGAGAAGACGACTCCCATCCCTTCTCTCCACCACCATTTTCACCTCCTCAATTCGCACCAAGCCCCCTCTCACTCTCCCCACACACTCACCCATCCCATCTCAATCCCTACATTTCCTCCCATGCCTAAACCCTAACCCTAGCTTTAGCAATGACAAAGGGTTTGGATTTCAGGGAGTGAGAGCCTACAGTCTGCTGAGCTTGAACGATCTGAGAGGCAAGGTGCCCAGGAAGCAGAAGACGAGGAAAGGCCGTGGGATTGGCTCTGGTAAAGGCAAGACTGCCGGTCGAGGCCACAAGGGTCAGAAGGCTCGAGGCTCTGGGAAGCTGGGCTTCGAAGGTGGTCAGACGCCGCTGCGCCGTCGTTTGCCCAAGCGTGGCTTTAACAACCCATTTAGTCTCACTTTTCAGCCTGTAGGATTAGGAAAAATTGCTACACTTATAAATGCAGGAAAGATTGATTCGTCTGAGTTGATTACAATGAAAACGCTCAAGGATACAGGGGCAATAGGGAAGCAGATTAAAGATGGAGTGCGATTGATGGGACGTGGTGCTGAACAGATCCAATGGCCAATTCATCTAGAGGTATCACGTGTCACCGTAAGGGCAAGGGAAGCTGTTGAAGCTGCAGGTGGGTCTGTTAGAAGAGTGTATTACAACAAGTTGGGCTTTCGAGCATTGCTTAAACCTGAGTGGTTTGAAAAGAAAGGCAGGTTATTGCCGAAAGCAGCTAGACCCCCCCCAAAACAGAAGGATAAAGTTGATAGCATTGGCCGCTTGCCAGCCCCAACGAAACCAATTCCTTTTTTGACAGAAGACAAAGAAGTGGCCTCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L27A

Protein Analysis

281

Amino Acids

30.71

Weight (kDa)

11.31

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L27A PF00828 139 - 215 3.8e-17 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64670
fragaria_vesca FvH4_3g30590
malus_domestica MD17G1181300.v1.1
prunus_persica Prupe.6G163200_v2.0.a1 Prupe.8G100400_v2.0.a1
pyrus_communis pycom17g19070
rosa_chinensis RchiOBHm_Chr5g0056641
rosa_laevigata RLG00000035114
rosa_multiflora Rmu_sc0004101.1_g000037 Rmu_sc0008982.1_g000001
rosa_roxburghii Rroxscaffold_1G00023720
rosa_rugosa Rorug05G0301100
rosa_samantha Rh5AG371400 Rh5BG383100 Rh5CG406300 Rh5DG395900
rosa_wichuraiana Rw0G018930 Rw5G034810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 446
AarI CACCTGC 1 cut(s) 623
Acc36I ACCTGC 2 cut(s) 623, 705
AccB1I GGYRCC 1 cut(s) 226
AciI CCGC 2 cut(s) 356, 778
AclWI GGATC 1 cut(s) 559
AcoI YGGCCR 2 cut(s) 572, 775
AcvI CACGTG 1 cut(s) 596
AcyI GRCGYC 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 380
AflIII ACRYGT 1 cut(s) 595
AgsI TTSAA 3 cut(s) 208, 626, 704
AhdI GACNNNNNGTC 1 cut(s) 288
AjiI CACGTC 1 cut(s) 551
AjnI CCWGG 1 cut(s) 230
AjuI GAANNNNNNNTTGG 2 cut(s) 561, 593
AluBI AGCT 6 cut(s) 147, 204, 331, 620, 629, 734
AluI AGCT 6 cut(s) 147, 204, 331, 620, 629, 734
Alw26I GTCTC 1 cut(s) 407
AlwI GGATC 1 cut(s) 559
Ama87I CYCGRG 1 cut(s) 315
AoxI GGCC 5 cut(s) 253, 295, 572, 775, 831
ApeKI GCWGC 3 cut(s) 358, 629, 731
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AspLEI GCGC 1 cut(s) 363
AsuHPI GGTGA 3 cut(s) 37, 84, 592
AsuII TTCGAA 1 cut(s) 339
AvaI CYCGRG 1 cut(s) 315
BaeGI GKGCMC 1 cut(s) 231
BalI TGGCCA 1 cut(s) 574
BanI GGYRCC 1 cut(s) 226
BbrPI CACGTG 1 cut(s) 596
BbsI GAAGAC 3 cut(s) 16, 248, 825
BbvI GCAGC 3 cut(s) 345, 616, 743
BccI CCATC 5 cut(s) 28, 104, 109, 524, 538
BceAI ACGGC 2 cut(s) 240, 348
BciT130I CCWGG 1 cut(s) 232
BciVI GTATCC 1 cut(s) 493
BcoDI GTCTC 1 cut(s) 407
BfaI CTAG 3 cut(s) 144, 584, 735
BfmI CTRYAG 3 cut(s) 190, 417, 630
BfuAI ACCTGC 2 cut(s) 623, 705
BfuI GTATCC 1 cut(s) 493
BisI GCNGC 5 cut(s) 356, 359, 630, 732, 778
BlpI GCTNAGC 1 cut(s) 200
BlsI GCNGC 5 cut(s) 357, 360, 631, 733, 779
Bme1390I CCNGG 1 cut(s) 232
BmeRI GACNNNNNGTC 1 cut(s) 288
BmeT110I CYCGRG 1 cut(s) 315
BmgBI CACGTC 1 cut(s) 551
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 232
BpiI GAAGAC 3 cut(s) 16, 248, 825
Bpu1102I GCTNAGC 1 cut(s) 200
Bpu14I TTCGAA 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 479
BsaAI YACGTR 1 cut(s) 596
BsaHI GRCGYC 1 cut(s) 353
BsaJI CCNNGG 2 cut(s) 230, 256
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse118I RCCGGY 1 cut(s) 287
Bse3DI GCAATG 2 cut(s) 160, 680
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 230, 256
BseGI GGATG 2 cut(s) 20, 96
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMI GCAATG 2 cut(s) 160, 680
BseMII CTCAG 4 cut(s) 191, 206, 462, 684
BseRI GAGGAG 1 cut(s) 40
BseSI GKGCMC 1 cut(s) 231
BseXI GCAGC 3 cut(s) 345, 616, 743
BseYI CCCAGC 1 cut(s) 331
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 5 cut(s) 255, 297, 574, 777, 833
BshNI GGYRCC 1 cut(s) 226
BsiEI CGRYCG 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 315
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 1 cut(s) 561
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 1 cut(s) 407
BsmFI GGGAC 1 cut(s) 561
BsnI GGCC 5 cut(s) 255, 297, 574, 777, 833
BsoBI CYCGRG 1 cut(s) 315
Bsp119I TTCGAA 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 2 cut(s) 211, 564
Bsp1720I GCTNAGC 1 cut(s) 200
BspACI CCGC 2 cut(s) 356, 778
BspANI GGCC 5 cut(s) 255, 297, 574, 777, 833
BspCNI CTCAG 4 cut(s) 192, 207, 463, 685
BspLI GGNNCC 1 cut(s) 228
BspMAI CTGCAG 1 cut(s) 634
BspMI ACCTGC 2 cut(s) 623, 705
BspPI GGATC 1 cut(s) 559
BspT104I TTCGAA 1 cut(s) 339
BspT107I GGYRCC 1 cut(s) 226
BsrDI GCAATG 2 cut(s) 160, 680
BsrFI RCCGGY 1 cut(s) 287
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 230, 256
BssMI GATC 2 cut(s) 211, 564
BssNI GRCGYC 1 cut(s) 353
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 2 cut(s) 194, 604
Bst6I CTCTTC 1 cut(s) 643
BstACI GRCGYC 1 cut(s) 353
BstBAI YACGTR 1 cut(s) 596
BstBI TTCGAA 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 782, 786
BstDEI CTNAG 5 cut(s) 5, 200, 215, 471, 693
BstDSI CCRYGG 1 cut(s) 256
BstF5I GGATG 2 cut(s) 20, 96
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 2 cut(s) 214, 567
BstMAI GTCTC 1 cut(s) 407
BstMBI GATC 2 cut(s) 211, 564
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 4 cut(s) 235, 617, 626, 777
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 230
BstSFI CTRYAG 3 cut(s) 190, 417, 630
BstSLI GKGCMC 1 cut(s) 231
BstV1I GCAGC 3 cut(s) 345, 616, 743
BstV2I GAAGAC 3 cut(s) 16, 248, 825
BstX2I RGATCY 1 cut(s) 564
BstYI RGATCY 1 cut(s) 564
BsuI GTATCC 1 cut(s) 493
BsuRI GGCC 5 cut(s) 255, 297, 574, 777, 833
BtgI CCRYGG 1 cut(s) 256
BtrI CACGTC 1 cut(s) 551
BtsCI GGATG 2 cut(s) 20, 96
BveI ACCTGC 2 cut(s) 623, 705
Cac8I GCNNGC 2 cut(s) 782, 786
CfoI GCGC 1 cut(s) 363
Cfr10I RCCGGY 1 cut(s) 287
CseI GACGC 1 cut(s) 361
CviAII CATG 1 cut(s) 126
DdeI CTNAG 5 cut(s) 5, 200, 215, 471, 693
DpnI GATC 2 cut(s) 213, 566
DpnII GATC 2 cut(s) 211, 564
DriI GACNNNNNGTC 1 cut(s) 288
EaeI YGGCCR 2 cut(s) 572, 775
Eam1104I CTCTTC 1 cut(s) 643
Eam1105I GACNNNNNGTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 643
Eco72I CACGTG 1 cut(s) 596
Eco88I CYCGRG 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 230
FaeI CATG 1 cut(s) 129
FaiI YATR 2 cut(s) 127, 446
FalI AAGNNNNNCTT 6 cut(s) 320, 352, 368, 400, 656, 688
FaqI GGGAC 1 cut(s) 561
FatI CATG 1 cut(s) 125
Fnu4HI GCNGC 5 cut(s) 356, 359, 630, 732, 778
FokI GGATG 2 cut(s) 7, 83
Fsp4HI GCNGC 5 cut(s) 356, 359, 630, 732, 778
FspBI CTAG 3 cut(s) 144, 584, 735
GlaI GCGC 1 cut(s) 362
GluI GCNGC 5 cut(s) 356, 359, 630, 732, 778
GsaI CCCAGC 1 cut(s) 335
HaeIII GGCC 5 cut(s) 255, 297, 574, 777, 833
HapII CCGG 1 cut(s) 288
HgaI GACGC 1 cut(s) 361
HhaI GCGC 1 cut(s) 363
Hin1I GRCGYC 1 cut(s) 353
Hin1II CATG 1 cut(s) 129
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HinfI GANTC 2 cut(s) 15, 464
HpaII CCGG 1 cut(s) 288
HphI GGTGA 3 cut(s) 37, 84, 592
Hpy188I TCNGA 4 cut(s) 216, 309, 351, 472
Hpy188III TCNNGA 1 cut(s) 584
Hpy99I CGWCG 1 cut(s) 369
HpyAV CCTTC 4 cut(s) 35, 304, 335, 748
HpyCH4III ACNGT 2 cut(s) 194, 604
HpyCH4IV ACGT 2 cut(s) 550, 595
HpyCH4V TGCA 2 cut(s) 452, 632
HpyF10VI GCNNNNNNNGC 4 cut(s) 235, 617, 626, 777
HpyF3I CTNAG 5 cut(s) 5, 200, 215, 471, 693
HpySE526I ACGT 2 cut(s) 550, 595
Hsp92I GRCGYC 1 cut(s) 353
Hsp92II CATG 1 cut(s) 129
HspAI GCGC 1 cut(s) 361
Kzo9I GATC 2 cut(s) 211, 564
Lsp1109I GCAGC 3 cut(s) 345, 616, 743
MaeI CTAG 3 cut(s) 144, 584, 735
MaeII ACGT 2 cut(s) 550, 595
MaeIII GTNAC 1 cut(s) 598
MalI GATC 2 cut(s) 213, 566
MboI GATC 2 cut(s) 211, 564
MboII GAAGA 4 cut(s) 21, 253, 660, 830
MflI RGATCY 1 cut(s) 564
MhlI GDGCHC 1 cut(s) 231
MlsI TGGCCA 1 cut(s) 574
MluCI AATT 4 cut(s) 54, 432, 576, 801
MluNI TGGCCA 1 cut(s) 574
MlyI GAGTC 1 cut(s) 9
MnlI CCTC 9 cut(s) 58, 61, 81, 131, 212, 240, 287, 311, 580
Mox20I TGGCCA 1 cut(s) 574
MscI TGGCCA 1 cut(s) 574
MseI TTAA 3 cut(s) 387, 525, 687
Msp20I TGGCCA 1 cut(s) 574
MspA1I CMGCKG 1 cut(s) 358
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 232
MvaI CCWGG 1 cut(s) 232
MwoI GCNNNNNNNGC 4 cut(s) 235, 617, 626, 777
NdeII GATC 2 cut(s) 211, 564
NlaIII CATG 1 cut(s) 129
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 598
NspV TTCGAA 1 cut(s) 339
PaeR7I CTCGAG 1 cut(s) 315
PaqCI CACCTGC 1 cut(s) 623
PfeI GAWTC 1 cut(s) 464
PkrI GCNGC 5 cut(s) 357, 360, 631, 733, 779
PleI GAGTC 1 cut(s) 9
PmaCI CACGTG 1 cut(s) 596
PmlI CACGTG 1 cut(s) 596
PpsI GAGTC 1 cut(s) 9
Ppu21I YACGTR 1 cut(s) 596
PsiI TTATAA 1 cut(s) 446
Psp6I CCWGG 1 cut(s) 230
PspCI CACGTG 1 cut(s) 596
PspFI CCCAGC 1 cut(s) 331
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 228
PspXI VCTCGAGB 1 cut(s) 315
PstI CTGCAG 1 cut(s) 634
PsuI RGATCY 1 cut(s) 564
SaqAI TTAA 3 cut(s) 387, 525, 687
SatI GCNGC 5 cut(s) 356, 359, 630, 732, 778
Sau3AI GATC 2 cut(s) 211, 564
SchI GAGTC 1 cut(s) 9
ScrFI CCNGG 1 cut(s) 232
SduI GDGCHC 1 cut(s) 231
SfcI CTRYAG 3 cut(s) 190, 417, 630
Sfr274I CTCGAG 1 cut(s) 315
SfuI TTCGAA 1 cut(s) 339
SlaI CTCGAG 1 cut(s) 315
SmlI CTYRAG 2 cut(s) 315, 494
SmoI CTYRAG 2 cut(s) 315, 494
Sse9I AATT 4 cut(s) 54, 432, 576, 801
SsiI CCGC 2 cut(s) 356, 778
SspMI CTAG 3 cut(s) 144, 584, 735
StyD4I CCNGG 1 cut(s) 230
TaaI ACNGT 2 cut(s) 194, 604
TaiI ACGT 2 cut(s) 553, 598
TaqI TCGA 4 cut(s) 292, 316, 339, 676
TasI AATT 4 cut(s) 54, 432, 576, 801
TauI GCSGC 2 cut(s) 358, 780
TfiI GAWTC 1 cut(s) 464
Tru1I TTAA 3 cut(s) 387, 525, 687
Tru9I TTAA 3 cut(s) 387, 525, 687
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 3 cut(s) 358, 629, 731
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 2 cut(s) 500, 569
XbaI TCTAGA 1 cut(s) 583
XhoI CTCGAG 1 cut(s) 315
XspI CTAG 3 cut(s) 144, 584, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.