Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0017337

Physical Location & Seq

Genomic Coordinates Forward (+)

19685522 .. 19687040

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCTCAATGCTCCTGCAGTTAAGGATCCTGGTGTGTCTGTTAACCATGTGATTCGGAGCCCTGATGGTGCTTTATTTGGTATTGCTTACTCGAGGCACATTGTTCAAATATATTCTTATCATTGGGGTGATGACGTACGAGAGCACCTAGAGATTGATGCACATGTTGGTGGAGTAAATGATCTGGCATTCTCCCATCCCAATGAGCAGCTTTGTGAGATTACCTGTGTTGTGTGGGATGCTACAACCGGTGCAAAACAATATACTTTTGAAGGTCATGAGGCTCCAGTTTATTCTGTCTGCCCGCATTATAAGGAAAACATTCAGTTTATTTTTTCAATAGCACTGGATGGAAAGATAAAGGCTTGGGAGTATGACAATTTGGGATCTCGCGTTGATTATGATGCTCCTGGTCGCTGGTGCACAACCATGGCTTATAGTGCTGATGGTACAAGGCTATTTTCATGTGGGACAAGTAAAGACGGTGAGTCATATATTGTTGAATGGAATGAAAGTGAAGGGGCTGTGAAGAGGACCTATCAAGGCTTTCGCAAGCGTTCTTTTGGTGTTGTGCAATTCAATACTACTAAAGACCGGTTTTTGGCTGCTGGTGATGATTTTTCTATTAAATTTTGGGACATGGACAATATTCAACTTCTGACAACTGCTGATGTTGATGGAGGCCTCCCAGCAAGCCCTCGTATCCGCCTCAACAAGGATGGCACTCTCTTGGCTGCTTCTTCCAATGAGAATGGGATTAAAGTTTTGGCAAATGCAGATGGAATGCGGTGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

266

Amino Acids

29.49

Weight (kDa)

5.23

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	13 - 126	6.6e-10	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	13 - 218	4.8e-16	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	13 - 261	3.1e-17	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	28 - 127	7.1e-06	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	77 - 255	4.9e-14	WDR3 first beta-propeller domain
WDR55	PF24796	97 - 218	2.6e-06	WDR55

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017337)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29651
malus_domestica	MD00G1020200.v1.1 MD00G1021800.v1.1
pyrus_communis	pycom03g18610 pycom11g01420 pycom13g13820 pycom16g13720 pycom17g21150 pycom17g21220 pycom17g21300 pycom17g21370
rosa_chinensis	RchiOBHm_Chr5g0002691 RchiOBHm_Chr6g0261151

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	312
AccII	CGCG	1 cut(s)	393
AciI	CCGC	3 cut(s)	305, 706, 787
AclWI	GGATC	3 cut(s)	20, 33, 394
AcsI	RAATTY	1 cut(s)	629
AfaI	GTAC	2 cut(s)	138, 451
AfiI	CCNNNNNNNGG	2 cut(s)	601, 715
AflIII	ACRYGT	1 cut(s)	163
AgeI	ACCGGT	2 cut(s)	248, 594
AgsI	TTSAA	6 cut(s)	107, 272, 339, 503, 580, 653
AhdI	GACNNNNNGTC	1 cut(s)	487
AjnI	CCWGG	2 cut(s)	28, 409
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
Alw21I	GWGCWC	2 cut(s)	147, 425
Alw44I	GTGCAC	1 cut(s)	421
AlwI	GGATC	3 cut(s)	20, 33, 394
Ama87I	CYCGRG	1 cut(s)	91
AoxI	GGCC	1 cut(s)	682
ApaLI	GTGCAC	1 cut(s)	421
ApeKI	GCWGC	3 cut(s)	208, 605, 734
ApoI	RAATTY	1 cut(s)	629
AsiGI	ACCGGT	2 cut(s)	248, 594
Asp700I	GAANNNNTTC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	534
AsuHPI	GGTGA	3 cut(s)	140, 497, 623
AvaI	CYCGRG	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	534
BaeGI	GKGCMC	1 cut(s)	425
BamHI	GGATCC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	62
Bbv12I	GWGCWC	2 cut(s)	147, 425
BbvI	GCAGC	3 cut(s)	220, 592, 721
BccI	CCATC	7 cut(s)	59, 204, 344, 440, 671, 713, 773
BciT130I	CCWGG	2 cut(s)	30, 411
BciVI	GTATCC	1 cut(s)	713
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	15
BfuI	GTATCC	1 cut(s)	713
BisI	GCNGC	3 cut(s)	209, 606, 735
BlsI	GCNGC	3 cut(s)	210, 607, 736
Bme1390I	CCNGG	2 cut(s)	30, 411
Bme18I	GGWCC	1 cut(s)	534
BmeRI	GACNNNNNGTC	1 cut(s)	487
BmeT110I	CYCGRG	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	534
BmiI	GGNNCC	3 cut(s)	27, 59, 285
BmrFI	CCNGG	2 cut(s)	30, 411
BmsI	GCATC	3 cut(s)	148, 229, 394
BpmI	CTGGAG	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	429
BsaWI	WCCGGW	2 cut(s)	248, 594
Bsc4I	CCNNNNNNNGG	2 cut(s)	601, 715
Bse118I	RCCGGY	2 cut(s)	248, 594
Bse1I	ACTGG	2 cut(s)	287, 351
BseBI	CCWGG	2 cut(s)	30, 411
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	4 cut(s)	196, 244, 355, 724
BseLI	CCNNNNNNNGG	2 cut(s)	601, 715
BseNI	ACTGG	2 cut(s)	287, 351
BseSI	GKGCMC	1 cut(s)	425
BseXI	GCAGC	3 cut(s)	220, 592, 721
BseYI	CCCAGC	1 cut(s)	688
Bsh1236I	CGCG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	684
BshTI	ACCGGT	2 cut(s)	248, 594
BsiHKAI	GWGCWC	2 cut(s)	147, 425
BsiHKCI	CYCGRG	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	249, 595
BsiWI	CGTACG	1 cut(s)	136
BslFI	GGGAC	2 cut(s)	484, 650
BslI	CCNNNNNNNGG	2 cut(s)	601, 715
BsmFI	GGGAC	2 cut(s)	484, 650
BsmI	GAATGC	2 cut(s)	188, 789
BsnI	GGCC	1 cut(s)	684
BsoBI	CYCGRG	1 cut(s)	91
Bsp1286I	GDGCHC	3 cut(s)	62, 147, 425
Bsp143I	GATC	3 cut(s)	25, 181, 386
Bsp19I	CCATGG	1 cut(s)	429
BspACI	CCGC	3 cut(s)	305, 706, 787
BspANI	GGCC	1 cut(s)	684
BspFNI	CGCG	1 cut(s)	393
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	3 cut(s)	27, 59, 285
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	3 cut(s)	20, 33, 394
BsrFI	RCCGGY	2 cut(s)	248, 594
BsrI	ACTGG	2 cut(s)	287, 351
BssAI	RCCGGY	2 cut(s)	248, 594
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	3 cut(s)	25, 181, 386
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	2 cut(s)	30, 411
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	1 cut(s)	524
BstC8I	GCNNGC	3 cut(s)	305, 554, 694
BstDSI	CCRYGG	1 cut(s)	429
BstENI	CCTNNNNNAGG	1 cut(s)	713
BstF5I	GGATG	4 cut(s)	196, 244, 355, 724
BstFNI	CGCG	1 cut(s)	393
BstKTI	GATC	3 cut(s)	28, 184, 389
BstMBI	GATC	3 cut(s)	25, 181, 386
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstNI	CCWGG	2 cut(s)	30, 411
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	2 cut(s)	28, 409
BstSFI	CTRYAG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	425
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	3 cut(s)	220, 592, 721
BstX2I	RGATCY	2 cut(s)	25, 386
BstYI	RGATCY	2 cut(s)	25, 386
BsuI	GTATCC	1 cut(s)	713
BsuRI	GGCC	1 cut(s)	684
BtgI	CCRYGG	1 cut(s)	429
BtsCI	GGATG	4 cut(s)	196, 244, 355, 724
BtsIMutI	CAGTG	1 cut(s)	344
Cac8I	GCNNGC	3 cut(s)	305, 554, 694
CciI	TCATGA	1 cut(s)	277
Cfr10I	RCCGGY	2 cut(s)	248, 594
Cfr13I	GGNCC	1 cut(s)	534
Csp6I	GTAC	2 cut(s)	137, 450
CspAI	ACCGGT	2 cut(s)	248, 594
CviAII	CATG	6 cut(s)	47, 164, 278, 430, 465, 640
CviQI	GTAC	2 cut(s)	137, 450
DpnI	GATC	3 cut(s)	27, 183, 388
DpnII	GATC	3 cut(s)	25, 181, 386
DriI	GACNNNNNGTC	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	524
Eam1105I	GACNNNNNGTC	1 cut(s)	487
EarI	CTCTTC	1 cut(s)	524
EciI	GGCGGA	1 cut(s)	695
Eco130I	CCWWGG	1 cut(s)	429
Eco147I	AGGCCT	1 cut(s)	684
Eco24I	GRGCYC	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	534
Eco88I	CYCGRG	1 cut(s)	91
EcoNI	CCTNNNNNAGG	1 cut(s)	713
EcoO109I	RGGNCCY	1 cut(s)	534
EcoRII	CCWGG	2 cut(s)	28, 409
EcoT14I	CCWWGG	1 cut(s)	429
EcoT38I	GRGCYC	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	6 cut(s)	50, 167, 281, 433, 468, 643
FaqI	GGGAC	2 cut(s)	484, 650
FatI	CATG	6 cut(s)	46, 163, 277, 429, 464, 639
FauI	CCCGC	1 cut(s)	312
Fnu4HI	GCNGC	3 cut(s)	209, 606, 735
FokI	GGATG	4 cut(s)	183, 251, 362, 731
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	3 cut(s)	209, 606, 735
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	3 cut(s)	209, 606, 735
GsaI	CCCAGC	1 cut(s)	692
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	684
HapII	CCGG	2 cut(s)	249, 595
Hin1II	CATG	6 cut(s)	50, 167, 281, 433, 468, 643
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	2 cut(s)	52, 488
HpaI	GTTAAC	1 cut(s)	43
HpaII	CCGG	2 cut(s)	249, 595
HphI	GGTGA	3 cut(s)	140, 497, 623
Hpy166II	GTNNAC	2 cut(s)	43, 423
Hpy188I	TCNGA	2 cut(s)	57, 660
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	2 cut(s)	43, 423
HpyAV	CCTTC	2 cut(s)	266, 512
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	6 cut(s)	17, 161, 254, 423, 574, 776
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	6 cut(s)	50, 167, 281, 433, 468, 643
KspAI	GTTAAC	1 cut(s)	43
Kzo9I	GATC	3 cut(s)	25, 181, 386
LmnI	GCTCC	4 cut(s)	16, 57, 289, 412
Lsp1109I	GCAGC	3 cut(s)	220, 592, 721
LweI	GCATC	3 cut(s)	148, 229, 394
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	1 cut(s)	135
MalI	GATC	3 cut(s)	27, 183, 388
MboI	GATC	3 cut(s)	25, 181, 386
MboII	GAAGA	2 cut(s)	541, 732
MflI	RGATCY	2 cut(s)	25, 386
MhlI	GDGCHC	3 cut(s)	62, 147, 425
MluCI	AATT	3 cut(s)	379, 575, 629
MlyI	GAGTC	1 cut(s)	497
MnlI	CCTC	7 cut(s)	87, 274, 525, 674, 695, 708, 719
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	4 cut(s)	21, 42, 627, 759
MslI	CAYNNNNRTG	4 cut(s)	126, 168, 201, 428
MspI	CCGG	2 cut(s)	249, 595
MspR9I	CCNGG	2 cut(s)	30, 411
Mva1269I	GAATGC	2 cut(s)	188, 789
MvaI	CCWGG	2 cut(s)	30, 411
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	440
NcoI	CCATGG	1 cut(s)	429
NdeII	GATC	3 cut(s)	25, 181, 386
NlaIII	CATG	6 cut(s)	50, 167, 281, 433, 468, 643
NlaIV	GGNNCC	3 cut(s)	27, 59, 285
NspI	RCATGY	1 cut(s)	167
PaeR7I	CTCGAG	1 cut(s)	91
PagI	TCATGA	1 cut(s)	277
PceI	AGGCCT	1 cut(s)	684
PciI	ACATGT	1 cut(s)	163
PctI	GAATGC	2 cut(s)	188, 789
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	52
Pfl23II	CGTACG	1 cut(s)	136
PinAI	ACCGGT	2 cut(s)	248, 594
PkrI	GCNGC	3 cut(s)	210, 607, 736
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
PpuMI	RGGWCCY	1 cut(s)	534
PscI	ACATGT	1 cut(s)	163
PsiI	TTATAA	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	534
Psp6I	CCWGG	2 cut(s)	28, 409
PspFI	CCCAGC	1 cut(s)	688
PspGI	CCWGG	2 cut(s)	28, 409
PspLI	CGTACG	1 cut(s)	136
PspN4I	GGNNCC	3 cut(s)	27, 59, 285
PspPI	GGNCC	1 cut(s)	534
PspPPI	RGGWCCY	1 cut(s)	534
PspXI	VCTCGAGB	1 cut(s)	91
PstI	CTGCAG	1 cut(s)	19
PsuI	RGATCY	2 cut(s)	25, 386
RsaI	GTAC	2 cut(s)	138, 451
RsaNI	GTAC	2 cut(s)	137, 450
RseI	CAYNNNNRTG	4 cut(s)	126, 168, 201, 428
SaqAI	TTAA	4 cut(s)	21, 42, 627, 759
SatI	GCNGC	3 cut(s)	209, 606, 735
Sau3AI	GATC	3 cut(s)	25, 181, 386
Sau96I	GGNCC	1 cut(s)	534
SchI	GAGTC	1 cut(s)	497
ScrFI	CCNGG	2 cut(s)	30, 411
SduI	GDGCHC	3 cut(s)	62, 147, 425
SetI	ASST	6 cut(s)	138, 150, 213, 227, 277, 539
SfaNI	GCATC	3 cut(s)	148, 229, 394
SfcI	CTRYAG	1 cut(s)	15
Sfr274I	CTCGAG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	534
SlaI	CTCGAG	1 cut(s)	91
SmiMI	CAYNNNNRTG	4 cut(s)	126, 168, 201, 428
SmlI	CTYRAG	1 cut(s)	91
SmoI	CTYRAG	1 cut(s)	91
Sse9I	AATT	3 cut(s)	379, 575, 629
SseBI	AGGCCT	1 cut(s)	684
SsiI	CCGC	3 cut(s)	305, 706, 787
SspI	AATATT	1 cut(s)	649
SspMI	CTAG	1 cut(s)	149
StuI	AGGCCT	1 cut(s)	684
StyD4I	CCNGG	2 cut(s)	28, 409
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	485
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	1 cut(s)	92
TasI	AATT	3 cut(s)	379, 575, 629
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	4 cut(s)	21, 42, 627, 759
Tru9I	TTAA	4 cut(s)	21, 42, 627, 759
TscAI	CASTG	1 cut(s)	351
TseI	GCWGC	3 cut(s)	208, 605, 734
TspDTI	ATGAA	2 cut(s)	453, 525
TspRI	CASTG	1 cut(s)	351
VneI	GTGCAC	1 cut(s)	421
VpaK11BI	GGWCC	1 cut(s)	534
XagI	CCTNNNNNAGG	1 cut(s)	713
XapI	RAATTY	1 cut(s)	629
XceI	RCATGY	1 cut(s)	167
XhoI	CTCGAG	1 cut(s)	91
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.