Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0017337

Physical Location & Seq

Genomic Coordinates Forward (+)

19749186 .. 19750303

Gene Structure 1118 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCTCCTGCAGGCTGCTGTAGTTAAGGATCATGGTGTGTCTGTTAACCATGTGACTCGGAGCCCTGATGGTGCTTTATTTGGTATTGCTTACTCGAGGCACATTGTTCAAATGTATTCTTATCATGGGGGTGATGACGTACAAGTGCACCTAGAGATTGATGCACATGTTGGTGGAGTAAATGATCTGGCATTCTCCCATCCCAATGAGCAGCTTTGTGTGATTACCTGTGGGGATGACAAGACCATCAAGGTGTGGGATGCTACAACCAGTGCAAAACAATATACTTTTGAAGGTCAAGAGGCTCCAGTTTATTCTGTCTGCCCACATTATAAGGAAAACATTCAGTTTATTTTTTCAATAGCACTGGATGGAAAGATAAAGGCTTGGGAGTATGACAATTTGGGATCTCGCGCTGATTATGATGCTCCTGGTCGCTGGTGCACAACCATGGCTTATAGTGCTGATGGTACAAGGTTAGTATACTTAGCTCAGAGTTTCCTTTTTCCTTTTGCTGGATGGGCAAACTATATAGTTATTTATTTCTTCTCGTCGTTTTTCTTTGGTGGTGGGTTGCAGGCTATTTTCATGTGGGACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

201

Amino Acids

22.39

Weight (kDa)

5.33

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	5 - 161	4.4e-15	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	7 - 164	1.5e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	9 - 160	7.2e-17	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	21 - 135	3.8e-07	WDR3 second beta-propeller domain
WD40_WDHD1_1st	PF24817	27 - 134	1.5e-12	WDHD1 first WD40 domain
Beta-prop_EML	PF23409	51 - 118	6.3e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	52 - 87	2.5e-07	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	58 - 162	2.2e-10	THOC3 beta-propeller domain
WD40_Prp19	PF24814	59 - 135	1.1e-07	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	67 - 161	4.8e-07	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017337)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29651
malus_domestica	MD00G1020200.v1.1 MD00G1021800.v1.1
pyrus_communis	pycom03g18610 pycom11g01420 pycom13g13820 pycom16g13720 pycom17g21150 pycom17g21220 pycom17g21300 pycom17g21370
rosa_chinensis	RchiOBHm_Chr5g0002691 RchiOBHm_Chr6g0261151

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	1 cut(s)	414
AclWI	GGATC	2 cut(s)	36, 415
AfaI	GTAC	2 cut(s)	141, 472
AfiI	CCNNNNNNNGG	1 cut(s)	515
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	3 cut(s)	110, 293, 360
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	2 cut(s)	214, 491
AluI	AGCT	2 cut(s)	214, 491
Alw21I	GWGCWC	2 cut(s)	150, 446
Alw44I	GTGCAC	2 cut(s)	146, 442
AlwI	GGATC	2 cut(s)	36, 415
Ama87I	CYCGRG	1 cut(s)	94
ApaLI	GTGCAC	2 cut(s)	146, 442
ApeKI	GCWGC	2 cut(s)	14, 211
Asp700I	GAANNNNTTC	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	416
AsuHPI	GGTGA	1 cut(s)	143
AvaI	CYCGRG	1 cut(s)	94
BaeGI	GKGCMC	2 cut(s)	150, 446
BanII	GRGCYC	1 cut(s)	65
Bbv12I	GWGCWC	2 cut(s)	150, 446
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	6 cut(s)	62, 207, 254, 365, 461, 513
BciT130I	CCWGG	1 cut(s)	432
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	2 cut(s)	8, 18
BisI	GCNGC	2 cut(s)	15, 212
BlsI	GCNGC	2 cut(s)	16, 213
Bme1390I	CCNGG	1 cut(s)	432
BmeT110I	CYCGRG	1 cut(s)	94
BmiI	GGNNCC	2 cut(s)	62, 306
BmrFI	CCNGG	1 cut(s)	432
BmsI	GCATC	3 cut(s)	151, 250, 415
BpmI	CTGGAG	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	450
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse1I	ACTGG	3 cut(s)	270, 308, 372
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	450
BseGI	GGATG	5 cut(s)	199, 241, 265, 376, 524
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMII	CTCAG	1 cut(s)	506
BseNI	ACTGG	3 cut(s)	270, 308, 372
BseSI	GKGCMC	2 cut(s)	150, 446
BseXI	GCAGC	1 cut(s)	223
Bsh1236I	CGCG	1 cut(s)	414
BsiHKAI	GWGCWC	2 cut(s)	150, 446
BsiHKCI	CYCGRG	1 cut(s)	94
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmI	GAATGC	1 cut(s)	191
BsoBI	CYCGRG	1 cut(s)	94
Bsp1286I	GDGCHC	3 cut(s)	65, 150, 446
Bsp143I	GATC	3 cut(s)	28, 184, 407
Bsp19I	CCATGG	1 cut(s)	450
BspCNI	CTCAG	1 cut(s)	505
BspFNI	CGCG	1 cut(s)	414
BspLI	GGNNCC	2 cut(s)	62, 306
BspMAI	CTGCAG	1 cut(s)	12
BspPI	GGATC	2 cut(s)	36, 415
BsrI	ACTGG	3 cut(s)	270, 308, 372
BssECI	CCNNGG	1 cut(s)	450
BssMI	GATC	3 cut(s)	28, 184, 407
BssNAI	GTATAC	1 cut(s)	484
BssT1I	CCWWGG	1 cut(s)	450
Bst1107I	GTATAC	1 cut(s)	484
Bst2UI	CCWGG	1 cut(s)	432
BstC8I	GCNNGC	2 cut(s)	12, 579
BstDEI	CTNAG	2 cut(s)	487, 492
BstDSI	CCRYGG	1 cut(s)	450
BstF5I	GGATG	5 cut(s)	199, 241, 265, 376, 524
BstFNI	CGCG	1 cut(s)	414
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	3 cut(s)	31, 187, 410
BstMBI	GATC	3 cut(s)	28, 184, 407
BstMWI	GCNNNNNNNGC	2 cut(s)	461, 521
BstNI	CCWGG	1 cut(s)	432
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	430
BstSFI	CTRYAG	2 cut(s)	8, 18
BstSLI	GKGCMC	2 cut(s)	150, 446
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BstZ17I	GTATAC	1 cut(s)	484
BtgI	CCRYGG	1 cut(s)	450
BtsCI	GGATG	5 cut(s)	199, 241, 265, 376, 524
BtsIMutI	CAGTG	2 cut(s)	277, 365
Cac8I	GCNNGC	2 cut(s)	12, 579
CfoI	GCGC	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	140, 471
CviAII	CATG	6 cut(s)	32, 50, 125, 167, 451, 589
CviJI	RGCY	8 cut(s)	14, 63, 214, 305, 386, 455, 491, 581
CviKI_1	RGCY	8 cut(s)	14, 63, 214, 305, 386, 455, 491, 581
CviQI	GTAC	2 cut(s)	140, 471
DdeI	CTNAG	2 cut(s)	487, 492
DpnI	GATC	3 cut(s)	30, 186, 409
DpnII	GATC	3 cut(s)	28, 184, 407
Eco130I	CCWWGG	1 cut(s)	450
Eco24I	GRGCYC	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	450
FaeI	CATG	6 cut(s)	35, 53, 128, 170, 454, 592
FatI	CATG	6 cut(s)	31, 49, 124, 166, 450, 588
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	2 cut(s)	15, 212
FokI	GGATG	5 cut(s)	186, 248, 272, 383, 531
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	2 cut(s)	15, 212
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	2 cut(s)	15, 212
GsuI	CTGGAG	1 cut(s)	291
HhaI	GCGC	1 cut(s)	416
Hin1II	CATG	6 cut(s)	35, 53, 128, 170, 454, 592
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	55
HpaI	GTTAAC	1 cut(s)	46
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	4 cut(s)	46, 148, 444, 484
Hpy188I	TCNGA	2 cut(s)	60, 495
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	4 cut(s)	46, 148, 444, 484
Hpy99I	CGWCG	1 cut(s)	556
HpyAV	CCTTC	1 cut(s)	287
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	6 cut(s)	10, 148, 164, 275, 444, 577
HpyF10VI	GCNNNNNNNGC	2 cut(s)	461, 521
HpyF3I	CTNAG	2 cut(s)	487, 492
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	6 cut(s)	35, 53, 128, 170, 454, 592
HspAI	GCGC	1 cut(s)	414
KspAI	GTTAAC	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	28, 184, 407
LmnI	GCTCC	4 cut(s)	9, 60, 310, 433
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	3 cut(s)	151, 250, 415
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	3 cut(s)	30, 186, 409
MboI	GATC	3 cut(s)	28, 184, 407
MboII	GAAGA	1 cut(s)	538
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	3 cut(s)	65, 150, 446
MluCI	AATT	1 cut(s)	400
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	2 cut(s)	90, 295
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	2 cut(s)	24, 45
MslI	CAYNNNNRTG	5 cut(s)	129, 171, 204, 251, 449
MspR9I	CCNGG	1 cut(s)	432
Mva1269I	GAATGC	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	432
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	2 cut(s)	461, 521
NcoI	CCATGG	1 cut(s)	450
NdeII	GATC	3 cut(s)	28, 184, 407
NlaIII	CATG	6 cut(s)	35, 53, 128, 170, 454, 592
NlaIV	GGNNCC	2 cut(s)	62, 306
NmuCI	GTSAC	1 cut(s)	52
NspI	RCATGY	1 cut(s)	170
PaeR7I	CTCGAG	1 cut(s)	94
PciI	ACATGT	1 cut(s)	166
PctI	GAATGC	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	342
PkrI	GCNGC	2 cut(s)	16, 213
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PscI	ACATGT	1 cut(s)	166
PsiI	TTATAA	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	2 cut(s)	62, 306
PspXI	VCTCGAGB	1 cut(s)	94
PstI	CTGCAG	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	407
RsaI	GTAC	2 cut(s)	141, 472
RsaNI	GTAC	2 cut(s)	140, 471
RseI	CAYNNNNRTG	5 cut(s)	129, 171, 204, 251, 449
SaqAI	TTAA	2 cut(s)	24, 45
SatI	GCNGC	2 cut(s)	15, 212
Sau3AI	GATC	3 cut(s)	28, 184, 407
SbfI	CCTGCAGG	1 cut(s)	12
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	432
SdaI	CCTGCAGG	1 cut(s)	12
SduI	GDGCHC	3 cut(s)	65, 150, 446
SetI	ASST	8 cut(s)	141, 153, 216, 230, 255, 298, 479, 493
SfaNI	GCATC	3 cut(s)	151, 250, 415
SfcI	CTRYAG	2 cut(s)	8, 18
Sfr274I	CTCGAG	1 cut(s)	94
SlaI	CTCGAG	1 cut(s)	94
SmiMI	CAYNNNNRTG	5 cut(s)	129, 171, 204, 251, 449
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse8387I	CCTGCAGG	1 cut(s)	12
Sse9I	AATT	1 cut(s)	400
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	430
StyI	CCWWGG	1 cut(s)	450
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	95
TasI	AATT	1 cut(s)	400
Tru1I	TTAA	2 cut(s)	24, 45
Tru9I	TTAA	2 cut(s)	24, 45
TscAI	CASTG	2 cut(s)	277, 372
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	2 cut(s)	14, 211
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	577
TspRI	CASTG	2 cut(s)	277, 372
VneI	GTGCAC	2 cut(s)	146, 442
XceI	RCATGY	1 cut(s)	170
XhoI	CTCGAG	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	483
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.