Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0016891

Physical Location & Seq

Genomic Coordinates Forward (+)

20487672 .. 20488431

Gene Structure 760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAAATTGTTATACCTGAGTTCGAAACATTTTCATCGACAAAAGAGCTTTCGAGAATGAAGCGTGCAAGTGCAAGCATTAGTGAGGAAGGAATTGACGACAATGGTTCTATGTTGGTGCACCAAAGGATAGGAAAGGAAAGAGAATTTACTCGGTGCAAGTTGAAGACTCTGTCAAGTGGTAAAAAACCGTTGCAGGATTCAAGCGCTTCGGATTCTAAAAAAGCAGAGAAGAAAAAGCTGCTGCTTGGAGGTGGTTCAACGAGTAAGGCTCTCAATGTTTCCGGTAAGGGGAAGGCTGTAGTGTGCACTGGTGAAGTTGAAGAACTAAATGAGCGACTGAGAGTTCTTGAAGAAGAAACTGAAACTATGAAGCAAGAAATGTTGGAGATTGCAGAAGAGAGAAACAAGTTGATGAAGGAGATATATCAGCAGTTTCAGATGCTAGAAATTGATCCCAGATGTTTGGCAGCAATAGAACTCAAGTCTATCGATGGAAACACAAGTATCTACTCGTCACAGGATCAAAGAATGGGAGCTAGTTTGTCAGATATTTTACGCCGAGATCAAAATCCATCTCTGGTCAACAGAAATCTTAGAGCTAATACTTTGGCGATCCTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

23.3

Weight (kDa)

6.66

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016891)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29300
malus_domestica	MD17G1216200.v1.1
prunus_persica	Prupe.3G092300_v2.0.a1
pyrus_communis	pycom17g22080
rosa_chinensis	RchiOBHm_Chr2g0134481
rosa_laevigata	RLG00000019395
rosa_multiflora	Rmu_sc0005464.1_g000026
rosa_roxburghii	Rroxscaffold_2G00110180
rosa_rugosa	Rorug02G0317400
rosa_samantha	Rh2AG375800 Rh2BG375800 Rh2CG354000 Rh2DG393100
rosa_wichuraiana	Rw2G030140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	449, 531, 610
AcsI	RAATTY	1 cut(s)	146
AfeI	AGCGCT	1 cut(s)	208
AfiI	CCNNNNNNNGG	1 cut(s)	291
AgsI	TTSAA	5 cut(s)	166, 204, 261, 323, 353
AluBI	AGCT	4 cut(s)	49, 241, 539, 602
AluI	AGCT	4 cut(s)	49, 241, 539, 602
Alw21I	GWGCWC	2 cut(s)	123, 311
Alw44I	GTGCAC	2 cut(s)	119, 307
AlwI	GGATC	3 cut(s)	449, 531, 610
Aor51HI	AGCGCT	1 cut(s)	208
ApaLI	GTGCAC	2 cut(s)	119, 307
ApeKI	GCWGC	3 cut(s)	241, 244, 470
ApoI	RAATTY	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	326
AsuII	TTCGAA	1 cut(s)	24
BaeGI	GKGCMC	2 cut(s)	123, 311
BaeI	ACNNNNGTAYC	2 cut(s)	490, 523
BbsI	GAAGAC	1 cut(s)	173
Bbv12I	GWGCWC	2 cut(s)	123, 311
BbvI	GCAGC	3 cut(s)	228, 231, 482
BccI	CCATC	2 cut(s)	488, 583
BfaI	CTAG	2 cut(s)	446, 540
BfmI	CTRYAG	1 cut(s)	300
BfoI	RGCGCY	1 cut(s)	210
BisI	GCNGC	3 cut(s)	242, 245, 471
BlsI	GCNGC	3 cut(s)	243, 246, 472
BmsI	GCATC	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	173
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	467
Bsa29I	ATCGAT	1 cut(s)	492
BsaBI	GATNNNNATC	1 cut(s)	570
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	316
Bse8I	GATNNNNATC	1 cut(s)	570
BseCI	ATCGAT	1 cut(s)	492
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMII	CTCAG	2 cut(s)	9, 332
BseNI	ACTGG	1 cut(s)	316
BseSI	GKGCMC	2 cut(s)	123, 311
BseXI	GCAGC	3 cut(s)	228, 231, 482
BshVI	ATCGAT	1 cut(s)	492
BsiHKAI	GWGCWC	2 cut(s)	123, 311
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	291
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	2 cut(s)	123, 311
Bsp143I	GATC	4 cut(s)	454, 523, 565, 615
BspCNI	CTCAG	2 cut(s)	10, 333
BspDI	ATCGAT	1 cut(s)	492
BspPI	GGATC	3 cut(s)	449, 531, 610
BspT104I	TTCGAA	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	316
BssMI	GATC	4 cut(s)	454, 523, 565, 615
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	393
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	66, 76
BstDEI	CTNAG	3 cut(s)	18, 341, 596
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	4 cut(s)	457, 526, 568, 618
BstMBI	GATC	4 cut(s)	454, 523, 565, 615
BstSFI	CTRYAG	1 cut(s)	300
BstSLI	GKGCMC	2 cut(s)	123, 311
BstV1I	GCAGC	3 cut(s)	228, 231, 482
BstV2I	GAAGAC	1 cut(s)	173
BstXI	CCANNNNNNTGG	1 cut(s)	466
Bsu15I	ATCGAT	1 cut(s)	492
BsuTUI	ATCGAT	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	2 cut(s)	66, 76
CfoI	GCGC	1 cut(s)	209
ClaI	ATCGAT	1 cut(s)	492
CviAII	CATG	1 cut(s)	622
CviJI	RGCY	6 cut(s)	49, 241, 272, 299, 539, 602
CviKI_1	RGCY	6 cut(s)	49, 241, 272, 299, 539, 602
DdeI	CTNAG	3 cut(s)	18, 341, 596
DpnI	GATC	4 cut(s)	456, 525, 567, 617
DpnII	GATC	4 cut(s)	454, 523, 565, 615
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco47III	AGCGCT	1 cut(s)	208
FaeI	CATG	1 cut(s)	625
FaiI	YATR	5 cut(s)	14, 113, 371, 427, 623
FatI	CATG	1 cut(s)	621
Fnu4HI	GCNGC	3 cut(s)	242, 245, 471
Fsp4HI	GCNGC	3 cut(s)	242, 245, 471
FspBI	CTAG	2 cut(s)	446, 540
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	3 cut(s)	242, 245, 471
HaeII	RGCGCY	1 cut(s)	210
HapII	CCGG	1 cut(s)	285
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	1 cut(s)	625
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HinfI	GANTC	3 cut(s)	169, 200, 215
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	3 cut(s)	121, 309, 586
Hpy188I	TCNGA	3 cut(s)	214, 441, 550
Hpy188III	TCNNGA	2 cut(s)	54, 350
Hpy8I	GTNNAC	3 cut(s)	121, 309, 586
HpyAV	CCTTC	3 cut(s)	83, 289, 412
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	7 cut(s)	68, 74, 121, 159, 196, 309, 395
HpyF3I	CTNAG	3 cut(s)	18, 341, 596
Hsp92II	CATG	1 cut(s)	625
HspAI	GCGC	1 cut(s)	207
Kzo9I	GATC	4 cut(s)	454, 523, 565, 615
LmnI	GCTCC	1 cut(s)	536
LpnPI	CCDG	7 cut(s)	30, 182, 297, 298, 472, 506, 566
Lsp1109I	GCAGC	3 cut(s)	228, 231, 482
LweI	GCATC	1 cut(s)	432
MaeI	CTAG	2 cut(s)	446, 540
MaeIII	GTNAC	1 cut(s)	516
MalI	GATC	4 cut(s)	456, 525, 567, 617
MboI	GATC	4 cut(s)	454, 523, 565, 615
MboII	GAAGA	6 cut(s)	178, 244, 335, 365, 368, 410
MhlI	GDGCHC	2 cut(s)	123, 311
MluCI	AATT	4 cut(s)	6, 93, 146, 450
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	2 cut(s)	79, 245
MspI	CCGG	1 cut(s)	285
NdeII	GATC	4 cut(s)	454, 523, 565, 615
NlaIII	CATG	1 cut(s)	625
NmeAIII	GCCGAG	1 cut(s)	587
NmuCI	GTSAC	1 cut(s)	516
NspV	TTCGAA	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	200, 215
PflFI	GACNNNGTC	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	243, 246, 472
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PsyI	GACNNNGTC	1 cut(s)	172
SatI	GCNGC	3 cut(s)	242, 245, 471
Sau3AI	GATC	4 cut(s)	454, 523, 565, 615
SchI	GAGTC	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	123, 311
SetI	ASST	6 cut(s)	19, 51, 243, 256, 541, 604
SfaNI	GCATC	1 cut(s)	432
SfcI	CTRYAG	1 cut(s)	300
SfuI	TTCGAA	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	4 cut(s)	6, 93, 146, 450
SspMI	CTAG	2 cut(s)	446, 540
TaaI	ACNGT	1 cut(s)	192
TaqI	TCGA	4 cut(s)	24, 38, 53, 492
TasI	AATT	4 cut(s)	6, 93, 146, 450
TfiI	GAWTC	2 cut(s)	200, 215
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	516
TseI	GCWGC	3 cut(s)	241, 244, 470
Tsp45I	GTSAC	1 cut(s)	516
TspDTI	ATGAA	4 cut(s)	24, 74, 386, 431
TspRI	CASTG	1 cut(s)	316
Tth111I	GACNNNGTC	1 cut(s)	172
VneI	GTGCAC	2 cut(s)	119, 307
XapI	RAATTY	1 cut(s)	146
XspI	CTAG	2 cut(s)	446, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.