pycom17g22100

Phosphopantothenoylcysteine decarboxylase subunit VHS3-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
20492241 .. 20494144
1904 bp
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UTR
Exon/CDS
Intron
pycom17g22100.1

Sequence Viewer

Length: 516 bp
ATGGAGATCCAGAGTTCCCGGCACACTACTGCTGCTGATTTTATGCTGCTTTCTTTGCTGGTGAATGCTGCCATTCTTGCTCACCAATCTCTTCTTTTACTGATTTTTCAGGTTGGATCTTTGCGTGACGATCGTGATGCATTTCAAGATTCAGTGAGAACAGATCAGAGGTTTCCAATGTCCGAACTTAATAAAGGGAAAGAGCCTGATGCTGAAAACAACGATGCAGGTGAACTAGAGGATAACGACTCTGATGATGATGAAGATGTCGACGATGAGGACAGTGACGATAATGATGAGGATGACGGTAATGATTCGGAAGAAGATAGTGATGATGACGAAGAAGATTCTGATGATGAGGTTGAGGCTAATGGCGATGGAGAAAACGATGATGAAGATGATGATGAAGATGATGATGGTGATGGTGATGATGATGATGAAGACGATGATGATGAGGAGGATGAGGATGACGAGGAGCTTAACAAGTTGCCTTCAGAAAGAAAGAAAGTAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.2

Weight (kDa)

4.05

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017336)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g29250
malus_domestica MD17G1216400.v1.1
prunus_persica Prupe.3G092600_v2.0.a1
pyrus_communis pycom17g22100
rosa_chinensis RchiOBHm_Chr2g0134421
rosa_multiflora Rmu_sc0005464.1_g000007 Rmu_sc0005571.1_g000034
rosa_rugosa Rorug02G0317000
rosa_samantha Rh2AG369600 Rh2BG375500 Rh2CG353200 Rh2DG392600
rosa_wichuraiana Rw2G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 218
Acc36I ACCTGC 1 cut(s) 218
AccI GTMKAC 1 cut(s) 270
AclWI GGATC 1 cut(s) 124
AcuI CTGAAG 1 cut(s) 477
AgsI TTSAA 1 cut(s) 146
AluBI AGCT 1 cut(s) 478
AluI AGCT 1 cut(s) 478
AlwI GGATC 1 cut(s) 124
ApeKI GCWGC 3 cut(s) 32, 46, 68
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 5 cut(s) 73, 74, 242, 431, 437
BbsI GAAGAC 1 cut(s) 447
BbvI GCAGC 3 cut(s) 19, 33, 55
BccI CCATC 3 cut(s) 371, 410, 416
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BcnI CCSGG 1 cut(s) 19
BfaI CTAG 1 cut(s) 236
BfuAI ACCTGC 1 cut(s) 218
BisI GCNGC 3 cut(s) 33, 47, 69
BlsI GCNGC 3 cut(s) 34, 48, 70
Bme1390I CCNGG 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 19
BmsI GCATC 3 cut(s) 127, 199, 214
BpiI GAAGAC 1 cut(s) 447
BpuMI CCSGG 1 cut(s) 19
BseGI GGATG 3 cut(s) 307, 466, 472
BseRI GAGGAG 2 cut(s) 470, 488
BseXI GCAGC 3 cut(s) 19, 33, 55
Bsh1285I CGRYCG 1 cut(s) 133
BsiEI CGRYCG 1 cut(s) 133
BsiSI CCGG 1 cut(s) 19
BsmI GAATGC 1 cut(s) 70
Bsp143I GATC 4 cut(s) 6, 116, 130, 163
BspMI ACCTGC 1 cut(s) 218
BspPI GGATC 1 cut(s) 124
BssMI GATC 4 cut(s) 6, 116, 130, 163
Bst4CI ACNGT 2 cut(s) 284, 308
Bst6I CTCTTC 1 cut(s) 96
BstF5I GGATG 3 cut(s) 307, 466, 472
BstKTI GATC 4 cut(s) 9, 119, 133, 166
BstMBI GATC 4 cut(s) 6, 116, 130, 163
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 55, 77
BstSCI CCNGG 1 cut(s) 17
BstV1I GCAGC 3 cut(s) 19, 33, 55
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 2 cut(s) 6, 116
BstYI RGATCY 2 cut(s) 6, 116
BtgZI GCGATG 1 cut(s) 390
BtsCI GGATG 3 cut(s) 307, 466, 472
BtsIMutI CAGTG 2 cut(s) 159, 289
BveI ACCTGC 1 cut(s) 218
CviJI RGCY 3 cut(s) 205, 368, 478
CviKI_1 RGCY 3 cut(s) 205, 368, 478
DpnI GATC 4 cut(s) 8, 118, 132, 165
DpnII GATC 4 cut(s) 6, 116, 130, 163
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 477
EcoT22I ATGCAT 1 cut(s) 142
FaiI YATR 1 cut(s) 44
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 3 cut(s) 33, 47, 69
FokI GGATG 3 cut(s) 314, 473, 479
Fsp4HI GCNGC 3 cut(s) 33, 47, 69
FspBI CTAG 1 cut(s) 236
GluI GCNGC 3 cut(s) 33, 47, 69
HapII CCGG 1 cut(s) 19
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 4 cut(s) 149, 248, 314, 347
HpaII CCGG 1 cut(s) 19
HphI GGTGA 5 cut(s) 73, 74, 242, 431, 437
Hpy166II GTNNAC 2 cut(s) 233, 271
Hpy188I TCNGA 6 cut(s) 168, 184, 253, 319, 352, 496
Hpy188III TCNNGA 3 cut(s) 10, 134, 146
Hpy8I GTNNAC 2 cut(s) 233, 271
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 501
HpyCH4III ACNGT 2 cut(s) 284, 308
HpyCH4V TGCA 2 cut(s) 140, 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 77
Kzo9I GATC 4 cut(s) 6, 116, 130, 163
LmnI GCTCC 1 cut(s) 475
LpnPI CCDG 6 cut(s) 23, 32, 44, 95, 213, 219
Lsp1109I GCAGC 3 cut(s) 19, 33, 55
LweI GCATC 3 cut(s) 127, 199, 214
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 2 cut(s) 125, 284
MalI GATC 4 cut(s) 8, 118, 132, 165
MboI GATC 4 cut(s) 6, 116, 130, 163
MboII GAAGA 9 cut(s) 83, 275, 332, 335, 353, 356, 407, 419, 452
MflI RGATCY 2 cut(s) 6, 116
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 94
Mph1103I ATGCAT 1 cut(s) 142
MseI TTAA 2 cut(s) 189, 480
MspI CCGG 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 19
Mva1269I GAATGC 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 55, 77
NciI CCSGG 1 cut(s) 19
NdeII GATC 4 cut(s) 6, 116, 130, 163
NmuCI GTSAC 2 cut(s) 125, 284
NsiI ATGCAT 1 cut(s) 142
PaqCI CACCTGC 1 cut(s) 218
PctI GAATGC 1 cut(s) 70
PfeI GAWTC 3 cut(s) 149, 314, 347
PkrI GCNGC 3 cut(s) 34, 48, 70
Ple19I CGATCG 1 cut(s) 133
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PsuI RGATCY 2 cut(s) 6, 116
PvuI CGATCG 1 cut(s) 133
SalI GTCGAC 1 cut(s) 269
SaqAI TTAA 2 cut(s) 189, 480
SatI GCNGC 3 cut(s) 33, 47, 69
Sau3AI GATC 4 cut(s) 6, 116, 130, 163
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 19
SetI ASST 5 cut(s) 114, 173, 232, 363, 480
SfaNI GCATC 3 cut(s) 127, 199, 214
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 17
TaaI ACNGT 2 cut(s) 284, 308
TaqI TCGA 1 cut(s) 270
TfiI GAWTC 3 cut(s) 149, 314, 347
Tru1I TTAA 2 cut(s) 189, 480
Tru9I TTAA 2 cut(s) 189, 480
TscAI CASTG 2 cut(s) 159, 289
TseFI GTSAC 2 cut(s) 125, 284
TseI GCWGC 3 cut(s) 32, 46, 68
Tsp45I GTSAC 2 cut(s) 125, 284
TspDTI ATGAA 4 cut(s) 276, 408, 420, 453
TspRI CASTG 2 cut(s) 159, 289
XmiI GTMKAC 1 cut(s) 270
XspI CTAG 1 cut(s) 236
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.