Rorug02G0317000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017336
Physical Location & Seq
Reverse (-)
38677922 .. 38678630
709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0317000.1

Sequence Viewer

Length: 624 bp
ATGAAGTATAAGCCTCAAGCTTATTCATTTGCCGCGGATTTTATGAAATTAATTAGAGAGGAGGTCAGGAATCAGGAGAGCACTAGCGAGGTGGTGAATGCTAACTACTCAGCTGCATTGTTGGGATTAGCATATGGAGACACTGATCTTGTGGCCACAGGGTCAATGCTTGCAGCATTGGAAATCCAGGCAGCTCAAATGTGGTGGCATGTAAGAGAGGGAGATAACATTTATGCACCAGATTACACAAAGGAAAGTCGGGTAGTTGGAGTACTGCTGTGGGCTAATAAGAGAAACAGTAATCTTTGGTTTGCGCCTGCACAGCGGAGAGAGTGCCTGCTTGGAATCCAGCTGCTGCCTATTGTACCTATTACTGAGGAATTGTTCTCTGATGTTGGCTATGTTAGGGAACTTGTGAAGTGGACTGAACCGGCTCTTATTAGAGAGGGTGTTGGGGAAGGATGGAAAGGGTTTGTGTACTCTTTGCAAGGGATTTATGACAAGAATGGTGCTTTGAATGGTTTCGATGATGGCAACTCGCTTACGAATCTGTTATGGTGGATCGACAGCAGAGGTGAGGAAAGAGATGGATGCCAAGTCGGAGAGAAGATTTGCTCAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.29

Weight (kDa)

4.79

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro81C PF17652 20 - 179 3.1e-36 Glycosyl hydrolase family 81 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017336)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g29250
malus_domestica MD17G1216400.v1.1
prunus_persica Prupe.3G092600_v2.0.a1
pyrus_communis pycom17g22100
rosa_chinensis RchiOBHm_Chr2g0134421
rosa_multiflora Rmu_sc0005464.1_g000007 Rmu_sc0005571.1_g000034
rosa_rugosa Rorug02G0317000
rosa_samantha Rh2AG369600 Rh2BG375500 Rh2CG353200 Rh2DG392600
rosa_wichuraiana Rw2G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 35
AciI CCGC 3 cut(s) 33, 35, 325
AclWI GGATC 1 cut(s) 569
AcoI YGGCCR 1 cut(s) 153
AfaI GTAC 3 cut(s) 273, 366, 479
AgsI TTSAA 1 cut(s) 517
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 4 cut(s) 20, 113, 194, 352
AluI AGCT 4 cut(s) 20, 113, 194, 352
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 1 cut(s) 569
AlwNI CAGNNNCTG 1 cut(s) 355
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 5 cut(s) 113, 173, 191, 352, 355
AseI ATTAAT 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 521
AspLEI GCGC 1 cut(s) 316
AsuHPI GGTGA 2 cut(s) 106, 587
BalI TGGCCA 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 5 cut(s) 100, 185, 203, 339, 342
BccI CCATC 3 cut(s) 456, 524, 581
BciT130I CCWGG 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 1 cut(s) 84
BisI GCNGC 6 cut(s) 33, 114, 174, 192, 353, 356
BlsI GCNGC 6 cut(s) 34, 115, 175, 193, 354, 357
BmcAI AGTACT 1 cut(s) 273
Bme1390I CCNGG 1 cut(s) 188
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 581
BsaJI CCNNGG 1 cut(s) 33
Bse118I RCCGGY 1 cut(s) 430
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 2 cut(s) 467, 596
BseMII CTCAG 2 cut(s) 123, 366
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 5 cut(s) 100, 185, 203, 339, 342
BsgI GTGCAG 1 cut(s) 303
Bsh1236I CGCG 1 cut(s) 35
BshFI GGCC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 83
BsiSI CCGG 1 cut(s) 431
BsmAI GTCTC 1 cut(s) 132
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 2 cut(s) 145, 561
BspACI CCGC 3 cut(s) 33, 35, 325
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 2 cut(s) 122, 367
BspFNI CGCG 1 cut(s) 35
BspPI GGATC 1 cut(s) 569
BsrFI RCCGGY 1 cut(s) 430
BssAI RCCGGY 1 cut(s) 430
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 2 cut(s) 145, 561
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 299
BstC8I GCNNGC 3 cut(s) 171, 318, 338
BstDEI CTNAG 3 cut(s) 109, 375, 616
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 467, 596
BstFNI CGCG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 2 cut(s) 148, 564
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 2 cut(s) 145, 561
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstNI CCWGG 1 cut(s) 188
BstNSI RCATGY 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 186
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 5 cut(s) 100, 185, 203, 339, 342
BsuRI GGCC 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 2 cut(s) 467, 596
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 3 cut(s) 171, 318, 338
CaiI CAGNNNCTG 1 cut(s) 355
CfoI GCGC 1 cut(s) 316
Cfr10I RCCGGY 1 cut(s) 430
Cfr42I CCGCGG 1 cut(s) 36
Csp6I GTAC 3 cut(s) 272, 365, 478
CspCI CAANNNNNGTGG 2 cut(s) 185, 220
CviAII CATG 1 cut(s) 209
CviJI RGCY 9 cut(s) 13, 20, 113, 155, 194, 284, 352, 399, 434
CviKI_1 RGCY 9 cut(s) 13, 20, 113, 155, 194, 284, 352, 399, 434
CviQI GTAC 3 cut(s) 272, 365, 478
DdeI CTNAG 3 cut(s) 109, 375, 616
DpnI GATC 2 cut(s) 147, 563
DpnII GATC 2 cut(s) 145, 561
EaeI YGGCCR 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 186
FaeI CATG 1 cut(s) 212
FaiI YATR 9 cut(s) 9, 44, 133, 135, 210, 234, 402, 498, 556
FatI CATG 1 cut(s) 208
FauNDI CATATG 1 cut(s) 133
Fnu4HI GCNGC 6 cut(s) 33, 114, 174, 192, 353, 356
FokI GGATG 2 cut(s) 474, 603
Fsp4HI GCNGC 6 cut(s) 33, 114, 174, 192, 353, 356
FspBI CTAG 1 cut(s) 84
GlaI GCGC 1 cut(s) 315
GluI GCNGC 6 cut(s) 33, 114, 174, 192, 353, 356
HaeIII GGCC 1 cut(s) 155
HapII CCGG 1 cut(s) 431
HhaI GCGC 1 cut(s) 316
Hin1II CATG 1 cut(s) 212
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 3 cut(s) 70, 345, 547
HpaII CCGG 1 cut(s) 431
HphI GGTGA 2 cut(s) 106, 587
Hpy166II GTNNAC 2 cut(s) 423, 478
Hpy188I TCNGA 2 cut(s) 391, 602
Hpy188III TCNNGA 2 cut(s) 67, 74
Hpy8I GTNNAC 2 cut(s) 423, 478
HpyAV CCTTC 1 cut(s) 452
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4V TGCA 5 cut(s) 116, 173, 236, 320, 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 3 cut(s) 109, 375, 616
Hsp92II CATG 1 cut(s) 212
HspAI GCGC 1 cut(s) 314
KspI CCGCGG 1 cut(s) 36
Kzo9I GATC 2 cut(s) 145, 561
Lsp1109I GCAGC 5 cut(s) 100, 185, 203, 339, 342
LweI GCATC 1 cut(s) 581
MaeI CTAG 1 cut(s) 84
MalI GATC 2 cut(s) 147, 563
MboI GATC 2 cut(s) 145, 561
MboII GAAGA 1 cut(s) 619
MhlI GDGCHC 1 cut(s) 83
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 3 cut(s) 47, 51, 380
MluNI TGGCCA 1 cut(s) 155
MmeI TCCRAC 2 cut(s) 247, 580
MnlI CCTC 9 cut(s) 24, 52, 55, 82, 211, 370, 439, 566, 571
Mox20I TGGCCA 1 cut(s) 155
MroXI GAANNNNTTC 1 cut(s) 521
MscI TGGCCA 1 cut(s) 155
MseI TTAA 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 155
MspA1I CMGCKG 4 cut(s) 35, 113, 325, 352
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 1 cut(s) 188
Mva1269I GAATGC 1 cut(s) 103
MvaI CCWGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 322
NdeI CATATG 1 cut(s) 133
NdeII GATC 2 cut(s) 145, 561
NlaIII CATG 1 cut(s) 212
NspI RCATGY 1 cut(s) 212
PctI GAATGC 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 521
PfeI GAWTC 3 cut(s) 70, 345, 547
PkrI GCNGC 6 cut(s) 34, 115, 175, 193, 354, 357
PshBI ATTAAT 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 355
PvuII CAGCTG 2 cut(s) 113, 352
RsaI GTAC 3 cut(s) 273, 366, 479
RsaNI GTAC 3 cut(s) 272, 365, 478
SacII CCGCGG 1 cut(s) 36
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 6 cut(s) 33, 114, 174, 192, 353, 356
Sau3AI GATC 2 cut(s) 145, 561
ScaI AGTACT 1 cut(s) 273
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 1 cut(s) 83
SetI ASST 8 cut(s) 22, 66, 93, 115, 196, 354, 370, 577
SfaNI GCATC 1 cut(s) 581
Sfr303I CCGCGG 1 cut(s) 36
SgrBI CCGCGG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 15
SmoI CTYRAG 1 cut(s) 15
Sse9I AATT 3 cut(s) 47, 51, 380
SsiI CCGC 3 cut(s) 33, 35, 325
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 299
TaqI TCGA 2 cut(s) 525, 564
TasI AATT 3 cut(s) 47, 51, 380
TatI WGTACW 2 cut(s) 271, 477
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 3 cut(s) 70, 345, 547
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 1 cut(s) 148
TseI GCWGC 5 cut(s) 113, 173, 191, 352, 355
TspDTI ATGAA 3 cut(s) 15, 17, 59
TspRI CASTG 1 cut(s) 148
VspI ATTAAT 1 cut(s) 50
XceI RCATGY 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 521
XspI CTAG 1 cut(s) 84
ZrmI AGTACT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.