Rmu_sc0005464.1_g000007

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005464.1
Physical Location & Seq
Forward (+)
19564 .. 21499
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005464.1_g000007.1.cds

Sequence Viewer

Length: 513 bp
atggatatccacactctttctaatggtgctgctgatctcgacagccttaagtgctctctggtggaatctttgttggctgagacagcgattcttgctcacaagtcttttcttttactactcttgctggtttggtcttcacctaaccaaaaaaatgtgcttctgaattcagtgagaacagatcagaggtttccaatgtctgaacttagtaaagtgaaagagcctgatgctgaaaacaacgatgcaggtgacgcagaggatgacgatgacgatgacaaggaggatgaggatagtgatgatgatgatgaagatgatggtaatgactcagaagaagacagtgatgatgatgaagaggattctgatgatgaggttgaggctactggttatggagaaagtgatgacgatgatgaggatgaggatgacgacagtgacgaggatgatgatagtgacgacgatgacgatgaagatgaagatgacgaagagcaattcaagttaccttcacaaagaaagaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.02

Weight (kDa)

4.05

Isoelectric Point (pI)

46.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017336)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g29250
malus_domestica MD17G1216400.v1.1
prunus_persica Prupe.3G092600_v2.0.a1
pyrus_communis pycom17g22100
rosa_chinensis RchiOBHm_Chr2g0134421
rosa_multiflora Rmu_sc0005464.1_g000007 Rmu_sc0005571.1_g000034
rosa_rugosa Rorug02G0317000
rosa_samantha Rh2AG369600 Rh2BG375500 Rh2CG353200 Rh2DG392600
rosa_wichuraiana Rw2G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 233
Acc36I ACCTGC 1 cut(s) 233
AcsI RAATTY 1 cut(s) 163
AflII CTTAAG 1 cut(s) 47
AgsI TTSAA 1 cut(s) 487
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 163
AsuHPI GGTGA 2 cut(s) 129, 257
BbsI GAAGAC 2 cut(s) 126, 336
Bbv12I GWGCWC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 74
BfrI CTTAAG 1 cut(s) 47
BfuAI ACCTGC 1 cut(s) 233
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
BmsI GCATC 2 cut(s) 214, 229
BpiI GAAGAC 2 cut(s) 126, 336
Bse1I ACTGG 1 cut(s) 382
BseGI GGATG 5 cut(s) 262, 286, 415, 421, 439
BseMII CTCAG 2 cut(s) 69, 336
BseNI ACTGG 1 cut(s) 382
BseXI GCAGC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 34, 178
BspCNI CTCAG 2 cut(s) 70, 335
BspMI ACCTGC 1 cut(s) 233
BspQI GCTCTTC 1 cut(s) 471
BspTI CTTAAG 1 cut(s) 47
BsrI ACTGG 1 cut(s) 382
BssMI GATC 2 cut(s) 34, 178
Bst4CI ACNGT 2 cut(s) 335, 425
Bst6I CTCTTC 2 cut(s) 342, 471
BstAFI CTTAAG 1 cut(s) 47
BstDEI CTNAG 3 cut(s) 78, 203, 322
BstF5I GGATG 5 cut(s) 262, 286, 415, 421, 439
BstKTI GATC 2 cut(s) 37, 181
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 34, 178
BstMWI GCNNNNNNNGC 4 cut(s) 51, 83, 92, 248
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 2 cut(s) 126, 336
BtsCI GGATG 5 cut(s) 262, 286, 415, 421, 439
BtsIMutI CAGTG 3 cut(s) 174, 340, 430
BveI ACCTGC 1 cut(s) 233
CseI GACGC 1 cut(s) 257
CviJI RGCY 4 cut(s) 45, 77, 220, 374
CviKI_1 RGCY 4 cut(s) 45, 77, 220, 374
DdeI CTNAG 3 cut(s) 78, 203, 322
DpnI GATC 2 cut(s) 36, 180
DpnII GATC 2 cut(s) 34, 178
Eam1104I CTCTTC 2 cut(s) 342, 471
EarI CTCTTC 2 cut(s) 342, 471
Eco32I GATATC 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 163
EcoRV GATATC 1 cut(s) 7
FaiI YATR 1 cut(s) 384
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 5 cut(s) 269, 293, 422, 428, 446
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
HgaI GACGC 1 cut(s) 257
HinfI GANTC 4 cut(s) 65, 88, 320, 353
HphI GGTGA 2 cut(s) 129, 257
Hpy188I TCNGA 5 cut(s) 162, 183, 199, 325, 358
Hpy188III TCNNGA 1 cut(s) 38
Hpy99I CGWCG 1 cut(s) 452
HpyAV CCTTC 1 cut(s) 504
HpyCH4III ACNGT 2 cut(s) 335, 425
HpyCH4V TGCA 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 83, 92, 248
HpyF3I CTNAG 3 cut(s) 78, 203, 322
Kzo9I GATC 2 cut(s) 34, 178
LguI GCTCTTC 1 cut(s) 471
LpnPI CCDG 5 cut(s) 44, 110, 228, 234, 363
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 2 cut(s) 214, 229
MaeIII GTNAC 4 cut(s) 245, 425, 443, 489
MalI GATC 2 cut(s) 36, 180
MboI GATC 2 cut(s) 34, 178
MboII GAAGA 8 cut(s) 126, 317, 338, 341, 359, 473, 479, 488
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 2 cut(s) 163, 482
MlyI GAGTC 1 cut(s) 314
MseI TTAA 1 cut(s) 48
MspCI CTTAAG 1 cut(s) 47
MwoI GCNNNNNNNGC 4 cut(s) 51, 83, 92, 248
NdeII GATC 2 cut(s) 34, 178
NmuCI GTSAC 3 cut(s) 245, 425, 443
PaqCI CACCTGC 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 471
PcsI WCGNNNNNNNCGW 2 cut(s) 426, 453
PfeI GAWTC 3 cut(s) 65, 88, 353
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
SapI GCTCTTC 1 cut(s) 471
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 2 cut(s) 34, 178
SchI GAGTC 1 cut(s) 314
SduI GDGCHC 1 cut(s) 56
SetI ASST 5 cut(s) 142, 188, 247, 369, 496
SfaNI GCATC 2 cut(s) 214, 229
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 2 cut(s) 163, 482
TaaI ACNGT 2 cut(s) 335, 425
TaqI TCGA 1 cut(s) 39
TasI AATT 2 cut(s) 163, 482
TfiI GAWTC 3 cut(s) 65, 88, 353
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 3 cut(s) 174, 340, 430
TseFI GTSAC 3 cut(s) 245, 425, 443
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 3 cut(s) 245, 425, 443
TspDTI ATGAA 4 cut(s) 318, 360, 474, 480
TspRI CASTG 3 cut(s) 174, 340, 430
Vha464I CTTAAG 1 cut(s) 47
XapI RAATTY 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.