transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G06230 AT1G06230 AT1G06230 AT1G06230 |
| fragaria_vesca | FvH4_6g27070 FvH4_6g27070 FvH4_6g27070 FvH4_6g27070 FvH4_6g27070 |
| malus_domestica | MD09G1240500.v1.1 MD17G1233300.v1.1 |
| prunus_persica | Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 |
| pyrus_communis | pycom09g15900 pycom17g23630 |
| rosa_chinensis | RchiOBHm_Chr2g0129031 |
| rosa_laevigata | RLG00000019045 |
| rosa_multiflora | Rmu_sc0009747.1_g000004 |
| rosa_rugosa | Rorug02G0283500 Rorug02G0283500 |
| rosa_samantha | Rh2AG336000 Rh2BG344000 Rh2CG322900 Rh2DG360600 |
| rosa_wichuraiana | Rw2G027240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1766 |
| AarI | CACCTGC | 2 cut(s) | 839, 1063 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 481 |
| Acc36I | ACCTGC | 3 cut(s) | 580, 839, 1063 |
| Acc65I | GGTACC | 1 cut(s) | 1280 |
| AccB1I | GGYRCC | 2 cut(s) | 1280, 1525 |
| AccBSI | CCGCTC | 3 cut(s) | 511, 616, 1643 |
| AclWI | GGATC | 3 cut(s) | 266, 1595, 1661 |
| AcsI | RAATTY | 5 cut(s) | 451, 496, 628, 1328, 1777 |
| AcuI | CTGAAG | 2 cut(s) | 657, 1719 |
| AfaI | GTAC | 2 cut(s) | 1282, 1313 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 20, 1387, 1997, 1998, 2031, 2032 |
| AgsI | TTSAA | 7 cut(s) | 91, 696, 1150, 1811, 1984, 2020, 2031 |
| AjnI | CCWGG | 4 cut(s) | 911, 1275, 1381, 1956 |
| Alw21I | GWGCWC | 1 cut(s) | 747 |
| Alw26I | GTCTC | 4 cut(s) | 1087, 1323, 1339, 1832 |
| AlwI | GGATC | 3 cut(s) | 266, 1595, 1661 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1931 |
| Ama87I | CYCGRG | 1 cut(s) | 900 |
| AoxI | GGCC | 6 cut(s) | 11, 94, 461, 914, 1440, 1959 |
| ApeKI | GCWGC | 8 cut(s) | 185, 288, 530, 533, 584, 1223, 1948, 1970 |
| ApoI | RAATTY | 5 cut(s) | 451, 496, 628, 1328, 1777 |
| AseI | ATTAAT | 1 cut(s) | 684 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1007 |
| Asp718I | GGTACC | 1 cut(s) | 1280 |
| AspA2I | CCTAGG | 1 cut(s) | 1631 |
| AspS9I | GGNCC | 6 cut(s) | 11, 1273, 1440, 1635, 1953, 1960 |
| AsuHPI | GGTGA | 3 cut(s) | 41, 624, 778 |
| AsuII | TTCGAA | 1 cut(s) | 724 |
| AvaI | CYCGRG | 1 cut(s) | 900 |
| AvaII | GGWCC | 3 cut(s) | 1273, 1635, 1953 |
| AvrII | CCTAGG | 1 cut(s) | 1631 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 253, 286, 1264, 1297 |
| BanI | GGYRCC | 2 cut(s) | 1280, 1525 |
| BanII | GRGCYC | 1 cut(s) | 747 |
| Bbv12I | GWGCWC | 1 cut(s) | 747 |
| BbvCI | CCTCAGC | 2 cut(s) | 860, 1472 |
| BbvI | GCAGC | 8 cut(s) | 172, 300, 517, 520, 596, 1210, 1960, 1982 |
| BccI | CCATC | 7 cut(s) | 26, 485, 827, 1126, 1292, 1451, 1800 |
| BciT130I | CCWGG | 4 cut(s) | 913, 1277, 1383, 1958 |
| BcoDI | GTCTC | 4 cut(s) | 1087, 1323, 1339, 1832 |
| BfaI | CTAG | 1 cut(s) | 1632 |
| BfmI | CTRYAG | 2 cut(s) | 15, 888 |
| BfuAI | ACCTGC | 3 cut(s) | 580, 839, 1063 |
| BlnI | CCTAGG | 1 cut(s) | 1631 |
| BlpI | GCTNAGC | 2 cut(s) | 1709, 1932 |
| Bme1390I | CCNGG | 4 cut(s) | 913, 1277, 1383, 1958 |
| Bme18I | GGWCC | 3 cut(s) | 1273, 1635, 1953 |
| BmeT110I | CYCGRG | 1 cut(s) | 900 |
| BmgT120I | GGNCC | 6 cut(s) | 11, 1273, 1440, 1635, 1953, 1960 |
| BmiI | GGNNCC | 7 cut(s) | 12, 37, 1282, 1527, 1637, 1955, 1962 |
| BmrFI | CCNGG | 4 cut(s) | 913, 1277, 1383, 1958 |
| BmrI | ACTGGG | 1 cut(s) | 1958 |
| BmsI | GCATC | 5 cut(s) | 321, 931, 1210, 1273, 1738 |
| BmuI | ACTGGG | 1 cut(s) | 1958 |
| BpmI | CTGGAG | 1 cut(s) | 1706 |
| Bpu10I | CCTNAGC | 3 cut(s) | 181, 860, 1472 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1709, 1932 |
| Bpu14I | TTCGAA | 1 cut(s) | 724 |
| BpuEI | CTTGAG | 4 cut(s) | 83, 571, 755, 1190 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1461 |
| BsaI | GGTCTC | 1 cut(s) | 1832 |
| BsaJI | CCNNGG | 7 cut(s) | 996, 1038, 1276, 1381, 1382, 1631, 1956 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 448, 478, 1612, 1627, 1642, 1657 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 20, 1387, 1997, 1998, 2031, 2032 |
| Bse118I | RCCGGY | 2 cut(s) | 561, 658 |
| Bse1I | ACTGG | 2 cut(s) | 1006, 1964 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1461 |
| BseBI | CCWGG | 4 cut(s) | 913, 1277, 1383, 1958 |
| BseDI | CCNNGG | 7 cut(s) | 996, 1038, 1276, 1381, 1382, 1631, 1956 |
| BseGI | GGATG | 6 cut(s) | 496, 1137, 1264, 1345, 1396, 1753 |
| BseJI | GATNNNNATC | 1 cut(s) | 1461 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 20, 1387, 1997, 1998, 2031, 2032 |
| BseNI | ACTGG | 2 cut(s) | 1006, 1964 |
| BseRI | GAGGAG | 2 cut(s) | 1119, 1786 |
| BseXI | GCAGC | 8 cut(s) | 172, 300, 517, 520, 596, 1210, 1960, 1982 |
| BsgI | GTGCAG | 1 cut(s) | 867 |
| BshFI | GGCC | 6 cut(s) | 13, 96, 463, 916, 1442, 1961 |
| BshNI | GGYRCC | 2 cut(s) | 1280, 1525 |
| BsiHKAI | GWGCWC | 1 cut(s) | 747 |
| BsiHKCI | CYCGRG | 1 cut(s) | 900 |
| BsiSI | CCGG | 3 cut(s) | 467, 562, 659 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 20, 1387, 1997, 1998, 2031, 2032 |
| BsmAI | GTCTC | 4 cut(s) | 1087, 1323, 1339, 1832 |
| BsnI | GGCC | 6 cut(s) | 13, 96, 463, 916, 1442, 1961 |
| Bso31I | GGTCTC | 1 cut(s) | 1832 |
| BsoBI | CYCGRG | 1 cut(s) | 900 |
| Bsp119I | TTCGAA | 1 cut(s) | 724 |
| Bsp1286I | GDGCHC | 1 cut(s) | 747 |
| Bsp143I | GATC | 3 cut(s) | 258, 1600, 1666 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1709, 1932 |
| BspANI | GGCC | 6 cut(s) | 13, 96, 463, 916, 1442, 1961 |
| BspHI | TCATGA | 1 cut(s) | 1795 |
| BspLI | GGNNCC | 7 cut(s) | 12, 37, 1282, 1527, 1637, 1955, 1962 |
| BspMI | ACCTGC | 3 cut(s) | 580, 839, 1063 |
| BspPI | GGATC | 3 cut(s) | 266, 1595, 1661 |
| BspT104I | TTCGAA | 1 cut(s) | 724 |
| BspT107I | GGYRCC | 2 cut(s) | 1280, 1525 |
| BspTNI | GGTCTC | 1 cut(s) | 1832 |
| BsrBI | CCGCTC | 3 cut(s) | 511, 616, 1643 |
| BsrFI | RCCGGY | 2 cut(s) | 561, 658 |
| BsrI | ACTGG | 2 cut(s) | 1006, 1964 |
| BssAI | RCCGGY | 2 cut(s) | 561, 658 |
| BssECI | CCNNGG | 7 cut(s) | 996, 1038, 1276, 1381, 1382, 1631, 1956 |
| BssMI | GATC | 3 cut(s) | 258, 1600, 1666 |
| BssT1I | CCWWGG | 3 cut(s) | 996, 1038, 1631 |
| Bst2UI | CCWGG | 4 cut(s) | 913, 1277, 1383, 1958 |
| Bst4CI | ACNGT | 3 cut(s) | 19, 269, 522 |
| Bst6I | CTCTTC | 6 cut(s) | 633, 764, 980, 1085, 1874, 2021 |
| BstBI | TTCGAA | 1 cut(s) | 724 |
| BstC8I | GCNNGC | 3 cut(s) | 660, 1035, 1917 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 18 |
| BstF5I | GGATG | 6 cut(s) | 496, 1137, 1264, 1345, 1396, 1753 |
| BstKTI | GATC | 3 cut(s) | 261, 1603, 1669 |
| BstMAI | GTCTC | 4 cut(s) | 1087, 1323, 1339, 1832 |
| BstMBI | GATC | 3 cut(s) | 258, 1600, 1666 |
| BstNI | CCWGG | 4 cut(s) | 913, 1277, 1383, 1958 |
| BstSCI | CCNGG | 4 cut(s) | 911, 1275, 1381, 1956 |
| BstSFI | CTRYAG | 2 cut(s) | 15, 888 |
| BstV1I | GCAGC | 8 cut(s) | 172, 300, 517, 520, 596, 1210, 1960, 1982 |
| BstX2I | RGATCY | 1 cut(s) | 1666 |
| BstYI | RGATCY | 1 cut(s) | 1666 |
| BsuRI | GGCC | 6 cut(s) | 13, 96, 463, 916, 1442, 1961 |
| BtsCI | GGATG | 6 cut(s) | 496, 1137, 1264, 1345, 1396, 1753 |
| BtsI | GCAGTG | 2 cut(s) | 600, 1532 |
| BtsIMutI | CAGTG | 3 cut(s) | 600, 831, 1532 |
| BveI | ACCTGC | 3 cut(s) | 580, 839, 1063 |
| Cac8I | GCNNGC | 3 cut(s) | 660, 1035, 1917 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1931 |
| CciI | TCATGA | 1 cut(s) | 1795 |
| Cfr10I | RCCGGY | 2 cut(s) | 561, 658 |
| Cfr13I | GGNCC | 6 cut(s) | 11, 1273, 1440, 1635, 1953, 1960 |
| CseI | GACGC | 1 cut(s) | 146 |
| Csp6I | GTAC | 2 cut(s) | 1281, 1312 |
| CviAII | CATG | 7 cut(s) | 818, 1097, 1193, 1366, 1397, 1618, 1796 |
| CviQI | GTAC | 2 cut(s) | 1281, 1312 |
| DpnI | GATC | 3 cut(s) | 260, 1602, 1668 |
| DpnII | GATC | 3 cut(s) | 258, 1600, 1666 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 481 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 481 |
| Eam1104I | CTCTTC | 6 cut(s) | 633, 764, 980, 1085, 1874, 2021 |
| EarI | CTCTTC | 6 cut(s) | 633, 764, 980, 1085, 1874, 2021 |
| EciI | GGCGGA | 1 cut(s) | 184 |
| Ecl136II | GAGCTC | 1 cut(s) | 745 |
| Eco130I | CCWWGG | 3 cut(s) | 996, 1038, 1631 |
| Eco147I | AGGCCT | 2 cut(s) | 96, 916 |
| Eco24I | GRGCYC | 1 cut(s) | 747 |
| Eco31I | GGTCTC | 1 cut(s) | 1832 |
| Eco47I | GGWCC | 3 cut(s) | 1273, 1635, 1953 |
| Eco53kI | GAGCTC | 1 cut(s) | 745 |
| Eco57I | CTGAAG | 2 cut(s) | 657, 1719 |
| Eco88I | CYCGRG | 1 cut(s) | 900 |
| EcoICRI | GAGCTC | 1 cut(s) | 745 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 18 |
| EcoO109I | RGGNCCY | 3 cut(s) | 11, 1635, 1960 |
| EcoRI | GAATTC | 3 cut(s) | 451, 628, 1777 |
| EcoRII | CCWGG | 4 cut(s) | 911, 1275, 1381, 1956 |
| EcoT14I | CCWWGG | 3 cut(s) | 996, 1038, 1631 |
| EcoT38I | GRGCYC | 1 cut(s) | 747 |
| ErhI | CCWWGG | 3 cut(s) | 996, 1038, 1631 |
| FaeI | CATG | 7 cut(s) | 821, 1100, 1196, 1369, 1400, 1621, 1799 |
| FatI | CATG | 7 cut(s) | 817, 1096, 1192, 1365, 1396, 1617, 1795 |
| FauI | CCCGC | 5 cut(s) | 208, 214, 609, 708, 1648 |
| FokI | GGATG | 6 cut(s) | 503, 1144, 1251, 1352, 1403, 1760 |
| FriOI | GRGCYC | 1 cut(s) | 747 |
| FspBI | CTAG | 1 cut(s) | 1632 |
| GsuI | CTGGAG | 1 cut(s) | 1706 |
| HaeIII | GGCC | 6 cut(s) | 13, 96, 463, 916, 1442, 1961 |
| HapII | CCGG | 3 cut(s) | 467, 562, 659 |
| HgaI | GACGC | 1 cut(s) | 146 |
| Hin1II | CATG | 7 cut(s) | 821, 1100, 1196, 1369, 1400, 1621, 1799 |
| HincII | GTYRAC | 1 cut(s) | 118 |
| HindII | GTYRAC | 1 cut(s) | 118 |
| HindIII | AAGCTT | 3 cut(s) | 84, 731, 1229 |
| HinfI | GANTC | 5 cut(s) | 421, 545, 1048, 1451, 1580 |
| HpaII | CCGG | 3 cut(s) | 467, 562, 659 |
| HphI | GGTGA | 3 cut(s) | 41, 624, 778 |
| Hpy166II | GTNNAC | 5 cut(s) | 57, 118, 871, 1730, 1816 |
| Hpy188III | TCNNGA | 8 cut(s) | 100, 902, 1150, 1419, 1466, 1550, 1723, 1796 |
| Hpy8I | GTNNAC | 5 cut(s) | 57, 118, 871, 1730, 1816 |
| Hpy99I | CGWCG | 1 cut(s) | 140 |
| HpyCH4III | ACNGT | 3 cut(s) | 19, 269, 522 |
| HpyCH4V | TGCA | 6 cut(s) | 848, 922, 1158, 1240, 1915, 1970 |
| Hsp92II | CATG | 7 cut(s) | 821, 1100, 1196, 1369, 1400, 1621, 1799 |
| KpnI | GGTACC | 1 cut(s) | 1284 |
| KroI | GCCGGC | 1 cut(s) | 658 |
| KroNI | GCCGGC | 1 cut(s) | 660 |
| Kzo9I | GATC | 3 cut(s) | 258, 1600, 1666 |
| LmnI | GCTCC | 4 cut(s) | 35, 718, 1648, 1849 |
| Lsp1109I | GCAGC | 8 cut(s) | 172, 300, 517, 520, 596, 1210, 1960, 1982 |
| LweI | GCATC | 5 cut(s) | 321, 931, 1210, 1273, 1738 |
| MaeI | CTAG | 1 cut(s) | 1632 |
| MaeIII | GTNAC | 4 cut(s) | 809, 1064, 1592, 1864 |
| MalI | GATC | 3 cut(s) | 260, 1602, 1668 |
| MbiI | CCGCTC | 3 cut(s) | 511, 616, 1643 |
| MboI | GATC | 3 cut(s) | 258, 1600, 1666 |
| MflI | RGATCY | 1 cut(s) | 1666 |
| MhlI | GDGCHC | 1 cut(s) | 747 |
| MlyI | GAGTC | 4 cut(s) | 430, 539, 1460, 1589 |
| MmeI | TCCRAC | 3 cut(s) | 605, 924, 1529 |
| MroNI | GCCGGC | 1 cut(s) | 658 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1007 |
| MseI | TTAA | 3 cut(s) | 684, 1206, 1497 |
| MslI | CAYNNNNRTG | 4 cut(s) | 816, 1191, 1797, 1800 |
| MspA1I | CMGCKG | 3 cut(s) | 243, 928, 1951 |
| MspI | CCGG | 3 cut(s) | 467, 562, 659 |
| MspR9I | CCNGG | 4 cut(s) | 913, 1277, 1383, 1958 |
| MvaI | CCWGG | 4 cut(s) | 913, 1277, 1383, 1958 |
| NaeI | GCCGGC | 1 cut(s) | 660 |
| NdeII | GATC | 3 cut(s) | 258, 1600, 1666 |
| NgoMIV | GCCGGC | 1 cut(s) | 658 |
| NlaIII | CATG | 7 cut(s) | 821, 1100, 1196, 1369, 1400, 1621, 1799 |
| NlaIV | GGNNCC | 7 cut(s) | 12, 37, 1282, 1527, 1637, 1955, 1962 |
| NmeAIII | GCCGAG | 1 cut(s) | 439 |
| NmuCI | GTSAC | 2 cut(s) | 809, 1592 |
| NspV | TTCGAA | 1 cut(s) | 724 |
| PaeR7I | CTCGAG | 1 cut(s) | 900 |
| PagI | TCATGA | 1 cut(s) | 1795 |
| PaqCI | CACCTGC | 2 cut(s) | 839, 1063 |
| PasI | CCCWGGG | 1 cut(s) | 1382 |
| PceI | AGGCCT | 2 cut(s) | 96, 916 |
| PdiI | GCCGGC | 1 cut(s) | 660 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1007 |
| PfeI | GAWTC | 1 cut(s) | 1048 |
| PleI | GAGTC | 4 cut(s) | 429, 539, 1459, 1588 |
| PpsI | GAGTC | 4 cut(s) | 429, 539, 1459, 1588 |
| PpuMI | RGGWCCY | 1 cut(s) | 1635 |
| PshBI | ATTAAT | 1 cut(s) | 684 |
| PsiI | TTATAA | 1 cut(s) | 1766 |
| Psp124BI | GAGCTC | 1 cut(s) | 747 |
| Psp5II | RGGWCCY | 1 cut(s) | 1635 |
| Psp6I | CCWGG | 4 cut(s) | 911, 1275, 1381, 1956 |
| PspGI | CCWGG | 4 cut(s) | 911, 1275, 1381, 1956 |
| PspN4I | GGNNCC | 7 cut(s) | 12, 37, 1282, 1527, 1637, 1955, 1962 |
| PspPI | GGNCC | 6 cut(s) | 11, 1273, 1440, 1635, 1953, 1960 |
| PspPPI | RGGWCCY | 1 cut(s) | 1635 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1931 |
| PsuI | RGATCY | 1 cut(s) | 1666 |
| PvuII | CAGCTG | 1 cut(s) | 928 |
| RsaI | GTAC | 2 cut(s) | 1282, 1313 |
| RsaNI | GTAC | 2 cut(s) | 1281, 1312 |
| RseI | CAYNNNNRTG | 4 cut(s) | 816, 1191, 1797, 1800 |
| SacI | GAGCTC | 1 cut(s) | 747 |
| SaqAI | TTAA | 3 cut(s) | 684, 1206, 1497 |
| Sau3AI | GATC | 3 cut(s) | 258, 1600, 1666 |
| Sau96I | GGNCC | 6 cut(s) | 11, 1273, 1440, 1635, 1953, 1960 |
| SchI | GAGTC | 4 cut(s) | 430, 539, 1460, 1589 |
| ScrFI | CCNGG | 4 cut(s) | 913, 1277, 1383, 1958 |
| SduI | GDGCHC | 1 cut(s) | 747 |
| SfaNI | GCATC | 5 cut(s) | 321, 931, 1210, 1273, 1738 |
| SfcI | CTRYAG | 2 cut(s) | 15, 888 |
| Sfr274I | CTCGAG | 1 cut(s) | 900 |
| SfuI | TTCGAA | 1 cut(s) | 724 |
| SinI | GGWCC | 3 cut(s) | 1273, 1635, 1953 |
| SlaI | CTCGAG | 1 cut(s) | 900 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 816, 1191, 1797, 1800 |
| SmlI | CTYRAG | 5 cut(s) | 98, 550, 734, 900, 1169 |
| SmoI | CTYRAG | 5 cut(s) | 98, 550, 734, 900, 1169 |
| SseBI | AGGCCT | 2 cut(s) | 96, 916 |
| SspI | AATATT | 1 cut(s) | 1425 |
| SspMI | CTAG | 1 cut(s) | 1632 |
| SstI | GAGCTC | 1 cut(s) | 747 |
| StuI | AGGCCT | 2 cut(s) | 96, 916 |
| StyD4I | CCNGG | 4 cut(s) | 911, 1275, 1381, 1956 |
| StyI | CCWWGG | 3 cut(s) | 996, 1038, 1631 |
| TaaI | ACNGT | 3 cut(s) | 19, 269, 522 |
| TaqI | TCGA | 9 cut(s) | 79, 261, 701, 724, 747, 901, 1076, 1082, 1292 |
| TauI | GCSGC | 4 cut(s) | 224, 246, 511, 578 |
| TfiI | GAWTC | 1 cut(s) | 1048 |
| Tru1I | TTAA | 3 cut(s) | 684, 1206, 1497 |
| Tru9I | TTAA | 3 cut(s) | 684, 1206, 1497 |
| TscAI | CASTG | 3 cut(s) | 600, 831, 1539 |
| TseFI | GTSAC | 2 cut(s) | 809, 1592 |
| TseI | GCWGC | 8 cut(s) | 185, 288, 530, 533, 584, 1223, 1948, 1970 |
| Tsp45I | GTSAC | 2 cut(s) | 809, 1592 |
| TspDTI | ATGAA | 5 cut(s) | 1196, 1224, 1385, 1707, 1818 |
| TspGWI | ACGGA | 2 cut(s) | 74, 928 |
| TspRI | CASTG | 3 cut(s) | 600, 831, 1539 |
| VpaK11BI | GGWCC | 3 cut(s) | 1273, 1635, 1953 |
| VspI | ATTAAT | 1 cut(s) | 684 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 18 |
| XapI | RAATTY | 5 cut(s) | 451, 496, 628, 1328, 1777 |
| XhoI | CTCGAG | 1 cut(s) | 900 |
| XmaJI | CCTAGG | 1 cut(s) | 1631 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1007 |
| XspI | CTAG | 1 cut(s) | 1632 |