Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004750

Physical Location & Seq

Genomic Coordinates Forward (+)

26178651 .. 26183495

Gene Structure 4845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGAGTAGTTTGATCGATCAATGGGAACCAGTGTCACGTGAATCTGTGAAGACACCACTAGAGGTTTACGAGGAATTGCAAGAACAAGGATACCTTGTTGACTATGAACGTGTTCCTATAACTGATGAAAAGTCACCTAAGGAGCTGGATTTCGATATTTTGGTTCATAAAATTTCTCAAGCTGACATAAATGCAGAAATAATTTTTAACTGTCAAATGGGACGTGGGCGAACTACAACAGGAATGGTGATTGCAACTTTGATATACCTCAACCGTATAGGAGCTTCCGGTATTCCAAGAACCAATTCAATTGGAAAAATTTCTGAATCCAGTGAAATTGTTGGTGACAATTTTCCAAGCTCAGAAGATGCGATTCGTAGAGGTGAATATGCTGTCATAAGGAGCTTGATTCGGGTATTAGAGGGTGGTGTTGAAGGCAAGAGACAAGTGGATAAAGTCATTGACAAGTGTGCCTCTATGCAGAACTTACGTGAAGCAATTGCTACTTATCGCAATAGTATTATGCGCCAGCCAGATGAGATGAAAAGGGAGGCATCACTTTCATTTTTCATGGAGTATTTGGAACGATACTACTTCCTTATATGCTTTACCGTGTACATTCATTCAGAGGGAGCAGCCCTCCGTTCTAGTTCCTGTGATTATAGTAGTTTTGCTGATTGGATGAAAGCTAGGCCTGAACTATATAGTATTATTCGCAGGCTTCTGAGAAGAGATCCAATGGGTGCACTTGGATATGCAAGTTTGAAGCCATCTTTAAAGAAGATTGCTGAATCTGCTGATGGTCGGCCTTGTGAGATGGGTGCAGTTGCTGCCTTGAGAAAGGGCGAGGTTCTTGGTAGTCAAACAGTTCTGAAAAGTGACCACTGTCCTGGTTGTCAAAACCAAAATTTACCAGAAAGAGTGGATGGTGCCCCTAATTTCCGAGAGGTCCCTGGATTTTCAGTTTATGGAGTTGCAAATCCAACAATTGATGGTATATGGTCTGTCATCCACAGGATTGGTAGCTCCAAAGATGGCCGCCCAGTTTTTTGGCATAATATGAGAGAAGAACCTGTTATTTATATCAACGGAAAACCATTTGTACTTCGCGAGGTTGAAAGGCCTTACAAAAATATGCTCGAGTACACGGGTATTGATCGTGAGAGGGTGGAGAGGATGGAAGCTCGGTTAAAAGAAGATATCTTGCCAACAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTPlike_phytase

Protein Analysis

406

Amino Acids

45.93

Weight (kDa)

5.93

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTPlike_phytase	PF14566	2 - 88	1.2e-27	Inositol hexakisphosphate
Tc-R-P	PF22785	5 - 87	3.9e-06	Polymorphic toxin system, DSP-PTPase phosphatase
PTPlike_phytase	PF14566	352 - 402	4.3e-18	Inositol hexakisphosphate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62010 AT3G62010
fragaria_vesca	FvH4_1g26030 FvH4_1g26030 FvH4_1g26030 FvH4_1g26030 FvH4_1g26030 FvH4_1g26030 FvH4_1g26030 FvH4_1g26030
malus_domestica	MD09G1291900.v1.1 MD09G1292000.v1.1 MD17G1285800.v1.1
prunus_persica	Prupe.3G000300_v2.0.a1 Prupe.3G000300_v2.0.a1 Prupe.3G000300_v2.0.a1
pyrus_communis	pycom09g20000 pycom17g28150 pycom17g28160
rosa_chinensis	RchiOBHm_Chr3g0485491
rosa_laevigata	RLG00000023148 RLG00000023149
rosa_multiflora	Rmu_sc0004711.1_g000027
rosa_roxburghii	Rroxscaffold_6G00397000
rosa_rugosa	Rorug03G0218500
rosa_samantha	Rh3AG268000 Rh3BG303500 Rh3CG301600 Rh3DG298400
rosa_wichuraiana	Rw3G023690 Rw3G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	929
AccII	CGCG	1 cut(s)	1110
AciI	CCGC	1 cut(s)	1039
AclWI	GGATC	1 cut(s)	728
AcoI	YGGCCR	1 cut(s)	1036
AcsI	RAATTY	3 cut(s)	171, 318, 907
AcvI	CACGTG	1 cut(s)	38
AfaI	GTAC	3 cut(s)	617, 1104, 1145
AflIII	ACRYGT	1 cut(s)	109
AgsI	TTSAA	4 cut(s)	309, 434, 766, 1118
AjiI	CACGTC	1 cut(s)	224
AjnI	CCWGG	2 cut(s)	889, 952
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
AluBI	AGCT	8 cut(s)	145, 182, 284, 360, 405, 689, 1026, 1184
AluI	AGCT	8 cut(s)	145, 182, 284, 360, 405, 689, 1026, 1184
Alw21I	GWGCWC	1 cut(s)	748
Alw26I	GTCTC	1 cut(s)	436
Alw44I	GTGCAC	1 cut(s)	744
AlwI	GGATC	1 cut(s)	728
AlwNI	CAGNNNCTG	1 cut(s)	830
Ama87I	CYCGRG	1 cut(s)	1139
AoxI	GGCC	4 cut(s)	692, 806, 1036, 1121
ApaLI	GTGCAC	1 cut(s)	744
ApeKI	GCWGC	2 cut(s)	635, 830
ApoI	RAATTY	3 cut(s)	171, 318, 907
Asp700I	GAANNNNTTC	3 cut(s)	111, 304, 319
AspLEI	GCGC	1 cut(s)	528
AspS9I	GGNCC	1 cut(s)	949
AsuHPI	GGTGA	4 cut(s)	126, 259, 356, 395
AvaI	CYCGRG	1 cut(s)	1139
AvaII	GGWCC	1 cut(s)	949
AxyI	CCTNAGG	1 cut(s)	138
BaeGI	GKGCMC	2 cut(s)	748, 934
BanI	GGYRCC	1 cut(s)	929
BarI	GAAGNNNNNNTAC	2 cut(s)	268, 300
BbrPI	CACGTG	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	748
BbvI	GCAGC	2 cut(s)	647, 817
BccI	CCATC	7 cut(s)	778, 794, 811, 920, 986, 1028, 1171
BciT130I	CCWGG	2 cut(s)	891, 954
BciVI	GTATCC	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	3 cut(s)	59, 648, 690
BfuI	GTATCC	1 cut(s)	83
BisI	GCNGC	3 cut(s)	636, 831, 1039
BlsI	GCNGC	3 cut(s)	637, 832, 1040
Bme1390I	CCNGG	2 cut(s)	891, 954
Bme18I	GGWCC	1 cut(s)	949
BmeT110I	CYCGRG	1 cut(s)	1139
BmgBI	CACGTC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	949
BmiI	GGNNCC	3 cut(s)	27, 931, 951
BmrFI	CCNGG	2 cut(s)	891, 954
BmrI	ACTGGG	1 cut(s)	1037
BmsI	GCATC	2 cut(s)	358, 563
BmuI	ACTGGG	1 cut(s)	1037
BoxI	GACNNNNGTC	1 cut(s)	885
BpiI	GAAGAC	1 cut(s)	56
BplI	GAGNNNNNCTC	2 cut(s)	624, 656
BpuEI	CTTGAG	2 cut(s)	162, 856
Bsa29I	ATCGAT	1 cut(s)	15
BsaAI	YACGTR	2 cut(s)	38, 491
BsaJI	CCNNGG	1 cut(s)	952
BsaWI	WCCGGW	1 cut(s)	287
Bse1I	ACTGG	3 cut(s)	29, 330, 1043
Bse21I	CCTNAGG	1 cut(s)	138
BseBI	CCWGG	2 cut(s)	891, 954
BseCI	ATCGAT	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	952
BseGI	GGATG	4 cut(s)	687, 931, 1008, 1182
BseMII	CTCAG	2 cut(s)	375, 716
BseNI	ACTGG	3 cut(s)	29, 330, 1043
BseSI	GKGCMC	2 cut(s)	748, 934
BseXI	GCAGC	2 cut(s)	647, 817
BsgI	GTGCAG	1 cut(s)	843
Bsh1236I	CGCG	1 cut(s)	1110
BshFI	GGCC	4 cut(s)	694, 808, 1038, 1123
BshNI	GGYRCC	1 cut(s)	929
BshVI	ATCGAT	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	748
BsiHKCI	CYCGRG	1 cut(s)	1139
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	2 cut(s)	234, 935
BsmAI	GTCTC	1 cut(s)	436
BsmFI	GGGAC	2 cut(s)	234, 935
BsnI	GGCC	4 cut(s)	694, 808, 1038, 1123
BsoBI	CYCGRG	1 cut(s)	1139
Bsp1286I	GDGCHC	2 cut(s)	748, 934
Bsp1407I	TGTACA	1 cut(s)	615
Bsp143I	GATC	4 cut(s)	12, 16, 733, 1156
Bsp68I	TCGCGA	1 cut(s)	1110
BspACI	CCGC	1 cut(s)	1039
BspANI	GGCC	4 cut(s)	694, 808, 1038, 1123
BspCNI	CTCAG	2 cut(s)	374, 717
BspDI	ATCGAT	1 cut(s)	15
BspFNI	CGCG	1 cut(s)	1110
BspLI	GGNNCC	3 cut(s)	27, 931, 951
BspPI	GGATC	1 cut(s)	728
BspT107I	GGYRCC	1 cut(s)	929
BsrGI	TGTACA	1 cut(s)	615
BsrI	ACTGG	3 cut(s)	29, 330, 1043
BssECI	CCNNGG	1 cut(s)	952
BssMI	GATC	4 cut(s)	12, 16, 733, 1156
Bst2UI	CCWGG	2 cut(s)	891, 954
Bst4CI	ACNGT	5 cut(s)	212, 275, 613, 868, 887
Bst6I	CTCTTC	1 cut(s)	724
BstAPI	GCANNNNNTGC	1 cut(s)	830
BstAUI	TGTACA	1 cut(s)	615
BstBAI	YACGTR	2 cut(s)	38, 491
BstC8I	GCNNGC	2 cut(s)	530, 719
BstDEI	CTNAG	3 cut(s)	138, 361, 725
BstF5I	GGATG	4 cut(s)	687, 931, 1008, 1182
BstFNI	CGCG	1 cut(s)	1110
BstHHI	GCGC	1 cut(s)	528
BstKTI	GATC	4 cut(s)	15, 19, 736, 1159
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	4 cut(s)	12, 16, 733, 1156
BstMWI	GCNNNNNNNGC	2 cut(s)	794, 830
BstNI	CCWGG	2 cut(s)	891, 954
BstPAI	GACNNNNGTC	1 cut(s)	885
BstSCI	CCNGG	2 cut(s)	889, 952
BstSLI	GKGCMC	2 cut(s)	748, 934
BstUI	CGCG	1 cut(s)	1110
BstV1I	GCAGC	2 cut(s)	647, 817
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	733
BstXI	CCANNNNNNTGG	3 cut(s)	890, 1019, 1050
BstYI	RGATCY	1 cut(s)	733
Bsu15I	ATCGAT	1 cut(s)	15
Bsu36I	CCTNAGG	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	83
BsuRI	GGCC	4 cut(s)	694, 808, 1038, 1123
BsuTUI	ATCGAT	1 cut(s)	15
BtrI	CACGTC	1 cut(s)	224
BtsCI	GGATG	4 cut(s)	687, 931, 1008, 1182
BtsIMutI	CAGTG	3 cut(s)	36, 337, 883
BtuMI	TCGCGA	1 cut(s)	1110
Cac8I	GCNNGC	2 cut(s)	530, 719
CaiI	CAGNNNCTG	1 cut(s)	830
CfoI	GCGC	1 cut(s)	528
Cfr13I	GGNCC	1 cut(s)	949
ClaI	ATCGAT	1 cut(s)	15
Csp6I	GTAC	3 cut(s)	616, 1103, 1144
CviAII	CATG	1 cut(s)	571
CviQI	GTAC	3 cut(s)	616, 1103, 1144
DdeI	CTNAG	3 cut(s)	138, 361, 725
DpnI	GATC	4 cut(s)	14, 18, 735, 1158
DpnII	GATC	4 cut(s)	12, 16, 733, 1156
DraI	TTTAAA	1 cut(s)	777
EaeI	YGGCCR	1 cut(s)	1036
Eam1104I	CTCTTC	1 cut(s)	724
EarI	CTCTTC	1 cut(s)	724
Eco147I	AGGCCT	2 cut(s)	694, 1123
Eco32I	GATATC	1 cut(s)	1201
Eco47I	GGWCC	1 cut(s)	949
Eco72I	CACGTG	1 cut(s)	38
Eco81I	CCTNAGG	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	1139
EcoO109I	RGGNCCY	1 cut(s)	949
EcoRII	CCWGG	2 cut(s)	889, 952
EcoRV	GATATC	1 cut(s)	1201
FaeI	CATG	1 cut(s)	574
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FaqI	GGGAC	2 cut(s)	234, 935
FatI	CATG	1 cut(s)	570
Fnu4HI	GCNGC	3 cut(s)	636, 831, 1039
FokI	GGATG	4 cut(s)	694, 938, 995, 1189
Fsp4HI	GCNGC	3 cut(s)	636, 831, 1039
FspBI	CTAG	3 cut(s)	59, 648, 690
GlaI	GCGC	1 cut(s)	527
GluI	GCNGC	3 cut(s)	636, 831, 1039
HaeIII	GGCC	4 cut(s)	694, 808, 1038, 1123
HapII	CCGG	1 cut(s)	288
HhaI	GCGC	1 cut(s)	528
Hin1II	CATG	1 cut(s)	574
Hin6I	GCGC	1 cut(s)	526
HinP1I	GCGC	1 cut(s)	526
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	5 cut(s)	41, 326, 373, 409, 791
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	4 cut(s)	126, 259, 356, 395
Hpy166II	GTNNAC	5 cut(s)	67, 100, 616, 746, 1146
Hpy188I	TCNGA	6 cut(s)	325, 364, 628, 726, 873, 944
Hpy188III	TCNNGA	2 cut(s)	1109, 1160
Hpy8I	GTNNAC	5 cut(s)	67, 100, 616, 746, 1146
HpyAV	CCTTC	1 cut(s)	428
HpyCH4III	ACNGT	5 cut(s)	212, 275, 613, 868, 887
HpyCH4IV	ACGT	4 cut(s)	37, 109, 223, 490
HpyCH4V	TGCA	8 cut(s)	79, 194, 254, 481, 746, 758, 824, 977
HpyF10VI	GCNNNNNNNGC	2 cut(s)	794, 830
HpyF3I	CTNAG	3 cut(s)	138, 361, 725
HpySE526I	ACGT	4 cut(s)	37, 109, 223, 490
Hsp92II	CATG	1 cut(s)	574
HspAI	GCGC	1 cut(s)	526
Kzo9I	GATC	4 cut(s)	12, 16, 733, 1156
LmnI	GCTCC	5 cut(s)	142, 281, 402, 632, 1031
Lsp1109I	GCAGC	2 cut(s)	647, 817
LweI	GCATC	2 cut(s)	358, 563
MaeI	CTAG	3 cut(s)	59, 648, 690
MaeII	ACGT	4 cut(s)	37, 109, 223, 490
MaeIII	GTNAC	4 cut(s)	33, 132, 344, 878
MalI	GATC	4 cut(s)	14, 18, 735, 1158
MboI	GATC	4 cut(s)	12, 16, 733, 1156
MboII	GAAGA	6 cut(s)	61, 377, 741, 793, 1079, 1208
MfeI	CAATTG	3 cut(s)	309, 498, 987
MflI	RGATCY	1 cut(s)	733
MhlI	GDGCHC	2 cut(s)	748, 934
MmeI	TCCRAC	1 cut(s)	1007
MroXI	GAANNNNTTC	3 cut(s)	111, 304, 319
MseI	TTAA	3 cut(s)	207, 776, 1190
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	2 cut(s)	891, 954
MunI	CAATTG	3 cut(s)	309, 498, 987
MvaI	CCWGG	2 cut(s)	891, 954
MvnI	CGCG	1 cut(s)	1110
MwoI	GCNNNNNNNGC	2 cut(s)	794, 830
NdeII	GATC	4 cut(s)	12, 16, 733, 1156
NlaIII	CATG	1 cut(s)	574
NlaIV	GGNNCC	3 cut(s)	27, 931, 951
NmuCI	GTSAC	4 cut(s)	33, 132, 344, 878
NruI	TCGCGA	1 cut(s)	1110
PaeR7I	CTCGAG	1 cut(s)	1139
PceI	AGGCCT	2 cut(s)	694, 1123
PdmI	GAANNNNTTC	3 cut(s)	111, 304, 319
PfeI	GAWTC	5 cut(s)	41, 326, 373, 409, 791
PkrI	GCNGC	3 cut(s)	637, 832, 1040
PmaCI	CACGTG	1 cut(s)	38
PmlI	CACGTG	1 cut(s)	38
Ppu21I	YACGTR	2 cut(s)	38, 491
PpuMI	RGGWCCY	1 cut(s)	949
PshAI	GACNNNNGTC	1 cut(s)	885
Psp5II	RGGWCCY	1 cut(s)	949
Psp6I	CCWGG	2 cut(s)	889, 952
PspCI	CACGTG	1 cut(s)	38
PspGI	CCWGG	2 cut(s)	889, 952
PspN4I	GGNNCC	3 cut(s)	27, 931, 951
PspPI	GGNCC	1 cut(s)	949
PspPPI	RGGWCCY	1 cut(s)	949
PspXI	VCTCGAGB	1 cut(s)	1139
PstNI	CAGNNNCTG	1 cut(s)	830
PsuI	RGATCY	1 cut(s)	733
RruI	TCGCGA	1 cut(s)	1110
RsaI	GTAC	3 cut(s)	617, 1104, 1145
RsaNI	GTAC	3 cut(s)	616, 1103, 1144
SaqAI	TTAA	3 cut(s)	207, 776, 1190
SatI	GCNGC	3 cut(s)	636, 831, 1039
Sau3AI	GATC	4 cut(s)	12, 16, 733, 1156
Sau96I	GGNCC	1 cut(s)	949
ScrFI	CCNGG	2 cut(s)	891, 954
SduI	GDGCHC	2 cut(s)	748, 934
SfaNI	GCATC	2 cut(s)	358, 563
Sfr274I	CTCGAG	1 cut(s)	1139
SinI	GGWCC	1 cut(s)	949
SlaI	CTCGAG	1 cut(s)	1139
SmlI	CTYRAG	3 cut(s)	177, 835, 1139
SmoI	CTYRAG	3 cut(s)	177, 835, 1139
SseBI	AGGCCT	2 cut(s)	694, 1123
SsiI	CCGC	1 cut(s)	1039
SspMI	CTAG	3 cut(s)	59, 648, 690
StuI	AGGCCT	2 cut(s)	694, 1123
StyD4I	CCNGG	2 cut(s)	889, 952
TaaI	ACNGT	5 cut(s)	212, 275, 613, 868, 887
TaiI	ACGT	4 cut(s)	40, 112, 226, 493
TaqI	TCGA	3 cut(s)	15, 153, 1140
TatI	WGTACW	3 cut(s)	615, 1102, 1143
TauI	GCSGC	1 cut(s)	1041
TfiI	GAWTC	5 cut(s)	41, 326, 373, 409, 791
Tru1I	TTAA	3 cut(s)	207, 776, 1190
Tru9I	TTAA	3 cut(s)	207, 776, 1190
TscAI	CASTG	3 cut(s)	36, 337, 890
TseFI	GTSAC	4 cut(s)	33, 132, 344, 878
TseI	GCWGC	2 cut(s)	635, 830
Tsp45I	GTSAC	4 cut(s)	33, 132, 344, 878
TspDTI	ATGAA	8 cut(s)	120, 141, 155, 552, 557, 559, 611, 698
TspGWI	ACGGA	2 cut(s)	632, 1104
TspRI	CASTG	3 cut(s)	36, 337, 890
VneI	GTGCAC	1 cut(s)	744
VpaK11BI	GGWCC	1 cut(s)	949
XapI	RAATTY	3 cut(s)	171, 318, 907
XhoI	CTCGAG	1 cut(s)	1139
XmnI	GAANNNNTTC	3 cut(s)	111, 304, 319
XspI	CTAG	3 cut(s)	59, 648, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.