Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004711.1

Orthogroup ID

OG0004750

Physical Location & Seq

Genomic Coordinates Reverse (-)

121983 .. 132689

Gene Structure 10707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004711.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3630 bp

atgtctattcccaaggagccggaccaggtaatgaagcagaggggaggctctgttctcggaaagaagaccattctcaagagtgaccacttccctggctgccagaacaaacgcctctccccccacattgacggcgctcccaattaccgtcaggccgacaagttacgtgttcatggtgttgcgattcccacaattgatggaatccagaatgttcttaagcatattggagctcagcaaattgatggcaagcgagcccaagttctttggattaaccttcgcgaggaaccgcttgtttacattaatgggcgcccttttgtgctgcgtgatgtggaaagacccttctccaaccttgaatatacgggaattaacagggctagggttgaacaaatggaagcccgattgaaagaagatatcttggttgaagctgcaagatatggaaataagatccttgtcacggacgaattgccagatggccagatggtcgatcaatgggaaccggtgtcatgtgattctgtgaagacaccactagaggtttacgaggaattgcaactcataggataccgggttgattatgaacgtgttcctgtaactgatgaaaaatcacctaaggagctggattttgatatcctggttcataaaatttctcaagctgacataaatgcagaaataatttttaattgtcaaatgggacgagggcgaactacaactgggatggtcattgctactctgatatacctcaaccgtataggagcttctggtattccaagaacgaactcaatcggaaaagtttctgactccagtgtgattgtcgttgataatgttccaaactcagaagatgcgatccgaagaggagaatatgcagtcataagaagcttgattcgggtcctagagggtggtgttgaagggaagagacaagtggacaaagtcatcgacaagtgttcctctatgcagaacttacgcgaagcaattgccatttatcgcaatagtatcctgcgtcaaccagatgagatgaaaagggaggcgtcactttcattttttgtggagtatttggaacgatattactttcttatatgctttgctgtgtacattcattccctccggtctagttcctctgatcattgcagctttgctgactggatgaaagctcgaccagaactgtacagcattattcgcaggttgctgagaagagatccaatgggtgcacttggatatgcaacgtttaatccatcactgaagaagattgatgaatctgctgataaccgcccttctgagatgggtgtagttgctgccttgagaaagggtgaggtccttggtagtcaaactgttttgaaaagtgaccactgtcccggttgccaaaacccaaatttacccgagcgcgtggatggtgctcctaatttccgagaggtccctggatttccagtttatggagttgcaaacccaacaattgatggtattcggtcagtcatccaaaggattggtagttccaaagatggttgcccaattttttggcacaatatgagagaagaacctgttatctatatcaatggaaaaccatttgtactccgcgaggttgaaagaccatacaaaaatatgcttgagtacacgggcattgatcgtgagagagtggagagaatggaagctcgactaaaagaagatatcctgcgtgaagctgaacattataggggtgctataatggttattcatgaaacagaagacggacaaatttttgatgcttgggaacatgtggattctggggctattcagaccccacttgaggttttcaaaagcttggagagagatggttttcccataaagtatgctcgtgtacccatcactgatggtaaagcgccgaaaagttccgactttgacaagttggctatgaatattgcttcttcatcaaaggccactgcttttgttttcaattgccagatgggtcgaggaaggacaaccacaggtactgtaattgcttgccttttgaaacttcgaattgactatgggagacctatcaaaatccttgttgacaatatcgccggtgaagaggtagatggtggtagctcaagtggtgaagaaacaggaggttctggtactgcatcatcctccagtatttcaaatgtaagaactgacaaggagcaaggccgtgtgtttggcatgaatgacatcctcctgttgtggaaaattacaagattgttcgataatggggttcaatgccgggaagccttagatgctattattgatagatgttctgctctacagaacatacgccaagccgttttgcaatatagaagggtattcaatcaacaacatgttgagcaaagggtaaggagggtggcattaaatcgtggtgctgagtacttggagcgctacttccgtttaattgcttttgcagcatacttaggaagtgaagcatttgatggattttgcaagcaaggagaatctaggatgacatttaagaattggatgcatcagagaccggaggttcaagcaatgaaatggagcattaaattaagacctggaagatttttaactgtccctgaggaattgagagcacctcaagagtcccaacatggagatgctgttatggaggctattatcaaggcccgtagtggctctgttctggggaaaggtgcgatacttaaaatgtatttctttcccggtcagaggacttctagccacatacaaattcatggtgcaccacatgtttacaaggtggacggatatcctgtgtatagcatggctacgccaacaattcctggtgccaaagagatgttagcatatttaggtgccaagcccgaagcagaaggatctgctactgcaaaagtggttttaactgatctgagagaagaagcagttgtttacattaatggcacaccatttgtgttgcgggagctacataaacctgttgatacactcaagcatgtgggaataactggcccagtggtagaacacatggaagcacgattaaaagaggatatactatccgaggtcagacggtctggtggccgtatgcttttacatcgcgaggagtataacccttcattgaaccaatccagtgtcataggatacttggaaaacatctttgcagatgatgtgaagactccagctgaagtatatgcttctttgaaagatgagggttacaatatttcgtataggagaatcccattaactagagagagagaggctttagcttcggatgtggatgcaatccaatactgcataaatgactctgcaggatcatacctttttgtatcacatacgggatttggaggagttgcatatgcaatggccatcacttgtgtcagaattggtgcagaaacaaattttacattgaaggatctacaacctttggttagaacgaatcgatcgtatacacctgaagaggacttgccttctcgagctcctgatgaagaagttctgagaatgggtgactaccgtgacatactaagccttacaagggttcttgtttatggtcccaagagcaaagcagacgttgacagtgttattgaaaggtgtgcaggtgcagggcatttacgggatgatatcctttattatagtaaggaacttgagaagtttcctgatggtgatgatgagcaacgagcatacctcatggacatgggtattaaagctctaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTPlike_phytase

Protein Analysis

1209

Amino Acids

135.95

Weight (kDa)

6.61

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62010 AT3G62010
fragaria_vesca	FvH4_1g26030 FvH4_1g26030 FvH4_1g26030 FvH4_1g26030 FvH4_1g26030 FvH4_1g26030 FvH4_1g26030 FvH4_1g26030
malus_domestica	MD09G1291900.v1.1 MD09G1292000.v1.1 MD17G1285800.v1.1
prunus_persica	Prupe.3G000300_v2.0.a1 Prupe.3G000300_v2.0.a1 Prupe.3G000300_v2.0.a1
pyrus_communis	pycom09g20000 pycom17g28150 pycom17g28160
rosa_chinensis	RchiOBHm_Chr3g0485491
rosa_laevigata	RLG00000023148 RLG00000023149
rosa_multiflora	Rmu_sc0004711.1_g000027
rosa_roxburghii	Rroxscaffold_6G00397000
rosa_rugosa	Rorug03G0218500
rosa_samantha	Rh3AG268000 Rh3BG303500 Rh3CG301600 Rh3DG298400
rosa_wichuraiana	Rw3G023690 Rw3G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	3500
Acc36I	ACCTGC	2 cut(s)	1161, 3500
AccB1I	GGYRCC	3 cut(s)	303, 2750, 2777
AccB7I	CCANNNNNTGG	1 cut(s)	1421
AccI	GTMKAC	1 cut(s)	3362
AccII	CGCG	5 cut(s)	276, 957, 1374, 1563, 3015
AciI	CCGC	4 cut(s)	284, 1258, 1561, 2878
AclI	AACGTT	1 cut(s)	1214
AclWI	GGATC	6 cut(s)	436, 832, 1181, 2806, 3235, 3336
AcoI	YGGCCR	3 cut(s)	469, 2995, 3279
AcsI	RAATTY	5 cut(s)	636, 1360, 1719, 2676, 3313
AcuI	CTGAAG	3 cut(s)	1250, 3120, 3390
AcyI	GRCGYC	2 cut(s)	304, 1019
AfaI	GTAC	8 cut(s)	1082, 1157, 1557, 1598, 1824, 1954, 2083, 2348
AfeI	AGCGCT	1 cut(s)	2357
AfiI	CCNNNNNNNGG	6 cut(s)	277, 451, 1421, 1771, 2655, 3448
AflII	CTTAAG	1 cut(s)	212
AflIII	ACRYGT	5 cut(s)	163, 574, 1738, 2299, 2692
AgeI	ACCGGT	1 cut(s)	493
AjnI	CCWGG	6 cut(s)	24, 91, 624, 1405, 2506, 2746
AloI	GAACNNNNNNTCC	4 cut(s)	36, 68, 1462, 1494
Alw21I	GWGCWC	6 cut(s)	229, 1201, 1387, 2545, 2689, 3394
Alw26I	GTCTC	3 cut(s)	901, 1990, 2458
Alw44I	GTGCAC	2 cut(s)	1197, 2685
AlwI	GGATC	6 cut(s)	436, 832, 1181, 2806, 3235, 3336
AlwNI	CAGNNNCTG	1 cut(s)	1955
Ama87I	CYCGRG	2 cut(s)	1367, 3387
Aor51HI	AGCGCT	1 cut(s)	2357
AoxI	GGCC	8 cut(s)	150, 469, 1899, 2131, 2592, 2926, 2995, 3279
ApaLI	GTGCAC	2 cut(s)	1197, 2685
ApeKI	GCWGC	6 cut(s)	96, 316, 422, 1119, 1283, 2381
ApoI	RAATTY	5 cut(s)	636, 1360, 1719, 2676, 3313
AseI	ATTAAT	2 cut(s)	297, 2856
AsiGI	ACCGGT	1 cut(s)	493
Asp700I	GAANNNNTTC	3 cut(s)	576, 784, 3405
AspLEI	GCGC	5 cut(s)	134, 306, 1374, 1846, 2358
AspS9I	GGNCC	7 cut(s)	22, 880, 1303, 1402, 2593, 2927, 3464
AsuC2I	CCSGG	4 cut(s)	560, 1344, 2207, 2649
AsuHPI	GGTGA	6 cut(s)	591, 1310, 2042, 2072, 3431, 3587
AsuII	TTCGAA	1 cut(s)	1981
AvaI	CYCGRG	2 cut(s)	1367, 3387
AvaII	GGWCC	5 cut(s)	22, 880, 1303, 1402, 3464
AxyI	CCTNAGG	2 cut(s)	603, 2529
BaeGI	GKGCMC	2 cut(s)	1201, 2689
BalI	TGGCCA	2 cut(s)	471, 3281
BanI	GGYRCC	3 cut(s)	303, 2750, 2777
BanII	GRGCYC	3 cut(s)	229, 253, 3394
BarI	GAAGNNNNNNTAC	2 cut(s)	733, 765
BauI	CACGAG	1 cut(s)	1818
BbsI	GAAGAC	4 cut(s)	71, 521, 1716, 3095
Bbv12I	GWGCWC	6 cut(s)	229, 1201, 1387, 2545, 2689, 3394
BbvI	GCAGC	6 cut(s)	83, 303, 409, 1131, 1270, 2393
BceAI	ACGGC	4 cut(s)	145, 2118, 2249, 2982
BcgI	CGANNNNNNTGC	2 cut(s)	947, 981
BciT130I	CCWGG	6 cut(s)	26, 93, 626, 1407, 2508, 2748
BciVI	GTATCC	3 cut(s)	548, 995, 3050
BclI	TGATCA	1 cut(s)	1111
BcnI	CCSGG	4 cut(s)	560, 1344, 2207, 2649
BcoDI	GTCTC	3 cut(s)	901, 1990, 2458
BfaI	CTAG	7 cut(s)	372, 524, 884, 1101, 2433, 2664, 3162
BfmI	CTRYAG	2 cut(s)	2246, 3222
BfoI	RGCGCY	4 cut(s)	135, 307, 1847, 2359
BfrI	CTTAAG	1 cut(s)	212
BfuAI	ACCTGC	2 cut(s)	1161, 3500
BfuI	GTATCC	3 cut(s)	548, 995, 3050
BisI	GCNGC	6 cut(s)	97, 317, 423, 1120, 1284, 2382
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	6 cut(s)	98, 318, 424, 1121, 1285, 2383
BmcAI	AGTACT	1 cut(s)	2348
Bme18I	GGWCC	5 cut(s)	22, 880, 1303, 1402, 3464
BmeT110I	CYCGRG	2 cut(s)	1367, 3387
BmgT120I	GGNCC	7 cut(s)	22, 880, 1303, 1402, 2593, 2927, 3464
BmiI	GGNNCC	9 cut(s)	18, 282, 305, 492, 881, 1404, 2752, 2779, 3466
BmrI	ACTGGG	2 cut(s)	714, 2924
BmsI	GCATC	8 cut(s)	823, 1717, 2096, 2209, 2445, 2467, 2557, 3184
BmuI	ACTGGG	2 cut(s)	714, 2924
BoxI	GACNNNNGTC	1 cut(s)	1338
BpiI	GAAGAC	4 cut(s)	71, 521, 1716, 3095
BplI	GAGNNNNNCTC	4 cut(s)	2530, 2562, 3582, 3614
BpmI	CTGGAG	3 cut(s)	778, 2080, 3078
Bpu1102I	GCTNAGC	1 cut(s)	228
Bpu14I	TTCGAA	1 cut(s)	1981
BpuEI	CTTGAG	9 cut(s)	59, 627, 1309, 1613, 1790, 2038, 2532, 2891, 3578
BpuMI	CCSGG	4 cut(s)	560, 1344, 2207, 2649
Bsa29I	ATCGAT	1 cut(s)	3355
BsaAI	YACGTR	1 cut(s)	164
BsaHI	GRCGYC	2 cut(s)	304, 1019
BsaI	GGTCTC	2 cut(s)	1990, 2458
BsaJI	CCNNGG	5 cut(s)	12, 91, 1306, 1405, 2976
BsaWI	WCCGGW	3 cut(s)	493, 1095, 2467
BsaXI	ACNNNNNCTCC	4 cut(s)	36, 66, 2556, 2586
Bsc4I	CCNNNNNNNGG	6 cut(s)	277, 451, 1421, 1771, 2655, 3448
Bse118I	RCCGGY	2 cut(s)	493, 2027
Bse1I	ACTGG	8 cut(s)	709, 795, 1136, 1415, 2097, 2929, 2930, 3045
Bse21I	CCTNAGG	2 cut(s)	603, 2529
Bse3DI	GCAATG	4 cut(s)	714, 1114, 2487, 3282
BseBI	CCWGG	6 cut(s)	26, 93, 626, 1407, 2508, 2748
BseCI	ATCGAT	1 cut(s)	3355
BseDI	CCNNGG	5 cut(s)	12, 91, 1306, 1405, 2976
BseLI	CCNNNNNNNGG	6 cut(s)	277, 451, 1421, 1771, 2655, 3448
BseMI	GCAATG	4 cut(s)	714, 1114, 2487, 3282
BseMII	CTCAG	8 cut(s)	242, 840, 1169, 1257, 2334, 2520, 2822, 3401
BseNI	ACTGG	8 cut(s)	709, 795, 1136, 1415, 2097, 2929, 2930, 3045
BseRI	GAGGAG	3 cut(s)	861, 3032, 3276
BseSI	GKGCMC	2 cut(s)	1201, 2689
BseXI	GCAGC	6 cut(s)	83, 303, 409, 1131, 1270, 2393
BsgI	GTGCAG	3 cut(s)	3324, 3528, 3534
Bsh1236I	CGCG	5 cut(s)	276, 957, 1374, 1563, 3015
Bsh1285I	CGRYCG	1 cut(s)	3359
BshFI	GGCC	8 cut(s)	152, 471, 1901, 2133, 2594, 2928, 2997, 3281
BshNI	GGYRCC	3 cut(s)	303, 2750, 2777
BshTI	ACCGGT	1 cut(s)	493
BshVI	ATCGAT	1 cut(s)	3355
BsiEI	CGRYCG	1 cut(s)	3359
BsiHKAI	GWGCWC	6 cut(s)	229, 1201, 1387, 2545, 2689, 3394
BsiHKCI	CYCGRG	2 cut(s)	1367, 3387
BsiSI	CCGG	9 cut(s)	20, 494, 559, 1096, 1344, 2028, 2206, 2468, 2649
BslFI	GGGAC	6 cut(s)	699, 1326, 1388, 2510, 2539, 3450
BslI	CCNNNNNNNGG	6 cut(s)	277, 451, 1421, 1771, 2655, 3448
BsmAI	GTCTC	3 cut(s)	901, 1990, 2458
BsmFI	GGGAC	6 cut(s)	699, 1326, 1388, 2510, 2539, 3450
BsnI	GGCC	8 cut(s)	152, 471, 1901, 2133, 2594, 2928, 2997, 3281
Bso31I	GGTCTC	2 cut(s)	1990, 2458
BsoBI	CYCGRG	2 cut(s)	1367, 3387
Bsp119I	TTCGAA	1 cut(s)	1981
Bsp1286I	GDGCHC	7 cut(s)	229, 253, 1201, 1387, 2545, 2689, 3394
Bsp1407I	TGTACA	2 cut(s)	1080, 1155
Bsp1720I	GCTNAGC	1 cut(s)	228
Bsp68I	TCGCGA	2 cut(s)	276, 3015
BspACI	CCGC	4 cut(s)	284, 1258, 1561, 2878
BspANI	GGCC	8 cut(s)	152, 471, 1901, 2133, 2594, 2928, 2997, 3281
BspCNI	CTCAG	8 cut(s)	241, 839, 1170, 1258, 2335, 2521, 2823, 3402
BspDI	ATCGAT	1 cut(s)	3355
BspFNI	CGCG	5 cut(s)	276, 957, 1374, 1563, 3015
BspHI	TCATGA	1 cut(s)	1699
BspLI	GGNNCC	9 cut(s)	18, 282, 305, 492, 881, 1404, 2752, 2779, 3466
BspMAI	CTGCAG	1 cut(s)	3226
BspMI	ACCTGC	2 cut(s)	1161, 3500
BspPI	GGATC	6 cut(s)	436, 832, 1181, 2806, 3235, 3336
BspT104I	TTCGAA	1 cut(s)	1981
BspT107I	GGYRCC	3 cut(s)	303, 2750, 2777
BspTI	CTTAAG	1 cut(s)	212
BspTNI	GGTCTC	2 cut(s)	1990, 2458
BsrDI	GCAATG	4 cut(s)	714, 1114, 2487, 3282
BsrFI	RCCGGY	2 cut(s)	493, 2027
BsrGI	TGTACA	2 cut(s)	1080, 1155
BsrI	ACTGG	8 cut(s)	709, 795, 1136, 1415, 2097, 2929, 2930, 3045
BssAI	RCCGGY	2 cut(s)	493, 2027
BssECI	CCNNGG	5 cut(s)	12, 91, 1306, 1405, 2976
BssNAI	GTATAC	1 cut(s)	3363
BssNI	GRCGYC	2 cut(s)	304, 1019
BssSI	CACGAG	1 cut(s)	1818
BssT1I	CCWWGG	2 cut(s)	12, 1306
Bst1107I	GTATAC	1 cut(s)	3363
Bst2BI	CACGAG	1 cut(s)	1818
Bst2UI	CCWGG	6 cut(s)	26, 93, 626, 1407, 2508, 2748
Bst6I	CTCTTC	5 cut(s)	838, 899, 1177, 2028, 3366
BstACI	GRCGYC	2 cut(s)	304, 1019
BstAFI	CTTAAG	1 cut(s)	212
BstAUI	TGTACA	2 cut(s)	1080, 1155
BstBAI	YACGTR	1 cut(s)	164
BstBI	TTCGAA	1 cut(s)	1981
BstC8I	GCNNGC	4 cut(s)	245, 249, 1966, 2420
BstENI	CCTNNNNNAGG	1 cut(s)	275
BstFNI	CGCG	5 cut(s)	276, 957, 1374, 1563, 3015
BstH2I	RGCGCY	4 cut(s)	135, 307, 1847, 2359
BstHHI	GCGC	5 cut(s)	134, 306, 1374, 1846, 2358
BstMAI	GTCTC	3 cut(s)	901, 1990, 2458
BstMCI	CGRYCG	1 cut(s)	3359
BstMWI	GCNNNNNNNGC	3 cut(s)	1167, 2219, 2381
BstNI	CCWGG	6 cut(s)	26, 93, 626, 1407, 2508, 2748
BstNSI	RCATGY	4 cut(s)	1742, 2303, 2696, 2915
BstPAI	GACNNNNGTC	1 cut(s)	1338
BstSFI	CTRYAG	2 cut(s)	2246, 3222
BstSLI	GKGCMC	2 cut(s)	1201, 2689
BstUI	CGCG	5 cut(s)	276, 957, 1374, 1563, 3015
BstV1I	GCAGC	6 cut(s)	83, 303, 409, 1131, 1270, 2393
BstV2I	GAAGAC	4 cut(s)	71, 521, 1716, 3095
BstX2I	RGATCY	4 cut(s)	441, 1186, 2798, 3328
BstXI	CCANNNNNNTGG	3 cut(s)	92, 1472, 1503
BstYI	RGATCY	4 cut(s)	441, 1186, 2798, 3328
BstZ17I	GTATAC	1 cut(s)	3363
Bsu15I	ATCGAT	1 cut(s)	3355
Bsu36I	CCTNAGG	2 cut(s)	603, 2529
BsuI	GTATCC	3 cut(s)	548, 995, 3050
BsuRI	GGCC	8 cut(s)	152, 471, 1901, 2133, 2594, 2928, 2997, 3281
BsuTUI	ATCGAT	1 cut(s)	3355
BtgZI	GCGATG	1 cut(s)	2996
BtsI	GCAGTG	1 cut(s)	1902
BtsIMutI	CAGTG	8 cut(s)	802, 1226, 1336, 1830, 1902, 2937, 3052, 3496
BtuMI	TCGCGA	2 cut(s)	276, 3015
BveI	ACCTGC	2 cut(s)	1161, 3500
Cac8I	GCNNGC	4 cut(s)	245, 249, 1966, 2420
CaiI	CAGNNNCTG	1 cut(s)	1955
CciI	TCATGA	1 cut(s)	1699
CfoI	GCGC	5 cut(s)	134, 306, 1374, 1846, 2358
Cfr10I	RCCGGY	2 cut(s)	493, 2027
Cfr13I	GGNCC	7 cut(s)	22, 880, 1303, 1402, 2593, 2927, 3464
ClaI	ATCGAT	1 cut(s)	3355
CseI	GACGC	2 cut(s)	980, 1008
CsiI	ACCWGGT	1 cut(s)	24
Csp6I	GTAC	8 cut(s)	1081, 1156, 1556, 1597, 1823, 1953, 2082, 2347
CspAI	ACCGGT	1 cut(s)	493
CspCI	CAANNNNNGTGG	2 cut(s)	1891, 1926
CviQI	GTAC	8 cut(s)	1081, 1156, 1556, 1597, 1823, 1953, 2082, 2347
DinI	GGCGCC	1 cut(s)	305
EaeI	YGGCCR	3 cut(s)	469, 2995, 3279
Eam1104I	CTCTTC	5 cut(s)	838, 899, 1177, 2028, 3366
EarI	CTCTTC	5 cut(s)	838, 899, 1177, 2028, 3366
Ecl136II	GAGCTC	2 cut(s)	227, 3392
Eco130I	CCWWGG	2 cut(s)	12, 1306
Eco24I	GRGCYC	3 cut(s)	229, 253, 3394
Eco31I	GGTCTC	2 cut(s)	1990, 2458
Eco32I	GATATC	5 cut(s)	409, 622, 1654, 2714, 3535
Eco47I	GGWCC	5 cut(s)	22, 880, 1303, 1402, 3464
Eco47III	AGCGCT	1 cut(s)	2357
Eco53kI	GAGCTC	2 cut(s)	227, 3392
Eco57I	CTGAAG	3 cut(s)	1250, 3120, 3390
Eco81I	CCTNAGG	2 cut(s)	603, 2529
Eco88I	CYCGRG	2 cut(s)	1367, 3387
EcoICRI	GAGCTC	2 cut(s)	227, 3392
EcoNI	CCTNNNNNAGG	1 cut(s)	275
EcoO109I	RGGNCCY	3 cut(s)	880, 1303, 1402
EcoRII	CCWGG	6 cut(s)	24, 91, 624, 1405, 2506, 2746
EcoRV	GATATC	5 cut(s)	409, 622, 1654, 2714, 3535
EcoT14I	CCWWGG	2 cut(s)	12, 1306
EcoT22I	ATGCAT	1 cut(s)	2460
EcoT38I	GRGCYC	3 cut(s)	229, 253, 3394
EgeI	GGCGCC	1 cut(s)	305
EheI	GGCGCC	1 cut(s)	305
ErhI	CCWWGG	2 cut(s)	12, 1306
FaqI	GGGAC	6 cut(s)	699, 1326, 1388, 2510, 2539, 3450
FauI	CCCGC	1 cut(s)	2871
FauNDI	CATATG	1 cut(s)	3271
FbaI	TGATCA	1 cut(s)	1111
FblI	GTMKAC	1 cut(s)	3362
Fnu4HI	GCNGC	6 cut(s)	97, 317, 423, 1120, 1284, 2382
FriOI	GRGCYC	3 cut(s)	229, 253, 3394
Fsp4HI	GCNGC	6 cut(s)	97, 317, 423, 1120, 1284, 2382
FspBI	CTAG	7 cut(s)	372, 524, 884, 1101, 2433, 2664, 3162
GlaI	GCGC	5 cut(s)	133, 305, 1373, 1845, 2357
GluI	GCNGC	6 cut(s)	97, 317, 423, 1120, 1284, 2382
GsuI	CTGGAG	3 cut(s)	778, 2080, 3078
HaeII	RGCGCY	4 cut(s)	135, 307, 1847, 2359
HaeIII	GGCC	8 cut(s)	152, 471, 1901, 2133, 2594, 2928, 2997, 3281
HapII	CCGG	9 cut(s)	20, 494, 559, 1096, 1344, 2028, 2206, 2468, 2649
HgaI	GACGC	2 cut(s)	980, 1008
HhaI	GCGC	5 cut(s)	134, 306, 1374, 1846, 2358
Hin1I	GRCGYC	2 cut(s)	304, 1019
Hin6I	GCGC	5 cut(s)	132, 304, 1372, 1844, 2356
HinP1I	GCGC	5 cut(s)	132, 304, 1372, 1844, 2356
HincII	GTYRAC	3 cut(s)	995, 2017, 3487
HindII	GTYRAC	3 cut(s)	995, 2017, 3487
HindIII	AAGCTT	2 cut(s)	868, 1783
HpaII	CCGG	9 cut(s)	20, 494, 559, 1096, 1344, 2028, 2206, 2468, 2649
HphI	GGTGA	6 cut(s)	591, 1310, 2042, 2072, 3431, 3587
HpyCH4IV	ACGT	4 cut(s)	163, 574, 1214, 3483
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1167, 2219, 2381
HpySE526I	ACGT	4 cut(s)	163, 574, 1214, 3483
Hsp92I	GRCGYC	2 cut(s)	304, 1019
HspAI	GCGC	5 cut(s)	132, 304, 1372, 1844, 2356
KasI	GGCGCC	1 cut(s)	303
Ksp22I	TGATCA	1 cut(s)	1111
Lsp1109I	GCAGC	6 cut(s)	83, 303, 409, 1131, 1270, 2393
LweI	GCATC	8 cut(s)	823, 1717, 2096, 2209, 2445, 2467, 2557, 3184
MabI	ACCWGGT	1 cut(s)	24
MaeI	CTAG	7 cut(s)	372, 524, 884, 1101, 2433, 2664, 3162
MaeII	ACGT	4 cut(s)	163, 574, 1214, 3483
MaeIII	GTNAC	9 cut(s)	80, 159, 448, 583, 1020, 1331, 3128, 3419, 3428
MfeI	CAATTG	4 cut(s)	189, 963, 1440, 1918
MflI	RGATCY	4 cut(s)	441, 1186, 2798, 3328
MhlI	GDGCHC	7 cut(s)	229, 253, 1201, 1387, 2545, 2689, 3394
MlsI	TGGCCA	2 cut(s)	471, 3281
MluNI	TGGCCA	2 cut(s)	471, 3281
Mly113I	GGCGCC	1 cut(s)	304
MlyI	GAGTC	4 cut(s)	785, 2561, 3085, 3212
MmeI	TCCRAC	2 cut(s)	366, 1881
Mox20I	TGGCCA	2 cut(s)	471, 3281
Mph1103I	ATGCAT	1 cut(s)	2460
MroXI	GAANNNNTTC	3 cut(s)	576, 784, 3405
MscI	TGGCCA	2 cut(s)	471, 3281
MslI	CAYNNNNRTG	2 cut(s)	2565, 3605
Msp20I	TGGCCA	2 cut(s)	471, 3281
MspA1I	CMGCKG	1 cut(s)	3098
MspCI	CTTAAG	1 cut(s)	212
MspI	CCGG	9 cut(s)	20, 494, 559, 1096, 1344, 2028, 2206, 2468, 2649
MunI	CAATTG	4 cut(s)	189, 963, 1440, 1918
MvaI	CCWGG	6 cut(s)	26, 93, 626, 1407, 2508, 2748
MvnI	CGCG	5 cut(s)	276, 957, 1374, 1563, 3015
MwoI	GCNNNNNNNGC	3 cut(s)	1167, 2219, 2381
NarI	GGCGCC	1 cut(s)	304
NciI	CCSGG	4 cut(s)	560, 1344, 2207, 2649
NdeI	CATATG	1 cut(s)	3271
NlaIV	GGNNCC	9 cut(s)	18, 282, 305, 492, 881, 1404, 2752, 2779, 3466
NmuCI	GTSAC	6 cut(s)	80, 448, 1020, 1331, 3419, 3428
NruI	TCGCGA	2 cut(s)	276, 3015
NsiI	ATGCAT	1 cut(s)	2460
NspI	RCATGY	4 cut(s)	1742, 2303, 2696, 2915
NspV	TTCGAA	1 cut(s)	1981
PaeR7I	CTCGAG	1 cut(s)	3387
PagI	TCATGA	1 cut(s)	1699
PaqCI	CACCTGC	1 cut(s)	3500
PciI	ACATGT	3 cut(s)	1738, 2299, 2692
PcsI	WCGNNNNNNNCGW	1 cut(s)	3356
PdmI	GAANNNNTTC	3 cut(s)	576, 784, 3405
PfeI	GAWTC	9 cut(s)	181, 198, 506, 874, 1244, 1745, 2429, 3150, 3352
PflFI	GACNNNGTC	1 cut(s)	920
PflMI	CCANNNNNTGG	1 cut(s)	1421
PinAI	ACCGGT	1 cut(s)	493
PkrI	GCNGC	6 cut(s)	98, 318, 424, 1121, 1285, 2383
Ple19I	CGATCG	1 cut(s)	3359
PleI	GAGTC	4 cut(s)	785, 2560, 3085, 3212
PluTI	GGCGCC	1 cut(s)	307
PpsI	GAGTC	4 cut(s)	785, 2560, 3085, 3212
Ppu21I	YACGTR	1 cut(s)	164
PpuMI	RGGWCCY	3 cut(s)	880, 1303, 1402
PscI	ACATGT	3 cut(s)	1738, 2299, 2692
PshAI	GACNNNNGTC	1 cut(s)	1338
PshBI	ATTAAT	2 cut(s)	297, 2856
Psp124BI	GAGCTC	2 cut(s)	229, 3394
Psp1406I	AACGTT	1 cut(s)	1214
Psp5II	RGGWCCY	3 cut(s)	880, 1303, 1402
Psp6I	CCWGG	6 cut(s)	24, 91, 624, 1405, 2506, 2746
PspGI	CCWGG	6 cut(s)	24, 91, 624, 1405, 2506, 2746
PspN4I	GGNNCC	9 cut(s)	18, 282, 305, 492, 881, 1404, 2752, 2779, 3466
PspPI	GGNCC	7 cut(s)	22, 880, 1303, 1402, 2593, 2927, 3464
PspPPI	RGGWCCY	3 cut(s)	880, 1303, 1402
PstI	CTGCAG	1 cut(s)	3226
PstNI	CAGNNNCTG	1 cut(s)	1955
PsuI	RGATCY	4 cut(s)	441, 1186, 2798, 3328
PsyI	GACNNNGTC	1 cut(s)	920
PvuI	CGATCG	1 cut(s)	3359
PvuII	CAGCTG	1 cut(s)	3098
RruI	TCGCGA	2 cut(s)	276, 3015
RsaI	GTAC	8 cut(s)	1082, 1157, 1557, 1598, 1824, 1954, 2083, 2348
RsaNI	GTAC	8 cut(s)	1081, 1156, 1556, 1597, 1823, 1953, 2082, 2347
RseI	CAYNNNNRTG	2 cut(s)	2565, 3605
SacI	GAGCTC	2 cut(s)	229, 3394
SatI	GCNGC	6 cut(s)	97, 317, 423, 1120, 1284, 2382
Sau96I	GGNCC	7 cut(s)	22, 880, 1303, 1402, 2593, 2927, 3464
ScaI	AGTACT	1 cut(s)	2348
SchI	GAGTC	4 cut(s)	785, 2561, 3085, 3212
SduI	GDGCHC	7 cut(s)	229, 253, 1201, 1387, 2545, 2689, 3394
SexAI	ACCWGGT	1 cut(s)	24
SfaNI	GCATC	8 cut(s)	823, 1717, 2096, 2209, 2445, 2467, 2557, 3184
SfcI	CTRYAG	2 cut(s)	2246, 3222
SfoI	GGCGCC	1 cut(s)	305
Sfr274I	CTCGAG	1 cut(s)	3387
SfuI	TTCGAA	1 cut(s)	1981
SgrAI	CRCCGGYG	1 cut(s)	2027
SinI	GGWCC	5 cut(s)	22, 880, 1303, 1402, 3464
SlaI	CTCGAG	1 cut(s)	3387
SmiMI	CAYNNNNRTG	2 cut(s)	2565, 3605
SsiI	CCGC	4 cut(s)	284, 1258, 1561, 2878
SspDI	GGCGCC	1 cut(s)	303
SspI	AATATT	2 cut(s)	1882, 3136
SspMI	CTAG	7 cut(s)	372, 524, 884, 1101, 2433, 2664, 3162
SstI	GAGCTC	2 cut(s)	229, 3394
StyI	CCWWGG	2 cut(s)	12, 1306
TaiI	ACGT	4 cut(s)	166, 577, 1217, 3486
TaqI	TCGA	9 cut(s)	480, 927, 1144, 1639, 1933, 1981, 2187, 3355, 3388
TaqII	GACCGA	1 cut(s)	1443
TatI	WGTACW	5 cut(s)	1080, 1155, 1555, 1596, 2346
TfiI	GAWTC	9 cut(s)	181, 198, 506, 874, 1244, 1745, 2429, 3150, 3352
TscAI	CASTG	8 cut(s)	802, 1233, 1343, 1837, 1909, 2937, 3052, 3496
TseFI	GTSAC	6 cut(s)	80, 448, 1020, 1331, 3419, 3428
TseI	GCWGC	6 cut(s)	96, 316, 422, 1119, 1283, 2381
Tsp45I	GTSAC	6 cut(s)	80, 448, 1020, 1331, 3419, 3428
TspGWI	ACGGA	4 cut(s)	467, 1728, 2354, 2724
TspRI	CASTG	8 cut(s)	802, 1233, 1343, 1837, 1909, 2937, 3052, 3496
Tth111I	GACNNNGTC	1 cut(s)	920
Van91I	CCANNNNNTGG	1 cut(s)	1421
Vha464I	CTTAAG	1 cut(s)	212
VneI	GTGCAC	2 cut(s)	1197, 2685
VpaK11BI	GGWCC	5 cut(s)	22, 880, 1303, 1402, 3464
VspI	ATTAAT	2 cut(s)	297, 2856
XagI	CCTNNNNNAGG	1 cut(s)	275
XapI	RAATTY	5 cut(s)	636, 1360, 1719, 2676, 3313
XceI	RCATGY	4 cut(s)	1742, 2303, 2696, 2915
XhoI	CTCGAG	1 cut(s)	3387
XmiI	GTMKAC	1 cut(s)	3362
XmnI	GAANNNNTTC	3 cut(s)	576, 784, 3405
XspI	CTAG	7 cut(s)	372, 524, 884, 1101, 2433, 2664, 3162
ZrmI	AGTACT	1 cut(s)	2348
Zsp2I	ATGCAT	1 cut(s)	2460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.