Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007858

Physical Location & Seq

Genomic Coordinates Forward (+)

26265658 .. 26266603

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g28240.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAGCACCGCCAGAATCGCCGCCACTCAGCCTCTCTTCTTCCCTGCACTCCACTGTCACAGACCTCCCTCTATTTATATGGTGGGCTCTAAACCAAACAGAACCTCCCCCTCCCTAAAATTGCGATGCTCGGTGGCCAAAGAATCGCCCATATCTCCATCGGGGCTCAGTGGAGAGGGTACACAGTCGGGCTTCTTTGACTGCGTGGTGGTTGGCGGCGGAATCAGTGGGCTATGCATCGCTCAGGCGCTGGCCACCAAGCACGGCGACGCCGTTCCGCATATCATAGTCACTGAGGCCAGGGACCGCGTGGGAGGCAACATCATCACCGTCGAAAAGGACGGCTATCTCTGGGAAGAAGGCCCCAATAGTTTTCAGCCGTCCGATCCCATGCTCACTATGATGGTGGACTGTGGTTTGAAAGATGATCTGGTTCTTGGGGATCCAAATGCACCTCGGTTCGTGTTGTGGGATGGCAAGTTGAGGCCCGTGCCATCCAGCCCAGCCGACATACCTTTCTTTGACTTGATGAGCATCGGCGGCAAAATCAGGGCTGCCTTTGGTGCTCTTGGCATTCGCCCTTCTCCACCTCCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004729 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0016491 GO:0016627 GO:0016634 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0070818 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

200

Amino Acids

21.05

Weight (kDa)

6.89

Isoelectric Point (pI)

58.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01690 AT4G01690
fragaria_vesca	FvH4_1g26170 FvH4_1g26170 FvH4_1g26170
malus_domestica	MD09G1291200.v1.1
prunus_persica	Prupe.3G001700_v2.0.a1 Prupe.3G001700_v2.0.a1
pyrus_communis	pycom09g19900 pycom17g28240
rosa_chinensis	RchiOBHm_Chr3g0485661
rosa_laevigata	RLG00000023135
rosa_multiflora	Rmu_sc0004711.1_g000001 Rmu_sc0017693.1_g000001 Rmu_sc0017693.1_g000002
rosa_roxburghii	Rroxscaffold_6G00396540 Rroxscaffold_6G00396860
rosa_rugosa	Rorug03G0220500 Rorug03G0220500
rosa_samantha	Rh3AG269500 Rh3BG305500 Rh3CG303600 Rh3DG299800
rosa_wichuraiana	Rw3G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	309
AciI	CCGC	7 cut(s)	9, 21, 216, 219, 278, 307, 540
AclWI	GGATC	3 cut(s)	380, 437, 450
AcoI	YGGCCR	2 cut(s)	135, 252
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	299
Alw21I	GWGCWC	2 cut(s)	8, 568
AlwI	GGATC	3 cut(s)	380, 437, 450
AlwNI	CAGNNNCTG	1 cut(s)	250
AoxI	GGCC	5 cut(s)	135, 252, 297, 361, 485
ApeKI	GCWGC	1 cut(s)	554
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	3 cut(s)	304, 362, 486
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	304
BalI	TGGCCA	2 cut(s)	137, 254
BamHI	GGATCC	1 cut(s)	442
BanII	GRGCYC	2 cut(s)	89, 168
Bbv12I	GWGCWC	2 cut(s)	8, 568
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	4 cut(s)	166, 397, 467, 502
BceAI	ACGGC	4 cut(s)	257, 280, 358, 364
BciT130I	CCWGG	1 cut(s)	301
BfoI	RGCGCY	1 cut(s)	251
BisI	GCNGC	4 cut(s)	21, 217, 541, 555
BlsI	GCNGC	4 cut(s)	22, 218, 542, 556
Bme1390I	CCNGG	1 cut(s)	301
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	3 cut(s)	304, 362, 486
BmiI	GGNNCC	3 cut(s)	305, 364, 444
BmrFI	CCNGG	1 cut(s)	301
BmsI	GCATC	3 cut(s)	116, 246, 543
Bpu10I	CCTNAGC	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	533
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	2 cut(s)	300, 455
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bse8I	GATNNNNATC	1 cut(s)	533
BseBI	CCWGG	1 cut(s)	301
BseDI	CCNNGG	2 cut(s)	300, 455
BseGI	GGATG	2 cut(s)	478, 494
BseJI	GATNNNNATC	1 cut(s)	533
BseMII	CTCAG	4 cut(s)	41, 181, 257, 285
BseRI	GAGGAG	1 cut(s)	582
BseXI	GCAGC	1 cut(s)	541
BseYI	CCCAGC	1 cut(s)	502
BsgI	GTGCAG	1 cut(s)	30
Bsh1236I	CGCG	1 cut(s)	309
BshFI	GGCC	5 cut(s)	137, 254, 299, 363, 487
BsiHKAI	GWGCWC	2 cut(s)	8, 568
BslFI	GGGAC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	317
BsmI	GAATGC	1 cut(s)	573
BsnI	GGCC	5 cut(s)	137, 254, 299, 363, 487
Bsp1286I	GDGCHC	4 cut(s)	8, 89, 168, 568
Bsp143I	GATC	3 cut(s)	385, 427, 442
BspACI	CCGC	7 cut(s)	9, 21, 216, 219, 278, 307, 540
BspANI	GGCC	5 cut(s)	137, 254, 299, 363, 487
BspCNI	CTCAG	4 cut(s)	40, 180, 256, 286
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	3 cut(s)	305, 364, 444
BspPI	GGATC	3 cut(s)	380, 437, 450
BssECI	CCNNGG	2 cut(s)	300, 455
BssMI	GATC	3 cut(s)	385, 427, 442
BssNI	GRCGYC	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	301
Bst4CI	ACNGT	4 cut(s)	56, 186, 331, 413
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	4 cut(s)	27, 167, 243, 294
BstF5I	GGATG	2 cut(s)	478, 494
BstFNI	CGCG	1 cut(s)	309
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	3 cut(s)	388, 430, 445
BstMBI	GATC	3 cut(s)	385, 427, 442
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 315, 540, 563
BstNI	CCWGG	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	299
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	541
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BsuRI	GGCC	5 cut(s)	137, 254, 299, 363, 487
BtgZI	GCGATG	2 cut(s)	139, 223
BtsCI	GGATG	2 cut(s)	478, 494
BtsIMutI	CAGTG	4 cut(s)	52, 175, 232, 291
Cac8I	GCNNGC	1 cut(s)	252
CaiI	CAGNNNCTG	1 cut(s)	250
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	3 cut(s)	304, 362, 486
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	2 cut(s)	391, 597
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	4 cut(s)	27, 167, 243, 294
DpnI	GATC	3 cut(s)	387, 429, 444
DpnII	GATC	3 cut(s)	385, 427, 442
EaeI	YGGCCR	2 cut(s)	135, 252
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
EciI	GGCGGA	1 cut(s)	234
Eco24I	GRGCYC	2 cut(s)	89, 168
Eco47I	GGWCC	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	299
EcoT22I	ATGCAT	1 cut(s)	239
EcoT38I	GRGCYC	2 cut(s)	89, 168
FaeI	CATG	2 cut(s)	394, 600
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	2 cut(s)	390, 596
Fnu4HI	GCNGC	4 cut(s)	21, 217, 541, 555
FokI	GGATG	2 cut(s)	481, 485
FriOI	GRGCYC	2 cut(s)	89, 168
Fsp4HI	GCNGC	4 cut(s)	21, 217, 541, 555
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	4 cut(s)	21, 217, 541, 555
GsaI	CCCAGC	1 cut(s)	506
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	5 cut(s)	137, 254, 299, 363, 487
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	1 cut(s)	250
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	2 cut(s)	394, 600
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HinfI	GANTC	3 cut(s)	15, 143, 222
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	2 cut(s)	182, 409
Hpy188I	TCNGA	1 cut(s)	385
Hpy8I	GTNNAC	2 cut(s)	182, 409
Hpy99I	CGWCG	2 cut(s)	272, 335
HpyAV	CCTTC	2 cut(s)	353, 591
HpyCH4III	ACNGT	4 cut(s)	56, 186, 331, 413
HpyCH4V	TGCA	3 cut(s)	47, 237, 452
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 315, 540, 563
HpyF3I	CTNAG	4 cut(s)	27, 167, 243, 294
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	394, 600
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	3 cut(s)	385, 427, 442
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	3 cut(s)	116, 246, 543
MaeIII	GTNAC	2 cut(s)	56, 289
MalI	GATC	3 cut(s)	387, 429, 444
MboI	GATC	3 cut(s)	385, 427, 442
MboII	GAAGA	3 cut(s)	28, 31, 368
MflI	RGATCY	1 cut(s)	442
MhlI	GDGCHC	4 cut(s)	8, 89, 168, 568
MlsI	TGGCCA	2 cut(s)	137, 254
MluCI	AATT	1 cut(s)	119
MluNI	TGGCCA	2 cut(s)	137, 254
Mox20I	TGGCCA	2 cut(s)	137, 254
Mph1103I	ATGCAT	1 cut(s)	239
MscI	TGGCCA	2 cut(s)	137, 254
MslI	CAYNNNNRTG	1 cut(s)	401
Msp20I	TGGCCA	2 cut(s)	137, 254
MspR9I	CCNGG	1 cut(s)	301
Mva1269I	GAATGC	1 cut(s)	573
MvaI	CCWGG	1 cut(s)	301
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	4 cut(s)	17, 315, 540, 563
NdeII	GATC	3 cut(s)	385, 427, 442
NlaIII	CATG	2 cut(s)	394, 600
NlaIV	GGNNCC	3 cut(s)	305, 364, 444
NmuCI	GTSAC	2 cut(s)	56, 289
NsiI	ATGCAT	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	1 cut(s)	573
PfeI	GAWTC	3 cut(s)	15, 143, 222
PkrI	GCNGC	4 cut(s)	22, 218, 542, 556
Psp6I	CCWGG	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	299
PspN4I	GGNNCC	3 cut(s)	305, 364, 444
PspPI	GGNCC	3 cut(s)	304, 362, 486
PstNI	CAGNNNCTG	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	442
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	401
SatI	GCNGC	4 cut(s)	21, 217, 541, 555
Sau3AI	GATC	3 cut(s)	385, 427, 442
Sau96I	GGNCC	3 cut(s)	304, 362, 486
ScrFI	CCNGG	1 cut(s)	301
SduI	GDGCHC	4 cut(s)	8, 89, 168, 568
SetI	ASST	5 cut(s)	67, 107, 457, 517, 592
SfaNI	GCATC	3 cut(s)	116, 246, 543
SinI	GGWCC	1 cut(s)	304
SmiMI	CAYNNNNRTG	1 cut(s)	401
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	7 cut(s)	9, 21, 216, 219, 278, 307, 540
StyD4I	CCNGG	1 cut(s)	299
TaaI	ACNGT	4 cut(s)	56, 186, 331, 413
TaqI	TCGA	1 cut(s)	333
TasI	AATT	1 cut(s)	119
TauI	GCSGC	3 cut(s)	23, 219, 543
TfiI	GAWTC	3 cut(s)	15, 143, 222
TscAI	CASTG	4 cut(s)	59, 175, 232, 298
TseFI	GTSAC	2 cut(s)	56, 289
TseI	GCWGC	1 cut(s)	554
Tsp45I	GTSAC	2 cut(s)	56, 289
TspRI	CASTG	4 cut(s)	59, 175, 232, 298
VpaK11BI	GGWCC	1 cut(s)	304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307
Zsp2I	ATGCAT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.