Rh3CG303600

Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
31566280 .. 31570318
4039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG303600.1

Sequence Viewer

Length: 1170 bp
ATGACCACACTTTCCAGGCTCGCCGACCTCCCTTCCTTCGCCGCCCCTCCGCCTCTTCTCACTCACCGACCACCTCCCTCCGTCTTCCTCACTCCCAAACCTACCAAGCCCTCTCCTCCTCATCACTTCTTCAAACTCCGATGCTCGGTCGCCAAACAGTCCACCGTTACTCCGGTAGAGGTCGCCGCAGACGGCGCGATCTCCTCCGTTGACTGCGTGGTGGTGGGCGGCGGAATCAGCGGACTCTGCATCGCTCAGGCGCTGGCCACCAAGCACAACGACGCCGTTCCGAATGTGATAGTGACGGAGGCCAGAGACCGAGTTGGAGGCAACATCATCACCGTAGAGAAGGACGGGTATCTCTGGGAAGAAGGCCCCAATAGTTTTCAGCCGTCCGATTCCATGCTCACCATGCTGGTGGATAGTGGTTTGAAGGATGATTTGGTTCTGGGGGATCCGAATGCACCTCGGTTTGTGTTGTGGGATGGCAAGTTGAGGCCTGTACCTTCTAGCCCGGCGGACATAGCTTTCTTTGACTTGATGAGCATTGGCGGCAAACTCAGGGCTGCATTTGGTGCTCTTGGAATTCGTCCCTCTCCTCCTCCTCCAGGTCAGGAGGAATCAGTTGAAGAGTTTGTCCGTCGTAATCTTGGAGATGAGGTTTTTGAACGCCTGATTGAGCCTTTTTGTTCAGGTGTTTATGCGGGTGATCCTTCAAAGTTAAGTATGAAAGCAGCATTTGGCAAAGTTTGGAACCTAGAGCAAAATGGGGGTAGCATCATTGGTGGAGCTTTTAAAGCAATCCAGGAGAGAAATCGTGCTCCAAAGACACCTCGAGATCCGCGTCTGCCAAAACCAAAGGGCCAAACAGTTGGATCTCTTAGGAAGGGTCTTTCCATGCTGCCAGATGCACTTTCTTCAAGGTTGGGTGACAAAGTGAAGGTATCCTGGAAGCTTTCAGATATCAGTAAATTGGACAAAGGAGGGTACACTCTGACATATGAAACTCCAGAAGGATTGGTCTCAGTACTGAGTAAAAGTGTTGTTATGACCATTCCATCCTATGTAGCAAGCAGTCTATTGCGTCCTCTATCAGTACGTTTCTTTGTTACATTTCTTTTCCTTTCCTTTAGTTACAAAATATTTTACTGTTGTAACCCTAAGGCCTAA

Protein Analysis

389

Amino Acids

41.96

Weight (kDa)

9.11

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_8 PF13450 74 - 133 3.4e-10 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 79 - 363 6.2e-58 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 197, 844
AclWI GGATC 5 cut(s) 449, 462, 704, 833, 883
AcoI YGGCCR 1 cut(s) 264
AcsI RAATTY 1 cut(s) 585
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 4 cut(s) 504, 989, 1029, 1098
AfiI CCNNNNNNNGG 2 cut(s) 145, 608
AgsI TTSAA 6 cut(s) 133, 433, 629, 668, 717, 921
AjnI CCWGG 4 cut(s) 14, 607, 804, 947
AjuI GAANNNNNNNTTGG 2 cut(s) 425, 457
AluBI AGCT 3 cut(s) 527, 791, 955
AluI AGCT 3 cut(s) 527, 791, 955
Alw21I GWGCWC 2 cut(s) 580, 823
Alw26I GTCTC 2 cut(s) 309, 1027
AlwI GGATC 5 cut(s) 449, 462, 704, 833, 883
AlwNI CAGNNNCTG 1 cut(s) 262
Ama87I CYCGRG 1 cut(s) 834
AoxI GGCC 6 cut(s) 264, 309, 373, 497, 862, 1164
ApeKI GCWGC 3 cut(s) 566, 734, 901
ApoI RAATTY 1 cut(s) 585
AspLEI GCGC 2 cut(s) 197, 262
AspS9I GGNCC 2 cut(s) 374, 862
AsuC2I CCSGG 1 cut(s) 515
AsuHPI GGTGA 5 cut(s) 56, 331, 400, 719, 941
AvaI CYCGRG 1 cut(s) 834
AxyI CCTNAGG 1 cut(s) 1161
BalI TGGCCA 1 cut(s) 266
BamHI GGATCC 1 cut(s) 454
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 2 cut(s) 580, 823
BbvI GCAGC 3 cut(s) 553, 746, 888
BccI CCATC 2 cut(s) 479, 1066
BceAI ACGGC 3 cut(s) 208, 269, 376
BciT130I CCWGG 4 cut(s) 16, 609, 806, 949
BciVI GTATCC 1 cut(s) 955
BcnI CCSGG 1 cut(s) 515
BcoDI GTCTC 2 cut(s) 309, 1027
BfaI CTAG 2 cut(s) 510, 758
BfoI RGCGCY 1 cut(s) 263
BfuI GTATCC 1 cut(s) 955
BisI GCNGC 7 cut(s) 42, 186, 229, 553, 567, 735, 902
BlsI GCNGC 7 cut(s) 43, 187, 230, 554, 568, 736, 903
BmcAI AGTACT 1 cut(s) 1029
Bme1390I CCNGG 5 cut(s) 16, 515, 609, 806, 949
BmeT110I CYCGRG 1 cut(s) 834
BmgT120I GGNCC 2 cut(s) 374, 862
BmiI GGNNCC 3 cut(s) 376, 456, 755
BmrFI CCNGG 5 cut(s) 16, 515, 609, 806, 949
BmsI GCATC 4 cut(s) 131, 258, 786, 898
BpiI GAAGAC 1 cut(s) 76
BpmI CTGGAG 2 cut(s) 591, 993
Bpu10I CCTNAGC 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 515
BsaHI GRCGYC 1 cut(s) 282
BsaI GGTCTC 2 cut(s) 309, 1027
BsaJI CCNNGG 1 cut(s) 467
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 4 cut(s) 154, 184, 645, 675
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 608
Bse21I CCTNAGG 1 cut(s) 1161
BseBI CCWGG 4 cut(s) 16, 609, 806, 949
BseDI CCNNGG 1 cut(s) 467
BseGI GGATG 3 cut(s) 442, 490, 1058
BseLI CCNNNNNNNGG 2 cut(s) 145, 608
BseMII CTCAG 4 cut(s) 269, 574, 1022, 1038
BseRI GAGGAG 6 cut(s) 105, 108, 193, 588, 591, 594
BseXI GCAGC 3 cut(s) 553, 746, 888
Bsh1236I CGCG 2 cut(s) 197, 844
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 6 cut(s) 266, 311, 375, 499, 864, 1166
BsiEI CGRYCG 1 cut(s) 150
BsiHKAI GWGCWC 2 cut(s) 580, 823
BsiHKCI CYCGRG 1 cut(s) 834
BsiSI CCGG 2 cut(s) 173, 515
BslFI GGGAC 1 cut(s) 576
BslI CCNNNNNNNGG 2 cut(s) 145, 608
BsmAI GTCTC 2 cut(s) 309, 1027
BsmFI GGGAC 1 cut(s) 576
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 6 cut(s) 266, 311, 375, 499, 864, 1166
Bso31I GGTCTC 2 cut(s) 309, 1027
BsoBI CYCGRG 1 cut(s) 834
Bsp1286I GDGCHC 2 cut(s) 580, 823
Bsp143I GATC 5 cut(s) 198, 454, 709, 838, 875
BspANI GGCC 6 cut(s) 266, 311, 375, 499, 864, 1166
BspCNI CTCAG 4 cut(s) 268, 573, 1023, 1037
BspFNI CGCG 2 cut(s) 197, 844
BspLI GGNNCC 3 cut(s) 376, 456, 755
BspPI GGATC 5 cut(s) 449, 462, 704, 833, 883
BspTNI GGTCTC 2 cut(s) 309, 1027
BssECI CCNNGG 1 cut(s) 467
BssMI GATC 5 cut(s) 198, 454, 709, 838, 875
BssNI GRCGYC 1 cut(s) 282
Bst2UI CCWGG 4 cut(s) 16, 609, 806, 949
Bst4CI ACNGT 5 cut(s) 159, 166, 343, 871, 1151
Bst6I CTCTTC 2 cut(s) 60, 624
BstACI GRCGYC 1 cut(s) 282
BstAPI GCANNNNNTGC 1 cut(s) 575
BstC8I GCNNGC 3 cut(s) 21, 264, 1072
BstDEI CTNAG 6 cut(s) 255, 560, 881, 1024, 1031, 1161
BstENI CCTNNNNNAGG 1 cut(s) 606
BstF5I GGATG 3 cut(s) 442, 490, 1058
BstFNI CGCG 2 cut(s) 197, 844
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 2 cut(s) 197, 262
BstKTI GATC 5 cut(s) 201, 457, 712, 841, 878
BstMAI GTCTC 2 cut(s) 309, 1027
BstMBI GATC 5 cut(s) 198, 454, 709, 838, 875
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 8 cut(s) 194, 237, 246, 412, 524, 552, 575, 797
BstNI CCWGG 4 cut(s) 16, 609, 806, 949
BstSCI CCNGG 5 cut(s) 14, 513, 607, 804, 947
BstUI CGCG 2 cut(s) 197, 844
BstV1I GCAGC 3 cut(s) 553, 746, 888
BstV2I GAAGAC 1 cut(s) 76
BstX2I RGATCY 3 cut(s) 454, 838, 875
BstXI CCANNNNNNTGG 2 cut(s) 418, 872
BstYI RGATCY 3 cut(s) 454, 838, 875
Bsu36I CCTNAGG 1 cut(s) 1161
BsuI GTATCC 1 cut(s) 955
BsuRI GGCC 6 cut(s) 266, 311, 375, 499, 864, 1166
BtgZI GCGATG 1 cut(s) 235
BtsCI GGATG 3 cut(s) 442, 490, 1058
Cac8I GCNNGC 3 cut(s) 21, 264, 1072
CaiI CAGNNNCTG 1 cut(s) 262
CfoI GCGC 2 cut(s) 197, 262
Cfr13I GGNCC 2 cut(s) 374, 862
CseI GACGC 3 cut(s) 290, 833, 1073
Csp6I GTAC 4 cut(s) 503, 988, 1028, 1097
CviAII CATG 3 cut(s) 403, 412, 898
CviQI GTAC 4 cut(s) 503, 988, 1028, 1097
DdeI CTNAG 6 cut(s) 255, 560, 881, 1024, 1031, 1161
DpnI GATC 5 cut(s) 200, 456, 711, 840, 877
DpnII GATC 5 cut(s) 198, 454, 709, 838, 875
DraI TTTAAA 1 cut(s) 796
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 2 cut(s) 60, 624
EarI CTCTTC 2 cut(s) 60, 624
EciI GGCGGA 3 cut(s) 39, 246, 533
Eco147I AGGCCT 2 cut(s) 499, 1166
Eco31I GGTCTC 2 cut(s) 309, 1027
Eco32I GATATC 1 cut(s) 964
Eco81I CCTNAGG 1 cut(s) 1161
Eco88I CYCGRG 1 cut(s) 834
EcoNI CCTNNNNNAGG 1 cut(s) 606
EcoO109I RGGNCCY 1 cut(s) 374
EcoRI GAATTC 1 cut(s) 585
EcoRII CCWGG 4 cut(s) 14, 607, 804, 947
EcoRV GATATC 1 cut(s) 964
FaeI CATG 3 cut(s) 406, 415, 901
FaqI GGGAC 1 cut(s) 576
FatI CATG 3 cut(s) 402, 411, 897
FauI CCCGC 1 cut(s) 697
FauNDI CATATG 1 cut(s) 1000
Fnu4HI GCNGC 7 cut(s) 42, 186, 229, 553, 567, 735, 902
FokI GGATG 3 cut(s) 449, 497, 1045
Fsp4HI GCNGC 7 cut(s) 42, 186, 229, 553, 567, 735, 902
FspBI CTAG 2 cut(s) 510, 758
GlaI GCGC 2 cut(s) 196, 261
GluI GCNGC 7 cut(s) 42, 186, 229, 553, 567, 735, 902
GsuI CTGGAG 2 cut(s) 591, 993
HaeII RGCGCY 1 cut(s) 263
HaeIII GGCC 6 cut(s) 266, 311, 375, 499, 864, 1166
HapII CCGG 2 cut(s) 173, 515
HgaI GACGC 3 cut(s) 290, 833, 1073
HhaI GCGC 2 cut(s) 197, 262
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 3 cut(s) 406, 415, 901
Hin6I GCGC 2 cut(s) 195, 260
HinP1I GCGC 2 cut(s) 195, 260
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 953
HinfI GANTC 4 cut(s) 234, 243, 398, 620
HpaII CCGG 2 cut(s) 173, 515
HphI GGTGA 5 cut(s) 56, 331, 400, 719, 941
Hpy166II GTNNAC 3 cut(s) 162, 211, 990
Hpy188I TCNGA 6 cut(s) 140, 291, 397, 459, 961, 996
Hpy188III TCNNGA 3 cut(s) 614, 836, 1010
Hpy8I GTNNAC 3 cut(s) 162, 211, 990
Hpy99I CGWCG 2 cut(s) 284, 645
HpyCH4III ACNGT 5 cut(s) 159, 166, 343, 871, 1151
HpyCH4IV ACGT 1 cut(s) 1099
HpyCH4V TGCA 4 cut(s) 249, 464, 569, 911
HpyF10VI GCNNNNNNNGC 8 cut(s) 194, 237, 246, 412, 524, 552, 575, 797
HpyF3I CTNAG 6 cut(s) 255, 560, 881, 1024, 1031, 1161
HpySE526I ACGT 1 cut(s) 1099
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 3 cut(s) 406, 415, 901
HspAI GCGC 2 cut(s) 195, 260
Kzo9I GATC 5 cut(s) 198, 454, 709, 838, 875
LmnI GCTCC 2 cut(s) 788, 826
Lsp1109I GCAGC 3 cut(s) 553, 746, 888
LweI GCATC 4 cut(s) 131, 258, 786, 898
MaeI CTAG 2 cut(s) 510, 758
MaeII ACGT 1 cut(s) 1099
MaeIII GTNAC 6 cut(s) 166, 301, 929, 1108, 1133, 1154
MalI GATC 5 cut(s) 200, 456, 711, 840, 877
MboI GATC 5 cut(s) 198, 454, 709, 838, 875
MboII GAAGA 6 cut(s) 47, 76, 121, 380, 641, 909
MflI RGATCY 3 cut(s) 454, 838, 875
MhlI GDGCHC 2 cut(s) 580, 823
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 2 cut(s) 585, 971
MluNI TGGCCA 1 cut(s) 266
MlyI GAGTC 1 cut(s) 237
MmeI TCCRAC 2 cut(s) 304, 853
Mox20I TGGCCA 1 cut(s) 266
MscI TGGCCA 1 cut(s) 266
MseI TTAA 2 cut(s) 722, 795
MslI CAYNNNNRTG 1 cut(s) 416
Msp20I TGGCCA 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 240
MspI CCGG 2 cut(s) 173, 515
MspR9I CCNGG 5 cut(s) 16, 515, 609, 806, 949
Mva1269I GAATGC 1 cut(s) 466
MvaI CCWGG 4 cut(s) 16, 609, 806, 949
MvnI CGCG 2 cut(s) 197, 844
MwoI GCNNNNNNNGC 8 cut(s) 194, 237, 246, 412, 524, 552, 575, 797
NciI CCSGG 1 cut(s) 515
NdeI CATATG 1 cut(s) 1000
NdeII GATC 5 cut(s) 198, 454, 709, 838, 875
NlaIII CATG 3 cut(s) 406, 415, 901
NlaIV GGNNCC 3 cut(s) 376, 456, 755
NmuCI GTSAC 2 cut(s) 301, 929
PaeR7I CTCGAG 1 cut(s) 834
PceI AGGCCT 2 cut(s) 499, 1166
PcsI WCGNNNNNNNCGW 1 cut(s) 841
PctI GAATGC 1 cut(s) 466
PfeI GAWTC 3 cut(s) 234, 398, 620
PfoI TCCNGGA 2 cut(s) 804, 947
PkrI GCNGC 7 cut(s) 43, 187, 230, 554, 568, 736, 903
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
Psp6I CCWGG 4 cut(s) 14, 607, 804, 947
PspGI CCWGG 4 cut(s) 14, 607, 804, 947
PspN4I GGNNCC 3 cut(s) 376, 456, 755
PspPI GGNCC 2 cut(s) 374, 862
PstNI CAGNNNCTG 1 cut(s) 262
PsuI RGATCY 3 cut(s) 454, 838, 875
RsaI GTAC 4 cut(s) 504, 989, 1029, 1098
RsaNI GTAC 4 cut(s) 503, 988, 1028, 1097
RseI CAYNNNNRTG 1 cut(s) 416
SaqAI TTAA 2 cut(s) 722, 795
SatI GCNGC 7 cut(s) 42, 186, 229, 553, 567, 735, 902
Sau3AI GATC 5 cut(s) 198, 454, 709, 838, 875
Sau96I GGNCC 2 cut(s) 374, 862
ScaI AGTACT 1 cut(s) 1029
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 5 cut(s) 16, 515, 609, 806, 949
SduI GDGCHC 2 cut(s) 580, 823
SfaNI GCATC 4 cut(s) 131, 258, 786, 898
Sfr274I CTCGAG 1 cut(s) 834
SlaI CTCGAG 1 cut(s) 834
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 834
SmoI CTYRAG 1 cut(s) 834
Sse9I AATT 2 cut(s) 585, 971
SseBI AGGCCT 2 cut(s) 499, 1166
SspI AATATT 1 cut(s) 1143
SspMI CTAG 2 cut(s) 510, 758
StuI AGGCCT 2 cut(s) 499, 1166
StyD4I CCNGG 5 cut(s) 14, 513, 607, 804, 947
TaaI ACNGT 5 cut(s) 159, 166, 343, 871, 1151
TaiI ACGT 1 cut(s) 1102
TaqI TCGA 1 cut(s) 835
TaqII GACCGA 2 cut(s) 136, 333
TasI AATT 2 cut(s) 585, 971
TatI WGTACW 1 cut(s) 1027
TauI GCSGC 4 cut(s) 44, 188, 231, 555
TfiI GAWTC 3 cut(s) 234, 398, 620
Tru1I TTAA 2 cut(s) 722, 795
Tru9I TTAA 2 cut(s) 722, 795
TseFI GTSAC 2 cut(s) 301, 929
TseI GCWGC 3 cut(s) 566, 734, 901
Tsp45I GTSAC 2 cut(s) 301, 929
TspDTI ATGAA 2 cut(s) 743, 1017
TspGWI ACGGA 4 cut(s) 70, 196, 320, 629
XagI CCTNNNNNAGG 1 cut(s) 606
XapI RAATTY 1 cut(s) 585
XhoI CTCGAG 1 cut(s) 834
XspI CTAG 2 cut(s) 510, 758
ZrmI AGTACT 1 cut(s) 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.