Rorug03G0220500

Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
20115580 .. 20121128
5549 bp
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UTR
Exon/CDS
Intron
Rorug03G0220500.1

Sequence Viewer

Length: 1803 bp
ATGGAGAAAAAGAGAAAGATCACTCAATACAGAGAGAGGCTGGACAAGACACTGACATCGCCTAATCTAACAAATAAGGAGGCTCTAAAAGTCCTTGTCAAGGATCAGCTTTTGCGTTCTTCAGAAACTGAAATTGAAGGTTGTAATGCAAATGTGATAGAACAAAGGACGGCTGAGGTGTCAAATTTGCTTGACATGCTGAGGAGTGCTTCAGATTGTGATGACAAGGGGTTGAAAACTTGTGATACCCTATCACATCCTGAATGGAAATTAAAACAGGACAATGAGGAGTTCCGGGTTATGTATCGTGAGGGAATCCAAGGCTCTCCATTTCATACATTACTTGTTGAAGGTTACATAGATGGGCCTGTAGATGTCTGTTTGTGCATCTCATGTGAGGCAGACCTTTACAAGAAATGGTGGCCTCAGTCTACCATTCCAACTTTTAAAATTCTCTCTGGGAAGTGTTTACAGAAGGTCGGGATTGGCGAACAGATATCTGTAGTGAGGATGAAGATTCCGTGGCCACTTTCACCTAGGGAAGCTGTTGTGCACTATTTTGTGTTTGAGTACTATGAAGATGACCTGGTTGTTGTTCTCTTGAACACGATCTCTGATTTTGGAGGCATTGATGGTGGCCTTAAAAATGAGGCAACTGATGGAGCAAAGGATGTAGTTAGGATAGATGTAGTAGGTGGCTTTGCTTTGCAGAAGGTTACCGATGATAGAAGTTACTTTCGGACAATAGCAAATATGGATATAAAGATGGACTTGATCCCACCATCCCTTATAAATTTTATCTCAAGGCAGCTCATTGGCAATGGTTTCAGACTGTATCAAAAGGTAGTGTCTTCTAAGCTTAATCGTGATGAAGATTACAGCAAGGCTTTGAGAGGCCCACTATACTCTCGCATACGTGAAGCTCTTTCTTCACTTCATGAATCAAGCAGGCTTCTGGAGGGAAAAAAGCTAAATGGTGATGCATCCAATCTCTCTGAAGAACATCTAGTTAAAAATAAAATGAATGATTTGAAGTTGGTGGATATGGATGAGAAAGTTCATGATGAACACCTTGCAAGTGAAGCTACCCCAGATGATGCACATGTTACTGGAGGAAACACTCTTTGTGAGATTGAGGAGGTAGAGAGTGAAGAAAGCAAGACTGAGGAGATTAGAAGTGAAAAAAGCAAGATTGAGGTGGTAGAGAGCAAAGAAAGCAGGCAGCTTGAGGATCAAACATCCAACAGAATTCCAGAAAGGGGACATGTAAATGGAAAGAGAAACGGGTTTATCAGTTCTGAGGTGGAAGAAGCTATAGGAACAATAGAAAGGGTCATTTTGAGGGTTAGGCAATATAGGTTCAGCGCTGAAATGCCATCCTCTGGTTTCACCAATGAAGTCTTACGAAAGGAAAATGATGGACGTAACCCAGAGTCCTTAGAAGATGAAGTCCGCTTAAGTGAACATTTTTCTGCAGTACCTAAAGAAGTGGACACTGAAGGGGTGTTGACTACACCTTTAAGGAATAGCACTGCCATTCAAAACATAAGTTATGCAGGCTCAAATTACTTGTCGAAGGAAGCTAACCATAACAGAATAGTACCTACTACCCCATTGTGTTCCTCCAAAGATGGGATTGCTGAGTTACCAGTAGTGGATAACATCATGCACAGTACTAACCAAATTAGCTGCAAGACAAATGACACTCATCAAAGTAATCCCAGTAGAAGGAAGAAGTCAGGGCGGCAAAGAAGGCTTGGGTTCTGTTGCTTCAACATCAATTCGGGAGAGATAGATTCTTAA

Protein Analysis

600

Amino Acids

67.71

Weight (kDa)

5.49

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 791
AccB7I CCANNNNNTGG 1 cut(s) 1382
AccI GTMKAC 1 cut(s) 431
AciI CCGC 2 cut(s) 1453, 1744
AclWI GGATC 3 cut(s) 111, 769, 1239
AcoI YGGCCR 1 cut(s) 524
AcsI RAATTY 4 cut(s) 184, 450, 793, 1248
AcuI CTGAAG 4 cut(s) 105, 195, 1017, 1518
AfaI GTAC 4 cut(s) 572, 1479, 1602, 1675
AfeI AGCGCT 1 cut(s) 1366
AfiI CCNNNNNNNGG 5 cut(s) 100, 1259, 1382, 1632, 1728
AflII CTTAAG 1 cut(s) 1456
AflIII ACRYGT 2 cut(s) 1102, 1264
AgsI TTSAA 7 cut(s) 137, 235, 350, 604, 1033, 1541, 1774
AjnI CCWGG 1 cut(s) 585
Alw21I GWGCWC 1 cut(s) 555
Alw44I GTGCAC 1 cut(s) 551
AlwI GGATC 3 cut(s) 111, 769, 1239
AlwNI CAGNNNCTG 1 cut(s) 128
Aor51HI AGCGCT 1 cut(s) 1366
AoxI GGCC 5 cut(s) 365, 422, 524, 637, 895
ApaLI GTGCAC 1 cut(s) 551
ApeKI GCWGC 3 cut(s) 808, 1222, 1689
ApoI RAATTY 4 cut(s) 184, 450, 793, 1248
ArsI GACNNNNNNTTYG 2 cut(s) 1556, 1588
AspA2I CCTAGG 1 cut(s) 536
AspLEI GCGC 1 cut(s) 1367
AspS9I GGNCC 2 cut(s) 365, 896
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 3 cut(s) 525, 989, 1381
AvrII CCTAGG 1 cut(s) 536
BaeGI GKGCMC 1 cut(s) 555
BalI TGGCCA 1 cut(s) 526
BbsI GAAGAC 1 cut(s) 843
Bbv12I GWGCWC 1 cut(s) 555
BbvCI CCTCAGC 2 cut(s) 174, 200
BbvI GCAGC 3 cut(s) 820, 1234, 1676
BccI CCATC 8 cut(s) 356, 626, 653, 760, 790, 1384, 1412, 1625
BceAI ACGGC 1 cut(s) 186
BciT130I CCWGG 1 cut(s) 587
BcnI CCSGG 1 cut(s) 296
BfaI CTAG 2 cut(s) 537, 1007
BfmI CTRYAG 4 cut(s) 369, 501, 1314, 1473
BfoI RGCGCY 1 cut(s) 1368
BfrI CTTAAG 1 cut(s) 1456
BisI GCNGC 4 cut(s) 809, 1223, 1690, 1745
BlnI CCTAGG 1 cut(s) 536
BlsI GCNGC 4 cut(s) 810, 1224, 1691, 1746
BmcAI AGTACT 2 cut(s) 572, 1675
Bme1390I CCNGG 2 cut(s) 296, 587
BmgT120I GGNCC 2 cut(s) 365, 896
BmrFI CCNGG 2 cut(s) 296, 587
BmrI ACTGGG 1 cut(s) 1716
BmsI GCATC 4 cut(s) 396, 970, 992, 1087
BmuI ACTGGG 1 cut(s) 1716
BpiI GAAGAC 1 cut(s) 843
BpmI CTGGAG 2 cut(s) 977, 1131
Bpu10I CCTNAGC 2 cut(s) 174, 200
BpuEI CTTGAG 2 cut(s) 787, 1247
BpuMI CCSGG 1 cut(s) 296
BsaAI YACGTR 1 cut(s) 917
BsaJI CCNNGG 3 cut(s) 319, 521, 536
Bsc4I CCNNNNNNNGG 5 cut(s) 100, 1259, 1382, 1632, 1728
Bse1I ACTGG 3 cut(s) 1114, 1649, 1722
Bse3DI GCAATG 1 cut(s) 826
BseBI CCWGG 1 cut(s) 587
BseDI CCNNGG 3 cut(s) 319, 521, 536
BseGI GGATG 8 cut(s) 256, 516, 676, 782, 983, 1054, 1238, 1376
BseLI CCNNNNNNNGG 5 cut(s) 100, 1259, 1382, 1632, 1728
BseMI GCAATG 1 cut(s) 826
BseMII CTCAG 6 cut(s) 165, 191, 440, 1155, 1290, 1632
BseNI ACTGG 3 cut(s) 1114, 1649, 1722
BseRI GAGGAG 4 cut(s) 217, 302, 1151, 1181
BseSI GKGCMC 1 cut(s) 555
BseXI GCAGC 3 cut(s) 820, 1234, 1676
BshFI GGCC 5 cut(s) 367, 424, 526, 639, 897
BsiHKAI GWGCWC 1 cut(s) 555
BsiSI CCGG 1 cut(s) 295
BslFI GGGAC 1 cut(s) 1275
BslI CCNNNNNNNGG 5 cut(s) 100, 1259, 1382, 1632, 1728
BsmFI GGGAC 1 cut(s) 1275
BsnI GGCC 5 cut(s) 367, 424, 526, 639, 897
Bsp1286I GDGCHC 1 cut(s) 555
Bsp143I GATC 5 cut(s) 18, 103, 609, 774, 1231
BspACI CCGC 2 cut(s) 1453, 1744
BspANI GGCC 5 cut(s) 367, 424, 526, 639, 897
BspCNI CTCAG 6 cut(s) 166, 192, 439, 1156, 1291, 1633
BspHI TCATGA 2 cut(s) 937, 1060
BspMAI CTGCAG 1 cut(s) 1477
BspPI GGATC 3 cut(s) 111, 769, 1239
BspTI CTTAAG 1 cut(s) 1456
BsrDI GCAATG 1 cut(s) 826
BsrI ACTGG 3 cut(s) 1114, 1649, 1722
BssECI CCNNGG 3 cut(s) 319, 521, 536
BssMI GATC 5 cut(s) 18, 103, 609, 774, 1231
BssT1I CCWWGG 2 cut(s) 319, 536
Bst2UI CCWGG 1 cut(s) 587
Bst4CI ACNGT 2 cut(s) 834, 1673
BstAFI CTTAAG 1 cut(s) 1456
BstBAI YACGTR 1 cut(s) 917
BstC8I GCNNGC 3 cut(s) 950, 1220, 1558
BstDEI CTNAG 8 cut(s) 174, 200, 426, 855, 1164, 1299, 1438, 1641
BstDSI CCRYGG 1 cut(s) 521
BstEII GGTNACC 1 cut(s) 715
BstENI CCTNNNNNAGG 1 cut(s) 98
BstF5I GGATG 8 cut(s) 256, 516, 676, 782, 983, 1054, 1238, 1376
BstH2I RGCGCY 1 cut(s) 1368
BstHHI GCGC 1 cut(s) 1367
BstKTI GATC 5 cut(s) 21, 106, 612, 777, 1234
BstMBI GATC 5 cut(s) 18, 103, 609, 774, 1231
BstMWI GCNNNNNNNGC 4 cut(s) 196, 1082, 1215, 1753
BstNI CCWGG 1 cut(s) 587
BstNSI RCATGY 3 cut(s) 199, 1106, 1268
BstPI GGTNACC 1 cut(s) 715
BstSCI CCNGG 2 cut(s) 294, 585
BstSFI CTRYAG 4 cut(s) 369, 501, 1314, 1473
BstSLI GKGCMC 1 cut(s) 555
BstV1I GCAGC 3 cut(s) 820, 1234, 1676
BstV2I GAAGAC 1 cut(s) 843
BsuRI GGCC 5 cut(s) 367, 424, 526, 639, 897
BtgI CCRYGG 1 cut(s) 521
BtgZI GCGATG 1 cut(s) 42
BtsCI GGATG 8 cut(s) 256, 516, 676, 782, 983, 1054, 1238, 1376
BtsI GCAGTG 1 cut(s) 1530
BtsIMutI CAGTG 3 cut(s) 50, 1494, 1530
Cac8I GCNNGC 3 cut(s) 950, 1220, 1558
CaiI CAGNNNCTG 1 cut(s) 128
CciI TCATGA 2 cut(s) 937, 1060
CfoI GCGC 1 cut(s) 1367
Cfr13I GGNCC 2 cut(s) 365, 896
CsiI ACCWGGT 1 cut(s) 585
Csp6I GTAC 4 cut(s) 571, 1478, 1601, 1674
CviAII CATG 7 cut(s) 196, 393, 938, 1061, 1103, 1265, 1666
CviQI GTAC 4 cut(s) 571, 1478, 1601, 1674
DdeI CTNAG 8 cut(s) 174, 200, 426, 855, 1164, 1299, 1438, 1641
DpnI GATC 5 cut(s) 20, 105, 611, 776, 1233
DpnII GATC 5 cut(s) 18, 103, 609, 774, 1231
DraI TTTAAA 1 cut(s) 448
EaeI YGGCCR 1 cut(s) 524
Eco130I CCWWGG 2 cut(s) 319, 536
Eco32I GATATC 1 cut(s) 498
Eco47III AGCGCT 1 cut(s) 1366
Eco57I CTGAAG 4 cut(s) 105, 195, 1017, 1518
Eco91I GGTNACC 1 cut(s) 715
EcoNI CCTNNNNNAGG 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 715
EcoRI GAATTC 1 cut(s) 1248
EcoRII CCWGG 1 cut(s) 585
EcoRV GATATC 1 cut(s) 498
EcoT14I CCWWGG 2 cut(s) 319, 536
EcoT22I ATGCAT 1 cut(s) 985
ErhI CCWWGG 2 cut(s) 319, 536
FaeI CATG 7 cut(s) 199, 396, 941, 1064, 1106, 1268, 1669
FalI AAGNNNNNCTT 2 cut(s) 755, 787
FaqI GGGAC 1 cut(s) 1275
FatI CATG 7 cut(s) 195, 392, 937, 1060, 1102, 1264, 1665
FblI GTMKAC 1 cut(s) 431
Fnu4HI GCNGC 4 cut(s) 809, 1223, 1690, 1745
FokI GGATG 8 cut(s) 243, 523, 683, 769, 970, 1061, 1225, 1363
Fsp4HI GCNGC 4 cut(s) 809, 1223, 1690, 1745
FspBI CTAG 2 cut(s) 537, 1007
GlaI GCGC 1 cut(s) 1366
GluI GCNGC 4 cut(s) 809, 1223, 1690, 1745
GsuI CTGGAG 2 cut(s) 977, 1131
HaeII RGCGCY 1 cut(s) 1368
HaeIII GGCC 5 cut(s) 367, 424, 526, 639, 897
HapII CCGG 1 cut(s) 295
HhaI GCGC 1 cut(s) 1367
Hin1II CATG 7 cut(s) 199, 396, 941, 1064, 1106, 1268, 1669
Hin6I GCGC 1 cut(s) 1365
HinP1I GCGC 1 cut(s) 1365
HincII GTYRAC 1 cut(s) 1509
HindII GTYRAC 1 cut(s) 1509
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 5 cut(s) 315, 517, 941, 1433, 1796
HpaII CCGG 1 cut(s) 295
HphI GGTGA 3 cut(s) 525, 989, 1381
Hpy166II GTNNAC 6 cut(s) 432, 470, 553, 1463, 1492, 1509
Hpy188I TCNGA 7 cut(s) 124, 214, 616, 741, 830, 997, 1300
Hpy8I GTNNAC 6 cut(s) 432, 470, 553, 1463, 1492, 1509
HpyAV CCTTC 8 cut(s) 131, 344, 469, 706, 1493, 1570, 1722, 1746
HpyCH4III ACNGT 2 cut(s) 834, 1673
HpyCH4IV ACGT 2 cut(s) 916, 1423
HpyF10VI GCNNNNNNNGC 4 cut(s) 196, 1082, 1215, 1753
HpyF3I CTNAG 8 cut(s) 174, 200, 426, 855, 1164, 1299, 1438, 1641
HpySE526I ACGT 2 cut(s) 916, 1423
Hsp92II CATG 7 cut(s) 199, 396, 941, 1064, 1106, 1268, 1669
HspAI GCGC 1 cut(s) 1365
Kzo9I GATC 5 cut(s) 18, 103, 609, 774, 1231
LmnI GCTCC 1 cut(s) 662
Lsp1109I GCAGC 3 cut(s) 820, 1234, 1676
LweI GCATC 4 cut(s) 396, 970, 992, 1087
MabI ACCWGGT 1 cut(s) 585
MaeI CTAG 2 cut(s) 537, 1007
MaeII ACGT 2 cut(s) 916, 1423
MaeIII GTNAC 6 cut(s) 353, 715, 731, 1105, 1424, 1644
MalI GATC 5 cut(s) 20, 105, 611, 776, 1233
MboI GATC 5 cut(s) 18, 103, 609, 774, 1231
MhlI GDGCHC 1 cut(s) 555
MlsI TGGCCA 1 cut(s) 526
MluCI AATT 9 cut(s) 132, 184, 269, 450, 793, 1248, 1564, 1683, 1780
MluNI TGGCCA 1 cut(s) 526
MlyI GAGTC 1 cut(s) 1442
MmeI TCCRAC 2 cut(s) 464, 1266
Mox20I TGGCCA 1 cut(s) 526
Mph1103I ATGCAT 1 cut(s) 985
MscI TGGCCA 1 cut(s) 526
MseI TTAA 8 cut(s) 272, 447, 642, 861, 1011, 1457, 1520, 1801
MslI CAYNNNNRTG 1 cut(s) 1269
Msp20I TGGCCA 1 cut(s) 526
MspCI CTTAAG 1 cut(s) 1456
MspI CCGG 1 cut(s) 295
MspR9I CCNGG 2 cut(s) 296, 587
MvaI CCWGG 1 cut(s) 587
MwoI GCNNNNNNNGC 4 cut(s) 196, 1082, 1215, 1753
NciI CCSGG 1 cut(s) 296
NdeII GATC 5 cut(s) 18, 103, 609, 774, 1231
NlaIII CATG 7 cut(s) 199, 396, 941, 1064, 1106, 1268, 1669
NsiI ATGCAT 1 cut(s) 985
NspI RCATGY 3 cut(s) 199, 1106, 1268
PagI TCATGA 2 cut(s) 937, 1060
PciI ACATGT 2 cut(s) 1102, 1264
PcsI WCGNNNNNNNCGW 1 cut(s) 486
PfeI GAWTC 4 cut(s) 315, 517, 941, 1796
PflMI CCANNNNNTGG 1 cut(s) 1382
PkrI GCNGC 4 cut(s) 810, 1224, 1691, 1746
PleI GAGTC 1 cut(s) 1441
PpsI GAGTC 1 cut(s) 1441
Ppu21I YACGTR 1 cut(s) 917
PscI ACATGT 2 cut(s) 1102, 1264
PsiI TTATAA 1 cut(s) 791
Psp6I CCWGG 1 cut(s) 585
PspEI GGTNACC 1 cut(s) 715
PspGI CCWGG 1 cut(s) 585
PspPI GGNCC 2 cut(s) 365, 896
PstI CTGCAG 1 cut(s) 1477
PstNI CAGNNNCTG 1 cut(s) 128
RsaI GTAC 4 cut(s) 572, 1479, 1602, 1675
RsaNI GTAC 4 cut(s) 571, 1478, 1601, 1674
RseI CAYNNNNRTG 1 cut(s) 1269
SaqAI TTAA 8 cut(s) 272, 447, 642, 861, 1011, 1457, 1520, 1801
SatI GCNGC 4 cut(s) 809, 1223, 1690, 1745
Sau3AI GATC 5 cut(s) 18, 103, 609, 774, 1231
Sau96I GGNCC 2 cut(s) 365, 896
ScaI AGTACT 2 cut(s) 572, 1675
SchI GAGTC 1 cut(s) 1442
ScrFI CCNGG 2 cut(s) 296, 587
SduI GDGCHC 1 cut(s) 555
SexAI ACCWGGT 1 cut(s) 585
SfaNI GCATC 4 cut(s) 396, 970, 992, 1087
SfcI CTRYAG 4 cut(s) 369, 501, 1314, 1473
SmiMI CAYNNNNRTG 1 cut(s) 1269
SmlI CTYRAG 3 cut(s) 802, 1226, 1456
SmoI CTYRAG 3 cut(s) 802, 1226, 1456
Sse9I AATT 9 cut(s) 132, 184, 269, 450, 793, 1248, 1564, 1683, 1780
SsiI CCGC 2 cut(s) 1453, 1744
SspMI CTAG 2 cut(s) 537, 1007
StyD4I CCNGG 2 cut(s) 294, 585
StyI CCWWGG 2 cut(s) 319, 536
TaaI ACNGT 2 cut(s) 834, 1673
TaiI ACGT 2 cut(s) 919, 1426
TaqI TCGA 1 cut(s) 1574
TasI AATT 9 cut(s) 132, 184, 269, 450, 793, 1248, 1564, 1683, 1780
TatI WGTACW 2 cut(s) 570, 1673
TauI GCSGC 1 cut(s) 1747
TfiI GAWTC 4 cut(s) 315, 517, 941, 1796
Tru1I TTAA 8 cut(s) 272, 447, 642, 861, 1011, 1457, 1520, 1801
Tru9I TTAA 8 cut(s) 272, 447, 642, 861, 1011, 1457, 1520, 1801
TscAI CASTG 3 cut(s) 57, 1501, 1537
TseI GCWGC 3 cut(s) 808, 1222, 1689
TspGWI ACGGA 1 cut(s) 510
TspRI CASTG 3 cut(s) 57, 1501, 1537
Van91I CCANNNNNTGG 1 cut(s) 1382
Vha464I CTTAAG 1 cut(s) 1456
VneI GTGCAC 1 cut(s) 551
XagI CCTNNNNNAGG 1 cut(s) 98
XapI RAATTY 4 cut(s) 184, 450, 793, 1248
XceI RCATGY 3 cut(s) 199, 1106, 1268
XmaJI CCTAGG 1 cut(s) 536
XmiI GTMKAC 1 cut(s) 431
XspI CTAG 2 cut(s) 537, 1007
ZrmI AGTACT 2 cut(s) 572, 1675
Zsp2I ATGCAT 1 cut(s) 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.