Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8410931.1

Orthogroup ID

OG0004178

Physical Location & Seq

Genomic Coordinates Forward (+)

43 .. 1071

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8410931.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgaagacagcaactacaaggaaatcctctgaaatcttgatgtctgttgctgcggaggttcagttgcagctgcagaatgtagagtctcagattcaaacagacatgggaaagcttacaaaccttggcaaatcaaagagaaaaaagctggaaacaaggtttgaggagcaacaaggacaactgaaagtgatttgtgacaagttcaaggaacaggtcaatcagcatcttcaggattgcagaagtacatttgaaggtctggaagtgtaccagacagagtttaagggaactgtggaaaagcaaagtatggcatcttctcttctttccgatattgtattaatttgttgcctcatttcatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0007049 GO:0008150 GO:0009987 GO:0010564 GO:0022414 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0040020 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044087 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051321 GO:0051445 GO:0051726 GO:0051783 GO:0051983 GO:0060629 GO:0060631 GO:0065007 GO:0070013 GO:0090173 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.44

Weight (kDa)

7.63

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0004178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46980 AT2G46980 AT2G46980 AT2G46980 AT2G46980 AT2G46980 AT5G20995
fragaria_vesca	FvH4_1g26160 FvH4_1g26160 FvH4_4g08230
malus_domestica	MD09G1291300.v1.1 MD17G1286100.v1.1
prunus_persica	Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1
pyrus_communis	pycom09g19920 pycom17g28230
rosa_chinensis	RchiOBHm_Chr3g0485651
rosa_laevigata	RLG00000023137
rosa_multiflora	Rmu_co8410931.1_g000001
rosa_roxburghii	Rroxscaffold_6G00396550
rosa_rugosa	Rorug03G0220500
rosa_samantha	Rh3AG269400 Rh3BG305200 Rh3CG303500 Rh3DG299700
rosa_wichuraiana	Rw3G024010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	2 cut(s)	241, 263
AgsI	TTSAA	3 cut(s)	95, 202, 248
AluBI	AGCT	3 cut(s)	70, 112, 145
AluI	AGCT	3 cut(s)	70, 112, 145
Alw26I	GTCTC	1 cut(s)	90
ApeKI	GCWGC	3 cut(s)	50, 67, 70
AseI	ATTAAT	1 cut(s)	332
BarI	GAAGNNNNNNTAC	2 cut(s)	292, 324
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	3 cut(s)	37, 57, 79
BcoDI	GTCTC	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	71
BisI	GCNGC	3 cut(s)	51, 68, 71
BlsI	GCNGC	3 cut(s)	52, 69, 72
BmsI	GCATC	2 cut(s)	229, 314
BpiI	GAAGAC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
BseDI	CCNNGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	3 cut(s)	37, 57, 79
BsmAI	GTCTC	1 cut(s)	90
BspACI	CCGC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	100
BspMAI	CTGCAG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	87
BstMAI	GTCTC	1 cut(s)	90
BstSFI	CTRYAG	1 cut(s)	71
BstV1I	GCAGC	3 cut(s)	37, 57, 79
BstV2I	GAAGAC	1 cut(s)	11
Csp6I	GTAC	2 cut(s)	240, 262
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	3 cut(s)	70, 112, 145
CviKI_1	RGCY	3 cut(s)	70, 112, 145
CviQI	GTAC	2 cut(s)	240, 262
DdeI	CTNAG	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	1 cut(s)	106
FaiI	YATR	3 cut(s)	104, 302, 352
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	3 cut(s)	51, 68, 71
Fsp4HI	GCNGC	3 cut(s)	51, 68, 71
GluI	GCNGC	3 cut(s)	51, 68, 71
Hin1II	CATG	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	2 cut(s)	83, 91
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	3 cut(s)	31, 90, 322
Hpy188III	TCNNGA	3 cut(s)	37, 227, 254
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	1 cut(s)	242
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	3 cut(s)	67, 73, 234
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	5 cut(s)	131, 194, 212, 239, 278
Lsp1109I	GCAGC	3 cut(s)	37, 57, 79
LweI	GCATC	2 cut(s)	229, 314
MaeIII	GTNAC	1 cut(s)	191
MboII	GAAGA	4 cut(s)	16, 215, 300, 305
MluCI	AATT	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	4 cut(s)	37, 49, 154, 353
MseI	TTAA	2 cut(s)	276, 332
MspA1I	CMGCKG	1 cut(s)	70
NlaIII	CATG	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	3 cut(s)	52, 69, 72
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PshBI	ATTAAT	1 cut(s)	332
PstI	CTGCAG	1 cut(s)	75
PvuII	CAGCTG	1 cut(s)	70
RsaI	GTAC	2 cut(s)	241, 263
RsaNI	GTAC	2 cut(s)	240, 262
SaqAI	TTAA	2 cut(s)	276, 332
SatI	GCNGC	3 cut(s)	51, 68, 71
SchI	GAGTC	1 cut(s)	92
SetI	ASST	8 cut(s)	60, 72, 114, 123, 147, 158, 213, 253
SfaNI	GCATC	2 cut(s)	229, 314
SfcI	CTRYAG	1 cut(s)	71
Sse9I	AATT	1 cut(s)	333
SsiI	CCGC	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	286
TasI	AATT	1 cut(s)	333
TatI	WGTACW	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	2 cut(s)	276, 332
Tru9I	TTAA	2 cut(s)	276, 332
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	3 cut(s)	50, 67, 70
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	2 cut(s)	17, 339
VspI	ATTAAT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.